View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5972_high_1 (Length: 727)
Name: NF5972_high_1
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 673; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 18 - 714
Target Start/End: Original strand, 11628744 - 11629440
Alignment:
| Q |
18 |
agagacttggcccaaaagcttttttccgaaataagacgaaaagttccaaaaggcctggaaagcatgcatagagacaagttgaagatgattatcaaaaagt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11628744 |
agagacttggcccaaaagcttttttccgaaataagacgaaaagttccaaaaggcctggaaagcatgcatagagacaagttgaaaatgattatcaaaaagc |
11628843 |
T |
|
| Q |
118 |
tgttgcagagaaggaagtacctggttgtatttgatgatgtgtggcataggcatgaatgggaagctgtcagatatgcacttccaaaaaacaattatggcag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11628844 |
tgttgcagagaaggaagtacctggttgtatttgatgatgtgtggcataggcatgaatgggaagctgtcagatatgcacttccaaaaaacaattatggcag |
11628943 |
T |
|
| Q |
218 |
caggatcatgctcaccacacgtaaatctaacttagccaatatttccagcaaagaatccaaaggtaaggtatataacctgcaacccttgaaagaagatgaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11628944 |
caggatcatgctcaccacacgtaaatctaacttagccaatatttccagcaaagaatccaaaggtaaggtatataacctacaacccttgaaagaagatgaa |
11629043 |
T |
|
| Q |
318 |
gcatgggatctattttgcaaaaagactttccaaggtcaccgatgcccttcatatttaattaacatatgtagttatatcttaagaaaatgtgagggccttc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11629044 |
gcatgggatctattttgcaaaaagactttccaaggtcaccgatgcccttcatatttaattaacatatgtagttatatcttaagaaaatgtgagggccttc |
11629143 |
T |
|
| Q |
418 |
ctcttgcgattgtagcaatgagtggtgtccttgctacaaaagacaaacacaggatagatgagtgggataggatttgccgtagtcttggagctgaaattca |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11629144 |
ctcttgcgattgtagcaatgagtggtgtccttgctacaaaagacaaacataggatagatgagtgggataggatttgccgtagtcttggagctgaaattca |
11629243 |
T |
|
| Q |
518 |
aatcaacggaaaacttgataatctgaaaacagtacttagcctcagttttaatgatttgccttactacttaaagtattgtttcttgtacttaagcatgttt |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11629244 |
aatcaacggaaaacttgataatctgaaaacagtacttagcctcagttttaatgatttgcctcactacttaaagtattgtttcttgtacttaagcatgttt |
11629343 |
T |
|
| Q |
618 |
cctgaggactatctgattcagcgcatgaggttgattcggttatggatagcagaaggatttatcaaagccggagaaggaaaaacaatggaagatattg |
714 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11629344 |
cctgaggactatctgattcaacgcatgaggttgattcggttatggatagcagaaggatttatcaaagccggagaaggaaaaacaatggaagatattg |
11629440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 134 - 710
Target Start/End: Original strand, 11651165 - 11651741
Alignment:
| Q |
134 |
gtacctggttgtatttgatgatgtgtggcataggcatgaatgggaagctgtcagatatgcacttccaaaaaacaattatggcagcaggatcatgctcacc |
233 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||| |||| |
|
|
| T |
11651165 |
gtacctagttgtatttgatgatgtgtggcatatacatgaatgggaagctgtcaaatatgcacttccaaaaaacaattgtggtagcaggatcatgatcacg |
11651264 |
T |
|
| Q |
234 |
acacgtaaatctaacttagccaatatttccagcaaagaatccaaaggtaaggtatataacctgcaacccttgaaagaagatgaagcatgggatctatttt |
333 |
Q |
| |
|
||||| ||||| || ||||| ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11651265 |
acacgcaaatcggacatagcctctatttccagcatagaatccaaaggtaaggtgtataacctacaacccttgaaagaagatgaagcatgggatctatttt |
11651364 |
T |
|
| Q |
334 |
gcaaaaagactttccaaggtcaccgatgcccttcatatttaattaacatatgtagttatatcttaagaaaatgtgagggccttcctcttgcgattgtagc |
433 |
Q |
| |
|
| | ||||||||||||||||||| ||| |||||||| |||||| |||| |||||||||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
11651365 |
gtagaaagactttccaaggtcactcatgtccttcatacttaattgacatttgtagttatatcttaagaaaatgtgagggcctaccccttgcaattgtagc |
11651464 |
T |
|
| Q |
434 |
aatgagtggtgtccttgctacaaaagacaaacacaggatagatgagtgggataggatttgccgtagtcttggagctgaaattcaaatcaacggaaaactt |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| || ||||| | ||||||||||||||||||||||||||||||| |||| || |||||| |
|
|
| T |
11651465 |
aatgagtggtgtccttgctacaaaagacaagcacaggatagacgaatgggacatgatttgccgtagtcttggagctgaaattcaagtcaatgggaaactt |
11651564 |
T |
|
| Q |
534 |
gataatctgaaaacagtacttagcctcagttttaatgatttgccttactacttaaagtattgtttcttgtacttaagcatgtttcctgaggactatctga |
633 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11651565 |
gataatctgaaaacagtacttagcctcagttttaatgatttgccttactatttaaagtactgtttcttgtatttaagcatgtttcctgaggactatctga |
11651664 |
T |
|
| Q |
634 |
ttcagcgcatgaggttgattcggttatggatagcagaaggatttatcaaagccggagaaggaaaaacaatggaagat |
710 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
11651665 |
ttcagcgcatgagattgattcggttatggatagcagaaggatttatcgaagccaaaagcggaaaaacaatggaagat |
11651741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 11650850 - 11650969
Alignment:
| Q |
18 |
agagacttggcccaaaagcttttttccgaaataagacgaaaagttccaaaaggcctggaaagcatgcatagagacaagttgaagatgattatcaaaaagt |
117 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||||||||||||||||| ||||| |||||| |||||| || |||||||||||||||||||| ||| || |
|
|
| T |
11650850 |
agagacttggccgaaaaacttttttctgaaataagacgaaaagttccagaaggcttggaaaacatgcacagtgacaagttgaagatgattattaaagagc |
11650949 |
T |
|
| Q |
118 |
tgttgcagagaaggaagtac |
137 |
Q |
| |
|
| ||||||||||||| |||| |
|
|
| T |
11650950 |
tcttgcagagaaggaggtac |
11650969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University