View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972-Insertion-7 (Length: 580)
Name: NF5972-Insertion-7
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972-Insertion-7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 9 - 580
Target Start/End: Original strand, 43543947 - 43544518
Alignment:
| Q |
9 |
ggttgaatttggctcaacctagattctaagatggtattagagcctatacaaaatctgttgttctacccgcttgagtgtgaggggatgattccttcatctt |
108 |
Q |
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| T |
43543947 |
ggttgaatttggctcaacctagattctaagatggtattagagcctatacaaaatctgttgttctacccgcttgagtgtgaggggatgattccttcatctt |
43544046 |
T |
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| Q |
109 |
acaagcctgttttcttggattgaatttaaacaaatccaaattctaagagtagcgatgatttcataagattttggttgggttctgctttgaaagggctttc |
208 |
Q |
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| T |
43544047 |
acaagcctgttttcttggattgaatttaaacaaatccaaattctaagagtagcgatgatttcataagattttggttgggttctgctttgaaagggctttc |
43544146 |
T |
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| Q |
209 |
atgtcattcagtttactaagaagcttggataatagctcttctaaatattataaacaaacttataatttcctgctgcaaaaggattttatgatcacattga |
308 |
Q |
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| T |
43544147 |
atgtcattcagtttactaagaagcttggataatagctcttctaaatattataaacaaacttataatttcctgctgcaaaaggattttatgatcacattga |
43544246 |
T |
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| Q |
309 |
agttgaacaaaccaaccttcatctcttgtaggtatgaaggcttggaaaaattcataagtcacaagcttcaactaatgccacaaactgcgcgatccgtagc |
408 |
Q |
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| T |
43544247 |
agttgaacaaaccaaccttcatctcttgtaggtatgaaggcttggaaaaattcataagtcacaagcttcaactaatgccacaaactgcgcgatccgtagc |
43544346 |
T |
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| Q |
409 |
tacaaaagttgcaatggacggcttgattttcggtccagtacatttgtttgttttctttagttacatgggattgtctgctggaaagactattcctgaggtg |
508 |
Q |
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| T |
43544347 |
tacaaaagttgcaatggacggcttgattttcggtccagtacatttgtttgttttctttagttacatgggattgtctgctggaaagactattcctgaggtg |
43544446 |
T |
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| Q |
509 |
aaggaagacttgaagaggaattatttcccagccttggttttagaaggtggtgtgtggccaattgtgcaggtt |
580 |
Q |
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| T |
43544447 |
aaggaagacttgaagaggaattatttcccagccttggttttagaaggtggtgtgtggccaattgtgcaggtt |
43544518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 2115323 - 2115368
Alignment:
| Q |
9 |
ggttgaatttggctcaacctagattctaagatggtattagagccta |
54 |
Q |
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| T |
2115323 |
ggttgagttaggctcaaccaaaattctaagatggtattagagccta |
2115368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 49190206 - 49190149
Alignment:
| Q |
11 |
ttgaatttggctcaacctagattctaagatggtattagagcctatacaaaatctgttg |
68 |
Q |
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| T |
49190206 |
ttgagtttggctcaacccaaattctaagatggtatcagagcctatccaagatccgttg |
49190149 |
T |
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