View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972-Insertion-8 (Length: 540)
Name: NF5972-Insertion-8
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972-Insertion-8 |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 141658 - 141965
Alignment:
| Q |
16 |
atctcaccctcttgacatcctccagtaaagtaaagatgaattcatagtatccccttcccagtgatgtgattccccactgtgacaaattcttccagtattg |
115 |
Q |
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| T |
141658 |
atctcaccctcttgacatcctccagtgaagtaaagatgaattcatagtatccccttcccagtgatgtgattccccactgtgacaaattcttccagtattg |
141757 |
T |
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| Q |
116 |
tgaaagcttcttcttcaagtcaaaaactggcagtggtgttgcgcctttgggccagatgattttcctatggagattcagcttgcatgcgtctgtaccacat |
215 |
Q |
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| T |
141758 |
tgaaagcttcttcttcaagtcaaaaactgtcagtggtgttgcgcctttgggccagatgattttcccatggagatttagcttgcatgcgtctgtaccagat |
141857 |
T |
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| Q |
216 |
tcatattcatgttctggaatctcgattgatagcatgtcccccttgattaccgattgacggagctgcgagtttgggatgctacagacattcgaaacggctt |
315 |
Q |
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| T |
141858 |
tcatattcatgttctggaatctcgattgatcgcatgtccccgttgattaccgattgagggagttgcgagtttgggatgctacagacattcggaacgactt |
141957 |
T |
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| Q |
316 |
gtgcgaaa |
323 |
Q |
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| T |
141958 |
gtgcgaaa |
141965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 360 - 535
Target Start/End: Original strand, 142002 - 142178
Alignment:
| Q |
360 |
ataggtgtaggtgaatcatccaaacatttccaaggtatctcaaaagaacccatgagaaatggaggttaattggctaaggaggtggtgcaacggtgttttc |
459 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
142002 |
ataggtgtaggtgaatcatccaaacatttccaaggtatctgaaaagaacccatgagaaatggaggttaattggctaaggcggtggtgcaacggtgttttc |
142101 |
T |
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| Q |
460 |
ctttaggtt-agcaagaagatggtgaaaagtgtaaattctccccagcttctctctcatctctctaaagccaagaaaa |
535 |
Q |
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| T |
142102 |
ttttaggttaagcaagaagatggtgaagagtgtaaattctccacagcttctctctcatctctctaaaaccaagaaaa |
142178 |
T |
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