View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972-Insertion-9 (Length: 460)
Name: NF5972-Insertion-9
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972-Insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 378
Target Start/End: Original strand, 37005041 - 37005409
Alignment:
| Q |
9 |
aattaaacacttcatttctatctctagctctaggctccaatccgaaatgagggagatgatatccggtggttttgtagggacccatgtatcccataaagat |
108 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
37005041 |
aattaaacacttcatttctccctctagctctaggctccaatccgaaatgagggagatgatacctggtggttttgtagggacccatgtatcccataaagat |
37005140 |
T |
|
| Q |
109 |
aggataaccagcctcaacaaggtaatatttttctgaaaagacaattctaaaaattatttatatccctaagagtcacattattgtaacattt-taaaaaca |
207 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | |
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| T |
37005141 |
aggataaccagcatcaacaaggtaatatttttctacaaagacaattctaaaaattatttatatccctaagtgtcacattattgtaacatttaaaaaaaaa |
37005240 |
T |
|
| Q |
208 |
aaatagatgaacacaaaaattactaaattgataggtcatcttgaagnnnnnnnctattgcaaggaagtaaaaataaataattatgaattaacgatggaag |
307 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37005241 |
aaatagatgaacac--aaattactaaattgataggtcatcttgaagaaaaaaactattgcaaggaagtaaaaataaataattatgaattaatgatggaaa |
37005338 |
T |
|
| Q |
308 |
caagacaagttgaagatgaaattattaatggttagtgaaaagatgaggaacaaattggaagatgacagtat |
378 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37005339 |
caagacaagttgaagatgaaattattaatggttagtgaaaagatgaggaacaaattggaagatgacagtat |
37005409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 378
Target Start/End: Complemental strand, 43406896 - 43406533
Alignment:
| Q |
13 |
aaacacttcatttctatctctagctctaggctccaatccgaaatgagggagatgatatccggtggttttgtagggacccatgtatcccataaagatagga |
112 |
Q |
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||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| | |||||||||||||||||| |||||||||||||||||| | |
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| T |
43406896 |
aaacacttcatttctccctctagctctaggccccaatctgaaatgagggagatgatacctagtggttttgtagggacccgtgtatcccataaagatagaa |
43406797 |
T |
|
| Q |
113 |
taaccagcctcaacaaggtaatatttttctgaaaagacaattctaaaaattatttatatccctaagagtcacattattgtaacattttaaaaacaaaata |
212 |
Q |
| |
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|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43406796 |
taaccagcatcaacaaggtaatatttttctacaaagacaattctaaaaattatttatatccctaagagtcacattattgtaacattttaaaa--aaaata |
43406699 |
T |
|
| Q |
213 |
gatgaacacaaaaattactaaattgataggtcatcttgaagnnnnnnnctattgcaaggaagtaaaaataaataattatgaattaacgatggaagcaaga |
312 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43406698 |
gatgaacacaaaaattactaaattgataggtcatcttgaagaaaaaaactattgcaaggaagtaaaaataaataattatgaattaatgatggaagcaaga |
43406599 |
T |
|
| Q |
313 |
caagttgaagatgaaattattaatggttagtgaaaagatgaggaacaaattggaagatgacagtat |
378 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43406598 |
caagttgaagatgaaattattaatggttagtgaaaagatgaggaacaaattggaagatgtcagtat |
43406533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 13 - 374
Target Start/End: Complemental strand, 49129022 - 49128663
Alignment:
| Q |
13 |
aaacacttcatttctatctctagctctaggctccaatccgaaatgagggagatgatatccggtggttttgtagggacccatgtatcccataaagatagga |
112 |
Q |
| |
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||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| | |||||||||||||||||| |||||||||||||||||| | |
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| T |
49129022 |
aaacacttcatttctccctctagctctaggccccaatctgaaatgagggagatgatacctagtggttttgtagggacccgtgtatcccataaagatagaa |
49128923 |
T |
|
| Q |
113 |
taaccagcctcaacaaggtaatatttttctgaaaagacaattctaaaaattatttatatccctaagagtcacattattgtaacattttaaaaacaaaata |
212 |
Q |
| |
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|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
49128922 |
taaccagcatcaacaaggtaatatttttctacaaagacaattctaaaaattatttatatccctaagagtcacattattgtaacattt--aaaaaaaaata |
49128825 |
T |
|
| Q |
213 |
gatgaacacaaaaattactaaattgataggtcatcttgaagnnnnnnnctattgcaaggaagtaaaaataaataattatgaattaacgatggaagcaaga |
312 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49128824 |
gatgaaaacaaaaattactaaattgataggtcatcttgaagaaaaaaactattgcaaggaagtaaaaataaataattatgaattaatgatggaagcaaga |
49128725 |
T |
|
| Q |
313 |
caagttgaagatgaaattattaatggttagtgaaaagatgaggaacaaattggaagatgaca |
374 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49128724 |
caagttgaagatgaaattattaatggttagtgaaaagatgaggaacaaattggaagatgaca |
49128663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 202 - 378
Target Start/End: Complemental strand, 34885239 - 34885063
Alignment:
| Q |
202 |
aaaacaaaatagatgaacacaaaaattactaaattgataggtcatcttgaagnnnnnnnctattgcaaggaagtaaaaataaataattatgaattaacga |
301 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
34885239 |
aaaaaaaaaaagatgaacacaaaaattactaaattgataggtcatcttgaagaaaaaaactattgcaaggaagtaaaaataaataattatgaattaaaga |
34885140 |
T |
|
| Q |
302 |
tggaagcaagacaagttgaagatgaaattattaatggttagtgaaaagatgaggaacaaattggaagatgacagtat |
378 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34885139 |
tggaagcaagacaagttgaagatgaaattattaatggttagtgaaaagatgaggaacaaattggaagatgacagtat |
34885063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 34886318 - 34886129
Alignment:
| Q |
9 |
aattaaacacttcatttctatctctagctctaggctccaatccgaaatgagggagatgatatccggtggttttgtagggacccatgtatcccataaagat |
108 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||||||||||| ||||||||||| |
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| T |
34886318 |
aattaaacacttcatttcttcctctagctctaggccccaatctgaaatgagggagatgatacctagtggttttgtagggacccatgtagcccataaagat |
34886219 |
T |
|
| Q |
109 |
aggataaccagcctcaacaaggtaatatttttctgaaaagacaattctaaaaattatttatatccctaagagtcacattattgtaacattt |
199 |
Q |
| |
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|||||||||| | |||||||| ||||||||| || |||||||| | |||||| |||||||||||| ||||||||| |||||||||||||| |
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|
| T |
34886218 |
aggataaccaacatcaacaagataatattttcttgtaaagacaa-tataaaaaatatttatatcccgaagagtcacgttattgtaacattt |
34886129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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