View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5972_high_13 (Length: 406)

Name: NF5972_high_13
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5972_high_13
NF5972_high_13
[»] chr6 (20 HSPs)
chr6 (197-391)||(6672965-6673159)
chr6 (1-171)||(6673624-6673793)
chr6 (57-174)||(4485566-4485684)
chr6 (305-391)||(4485007-4485093)
chr6 (75-171)||(11936771-11936868)
chr6 (75-171)||(16734804-16734901)
chr6 (73-171)||(12591830-12591929)
chr6 (73-132)||(15690435-15690494)
chr6 (58-136)||(9631195-9631273)
chr6 (75-171)||(15361714-15361811)
chr6 (88-171)||(11948751-11948835)
chr6 (57-136)||(1942550-1942629)
chr6 (73-136)||(6684091-6684154)
chr6 (73-171)||(14669350-14669449)
chr6 (57-180)||(23264491-23264617)
chr6 (57-136)||(29667955-29668036)
chr6 (59-136)||(23904392-23904469)
chr6 (71-136)||(34374820-34374885)
chr6 (73-121)||(17719778-17719826)
chr6 (64-118)||(4591138-4591192)
[»] chr3 (16 HSPs)
chr3 (197-391)||(1612584-1612784)
chr3 (70-180)||(1613208-1613319)
chr3 (57-135)||(5498459-5498537)
chr3 (57-182)||(16457324-16457450)
chr3 (73-171)||(13845989-13846088)
chr3 (57-136)||(27259485-27259564)
chr3 (75-171)||(7407758-7407855)
chr3 (73-136)||(1627987-1628050)
chr3 (78-171)||(2550168-2550262)
chr3 (75-136)||(1654575-1654636)
chr3 (57-132)||(9633486-9633561)
chr3 (77-136)||(26707860-26707919)
chr3 (58-174)||(27713440-27713554)
chr3 (93-136)||(2943254-2943297)
chr3 (100-166)||(35083000-35083067)
chr3 (97-171)||(36035310-36035385)
[»] scaffold0007 (2 HSPs)
scaffold0007 (197-391)||(9249-9439)
scaffold0007 (57-182)||(8726-8850)
[»] chr7 (16 HSPs)
chr7 (197-382)||(26701562-26701757)
chr7 (57-136)||(3234308-3234387)
chr7 (57-123)||(14803113-14803179)
chr7 (57-123)||(15250107-15250173)
chr7 (75-171)||(4685407-4685504)
chr7 (73-136)||(26205455-26205518)
chr7 (73-136)||(26225018-26225081)
chr7 (57-171)||(26608543-26608658)
chr7 (57-171)||(30089716-30089831)
chr7 (73-136)||(9242524-9242587)
chr7 (73-136)||(10022121-10022184)
chr7 (60-136)||(20277400-20277476)
chr7 (57-136)||(26619143-26619221)
chr7 (76-136)||(26621131-26621191)
chr7 (73-136)||(16170268-16170331)
chr7 (57-117)||(29932407-29932467)
[»] chr2 (10 HSPs)
chr2 (57-172)||(41573374-41573490)
chr2 (197-391)||(41573949-41574139)
chr2 (75-171)||(31342720-31342817)
chr2 (60-182)||(11017441-11017564)
chr2 (73-136)||(30267000-30267063)
chr2 (73-136)||(7718182-7718245)
chr2 (73-136)||(44920955-44921017)
chr2 (73-171)||(15513664-15513763)
chr2 (61-136)||(24479137-24479212)
chr2 (76-152)||(40016591-40016667)
[»] chr8 (20 HSPs)
chr8 (57-182)||(6403574-6403700)
chr8 (57-171)||(29553610-29553725)
chr8 (75-171)||(25638806-25638903)
chr8 (75-171)||(28249079-28249176)
chr8 (57-171)||(6801834-6801949)
chr8 (73-171)||(17634475-17634574)
chr8 (60-170)||(31347333-31347444)
chr8 (78-171)||(45356116-45356210)
chr8 (73-136)||(5528740-5528803)
chr8 (73-171)||(25637641-25637740)
chr8 (60-167)||(5650953-5651061)
chr8 (73-129)||(19369957-19370013)
chr8 (73-129)||(19448445-19448501)
chr8 (73-129)||(19532575-19532631)
chr8 (77-135)||(29345432-29345490)
chr8 (57-132)||(31369150-31369225)
chr8 (58-136)||(5000661-5000739)
chr8 (73-129)||(18766914-18766970)
chr8 (57-120)||(19341476-19341540)
chr8 (57-171)||(14997602-14997717)
[»] chr4 (12 HSPs)
chr4 (61-136)||(24559035-24559110)
chr4 (57-171)||(4881073-4881188)
chr4 (73-136)||(47066074-47066137)
chr4 (78-171)||(43600269-43600363)
chr4 (73-136)||(53300348-53300411)
chr4 (73-129)||(1684999-1685055)
chr4 (73-129)||(1152041-1152097)
chr4 (57-119)||(4923690-4923752)
chr4 (58-136)||(26075290-26075368)
chr4 (63-136)||(4904180-4904253)
chr4 (93-136)||(21539311-21539354)
chr4 (85-136)||(48464049-48464100)
[»] chr1 (15 HSPs)
chr1 (57-171)||(12189933-12190048)
chr1 (73-171)||(16222775-16222874)
chr1 (57-152)||(28636884-28636979)
chr1 (57-136)||(897436-897515)
chr1 (57-136)||(5911704-5911783)
chr1 (73-136)||(37097380-37097443)
chr1 (73-136)||(51758750-51758813)
chr1 (73-134)||(15214324-15214385)
chr1 (85-171)||(13208621-13208708)
chr1 (96-175)||(3399642-3399722)
chr1 (60-132)||(39368684-39368756)
chr1 (73-136)||(15193916-15193979)
chr1 (95-136)||(15204613-15204654)
chr1 (52-153)||(17112901-17113002)
chr1 (61-118)||(18308133-18308190)
[»] chr5 (21 HSPs)
chr5 (57-171)||(9354393-9354508)
chr5 (57-136)||(18191889-18191968)
chr5 (57-152)||(30786248-30786343)
chr5 (75-171)||(5079068-5079165)
chr5 (57-136)||(9333601-9333680)
chr5 (57-136)||(12042217-12042296)
chr5 (73-136)||(17037540-17037603)
chr5 (73-136)||(31069002-31069065)
chr5 (57-123)||(17535352-17535418)
chr5 (75-171)||(7410823-7410920)
chr5 (57-152)||(19984976-19985071)
chr5 (63-117)||(11833300-11833354)
chr5 (73-129)||(23679438-23679494)
chr5 (73-129)||(23855317-23855373)
chr5 (57-120)||(12004566-12004628)
chr5 (57-136)||(31571010-31571089)
chr5 (71-117)||(28080095-28080141)
chr5 (57-136)||(10869419-10869497)
chr5 (73-114)||(31406413-31406454)
chr5 (57-120)||(30655231-30655295)
chr5 (57-117)||(38450025-38450085)
[»] scaffold0576 (1 HSPs)
scaffold0576 (75-171)||(6698-6795)
[»] scaffold0684 (1 HSPs)
scaffold0684 (73-129)||(794-850)
[»] scaffold0069 (1 HSPs)
scaffold0069 (85-129)||(40745-40789)


Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 197 - 391
Target Start/End: Complemental strand, 6673159 - 6672965
Alignment:
Q  197 agtgcacatccatagccccactagtttctggaatgcaatatcctctagcatgcctatgattagcccccttagctttcatcaccataaattgaccaaaagg 296  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  6673159 agtgcacatccatagccccactagtttctgcaatgcaatatcctctagcatgcctatgattagcccccttagctttcatcaccacaagttgaccaaaagg 6673060  T
Q  297 nnnnnnnnaccttcgaagaacctgcaacaaatttgaaaacatccaaggaataaaattatatggatataacaagtcctctgctcatagtctttcat 391  Q
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6673059 ttttttttaccttcgaagaacctgcaacaaatttgaaaacatccaaggaataaaattatatggatataacaagtcctctgctcatagtctttcat 6672965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 6673793 - 6673624
Alignment:
Q  1 ctgtcaaatatacgtaatgctagagtaagctaaataggtagagctaagaacatactctacaacataattaagatttagtaacagttgaaaaatgtaacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6673793 ctgtcaaatatacgtaatgctagagtaagctaaataggtagagctaagaacatactctacaacataattaagatttagtaacagttgaaaaatgtaacta 6673694  T
Q  101 aatcaagaaaaatgttactaaataaatttagtaacagttggttaattgttagtaaaacccgtgttactaaa 171  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  6673693 aatcaagaaaaatgttactaaa-aaatttagtaacagttcgttaattgttagtaaaacccgtgttactaaa 6673624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 4485684 - 4485566
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaa 155  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||||||||| |||||| |||||| |||||||||||| | |||  ||||||||| ||||    
T  4485684 ctacaacataattaagatctagtatcagttgaaaaatgcaactaaatcaaggaaaatggtactaattaaatttagtaatatttgaataattgttaggtaa 4485585  T
Q  156 aacccgtgttactaaatag 174  Q
    |  |||||||| |||||||    
T  4485584 agtccgtgttattaaatag 4485566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 391
Target Start/End: Complemental strand, 4485093 - 4485007
Alignment:
Q  305 accttcgaagaacctgcaacaaatttgaaaacatccaaggaataaaattatatggatataacaagtcctctgctcatagtctttcat 391  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||  |||||| |||||| ||||||||    
T  4485093 accttcaaagaacttgcaacaaatttaaaaacatccaaggaataaaattatatggatatatcatatcctcttctcatattctttcat 4485007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 11936868 - 11936771
Alignment:
Q  75 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgttag-taaaacccgtgttactaaa 171  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||   ||||||||| |||| ||||||||||||||    
T  11936868 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaa 11936771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 16734804 - 16734901
Alignment:
Q  75 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||   |||||||| ||||| ||||||||||||||    
T  16734804 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacatttgaacaattgttaggtaaagcccgtgttactaaa 16734901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 12591830 - 12591929
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||| ||| |||||||||||||  | |   |||||||| ||||| ||||||||||||||    
T  12591830 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacgctcgaacaattgttaggtaaagcccgtgttactaaa 12591929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 15690435 - 15690494
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagt 132  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  15690435 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagt 15690494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 9631273 - 9631195
Alignment:
Q  58 tacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    |||||||||||| ||||||||||||| ||||||| | | ||||||||||||| || |||||||| ||||||||||||||    
T  9631273 tacaacataattgagatttagtaacacttgaaaactattactaaatcaagaagaacgttactaagtaaatttagtaaca 9631195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 15361714 - 15361811
Alignment:
Q  75 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    ||||||||| || |||| ||||||||||||||||||||||||||||| ||||||||| |||| |||   |||||||| ||||| || |||||||||||    
T  15361714 ttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaa 15361811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 11948835 - 11948751
Alignment:
Q  88 aaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgttag-taaaacccgtgttactaaa 171  Q
    |||| ||||||||||||||||||||||||||||| ||||||||| |||| |||   ||||||||| |||| ||||||||||||||    
T  11948835 aaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaa 11948751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 1942550 - 1942629
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    |||||||||||||||||||| |||||| |||| || ||||||||||||||||||||| ||||| |  ||||||| |||||    
T  1942550 ctacaacataattaagatttggtaacatttgataattgtaactaaatcaagaaaaatattactgataaaatttaataaca 1942629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 6684091 - 6684154
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||| || |||| ||||||| ||||||||||||||||||||| ||||||||||||||    
T  6684091 atttagtaacacttaaaaattgtaacttaatcaagaaaaatgttactaattaaatttagtaaca 6684154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 14669449 - 14669350
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||| | |||| | |  ||||||||| |||||  |||||||||||||    
T  14669449 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaataattgttaggtaaagtccgtgttactaaa 14669350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 23264617 - 23264491
Alignment:
Q  57 ctacaacataattaagatttagtaacagt--tgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gt 153  Q
    ||||||||||||| |||| |||||| | |  |||||| ||| ||||||||||||||| ||||||||| |||||||||||||| | |   |||||||| ||    
T  23264617 ctacaacataattgagatctagtaagaatattgaaaattgttactaaatcaagaaaattgttactaattaaatttagtaacattcgaacaattgttaggt 23264518  T
Q  154 aaaacccgtgttactaaatagcatcag 180  Q
    |||| ||||||||||||| ||| ||||    
T  23264517 aaaatccgtgttactaaagagcttcag 23264491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 29668036 - 29667955
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaa--gaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||||| |||| | |||||| ||||||| |||||| |||||||  ||||||||||||||| ||||||||||||||    
T  29668036 ctacaacataattgagatcttgtaacaattgaaaattgtaacgaaatcaaaagaaaaatgttactaattaaatttagtaaca 29667955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 23904469 - 23904392
Alignment:
Q  59 acaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||| |||| |||||||| ||||||| ||  ||||||| |||||||| |||||||||| ||||||||||||    
T  23904469 acaacataattgagatctagtaacacttgaaaattgctactaaatgaagaaaaaagttactaaatcaatttagtaaca 23904392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 34374820 - 34374885
Alignment:
Q  71 agatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||| ||||||| || |||||||||| ||||||||||||||||||||||| || |||| ||||||    
T  34374820 agattaagtaacaattaaaaaatgtaattaaatcaagaaaaatgttactaattatattttgtaaca 34374885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 17719826 - 17719778
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaa 121  Q
    |||||| |||| ||||||| |||||||||||||||||||||||||||||    
T  17719826 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaa 17719778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 4591138 - 4591192
Alignment:
Q  64 ataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttac 118  Q
    |||||||| ||||||||||| ||||||| | | ||||||||||||||||||||||    
T  4591138 ataattaacatttagtaacatttgaaaattattactaaatcaagaaaaatgttac 4591192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 197 - 391
Target Start/End: Complemental strand, 1612784 - 1612584
Alignment:
Q  197 agtgcacatccatagccccactagtttctggaatgcaatatcctctagcatgcctatgattagcccccttagctttcatcaccataaattgaccaaaagg 296  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| || || ||||| ||||||    
T  1612784 agtgcacatccatagccccactagtttctgcaatgcaatatcctcaagcatgcctacgattagcccccttagctttcatcatcacaagttgacaaaaagg 1612685  T
Q  297 --nnnnnnnnaccttcgaagaacctgcaacaaatttgaaaacatccaaggaataaaattatatgg----atataacaagtcctctgctcatagtctttca 390  Q
              ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    ||||| |||||||||||||| || |||||||    
T  1612684 ttttatttttaccttcgaagaacttgcaacaaatttgaaaacatccaaggaataaaattatatggatatatatatcaagtcctctgctcgtattctttca 1612585  T
Q  391 t 391  Q
    |    
T  1612584 t 1612584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 1613319 - 1613208
Alignment:
Q  70 aagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttact 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||| ||||| ||| |||||||    
T  1613319 aagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttgaccaatttttaggtaaagcccctgttact 1613220  T
Q  169 aaatagcatcag 180  Q
    ||||||| ||||    
T  1613219 aaatagcttcag 1613208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 57 - 135
Target Start/End: Original strand, 5498459 - 5498537
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaac 135  Q
    ||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||    
T  5498459 ctacaacataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaac 5498537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 182
Target Start/End: Complemental strand, 16457450 - 16457324
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaa 155  Q
    ||||||||| ||| ||||| |  |||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||   |||||||| ||||    
T  16457450 ctacaacatgattgagattcaacaacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaa 16457351  T
Q  156 aacccgtgttactaaatagcatcagta 182  Q
    | | |||||||||||| ||| ||||||    
T  16457350 agctcgtgttactaaaaagcttcagta 16457324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 13845989 - 13846088
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||   |||||||| ||||| ||||||||||||||    
T  13845989 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 13846088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 27259564 - 27259485
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||||| ||||||||||||| ||||||| | | ||||||||||| ||||||||||||| ||||||||||||||    
T  27259564 ctacaacataattgagatttagtaacaattgaaaactattactaaatcaagcaaaatgttactaattaaatttagtaaca 27259485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 7407855 - 7407758
Alignment:
Q  75 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||| |||| |||   |||||||| ||||| ||||||||||||||    
T  7407855 ttagtaacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 7407758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 1628050 - 1627987
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||||||||    
T  1628050 atttagtaacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaaca 1627987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 2550168 - 2550262
Alignment:
Q  78 gtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||   |||||||| ||||| || |||||||||||    
T  2550168 gtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcctgtgttactaaa 2550262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 1654575 - 1654636
Alignment:
Q  75 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  1654575 ttagtaacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaca 1654636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 9633561 - 9633486
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagt 132  Q
    ||||||||||||| ||||||||||||| ||||||| | | |||||||| | |||||||||||||| ||||||||||    
T  9633561 ctacaacataattgagatttagtaacacttgaaaactattactaaatcgaaaaaaatgttactaattaaatttagt 9633486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 26707860 - 26707919
Alignment:
Q  77 agtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||| |||||||  || ||||||||||||||||||||||||| ||||||||||||||    
T  26707860 agtaacatttgaaaatggttactaaatcaagaaaaatgttactaattaaatttagtaaca 26707919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 174
Target Start/End: Complemental strand, 27713554 - 27713440
Alignment:
Q  58 tacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaa 156  Q
    |||| ||||||| ||||||||||||| || |||||||||||||| ||   ||||| |||||||| |||||||||||||| ||   ||||||||| | |||    
T  27713554 tacagcataattgagatttagtaacatttaaaaaatgtaactaattc---aaaaaagttactaattaaatttagtaacatttaaataattgttaggcaaa 27713458  T
Q  157 acccgtgttactaaatag 174  Q
    |||  |||||||||||||    
T  27713457 acctatgttactaaatag 27713440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 2943297 - 2943254
Alignment:
Q  93 tgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||    
T  2943297 tgtaattaaatcaagaaaaatgttactaattaaatttagtaaca 2943254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 35083000 - 35083067
Alignment:
Q  100 aaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgttag-taaaacccgtgtta 166  Q
    |||||||||||||||||| |||||||||||||||| | |||   ||||||||| |||||||| |||||    
T  35083000 aaatcaagaaaaatgttagtaaataaatttagtaatatttgaacaattgttagataaaacccttgtta 35083067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 36035310 - 36035385
Alignment:
Q  97 actaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    |||||||||||||||||  |||||| |||||||||||||| |||   |||||||| ||||| | ||||||||||||    
T  36035310 actaaatcaagaaaaataatactaattaaatttagtaacaattgtacaattgttaggtaaagctcgtgttactaaa 36035385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 197 - 391
Target Start/End: Original strand, 9249 - 9439
Alignment:
Q  197 agtgcacatccatagccccactagtttctggaatgcaatatcctctagcatgcctatgattagcccccttagctttcatcaccataaattgaccaaaagg 296  Q
    ||||||||||||||||||||||||||| || |||||||||||||| |||||||    |||||||||| |||||||||||||||| || |||||||||||     
T  9249 agtgcacatccatagccccactagtttttg-aatgcaatatcctcaagcatgcgaccgattagcccc-ttagctttcatcaccacaagttgaccaaaag- 9345  T
Q  297 nnnnnnnnaccttcgaagaacctgcaacaaatttgaaaacatccaaggaataaaattatatggatataacaagtcctctgctcatagtctttcat 391  Q
            ||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||||||||| ||||||||    
T  9346 -attttttaccttcgaagaacctgcaacaaatttgaaaacattgaaggaataaaactatatggatatatcaagtcctctgctcatattctttcat 9439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 182
Target Start/End: Original strand, 8726 - 8850
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgttagtaaa 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||| |||||||| ||    |||| || |  ||    
T  8726 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaat-aaacaaaatgttactaaatgaatatagtaacatttaaccaattatttggcaa 8824  T
Q  157 acccgtgttactaaatagcatcagta 182  Q
    |||| |||||||||||||| ||||||    
T  8825 acccctgttactaaatagcttcagta 8850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 8e-37; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 197 - 382
Target Start/End: Original strand, 26701562 - 26701757
Alignment:
Q  197 agtgcacatccatagccccactagttt-ctggaatgcaatatcctctagcatgcctatgattagcccccttagctttcatcaccataaa------ttgac 289  Q
    ||||||||| ||||||||||||||||| ||| |||||||||||||| |||||||| | ||||||||||||||||||||||||||| ||       || |     
T  26701562 agtgcacattcatagccccactagttttctgcaatgcaatatcctcaagcatgccaacgattagcccccttagctttcatcaccacaaccacaagttaaa 26701661  T
Q  290 caaaaggnnnnnnnn---accttcgaagaacctgcaacaaatttgaaaacatccaaggaataaaattatatggatataacaagtcctctgctcata 382  Q
    |||||||           ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||    
T  26701662 caaaaggtttttttttttaccttcgaagaacctgcaacaaatttgaaaacatgaaaggaataaaattatatggatatatcaagtcctctgctcata 26701757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 3234308 - 3234387
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| ||||||||||||    
T  3234308 ctacagcataattaagatttagtaacagttgaaaaatgtaactaaataaaaaaaaatggtactaaattaatttagtaaca 3234387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 14803179 - 14803113
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaat 123  Q
    |||||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  14803179 ctacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgttgctaaat 14803113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 15250173 - 15250107
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaat 123  Q
    |||||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  15250173 ctacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgttgctaaat 15250107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 4685504 - 4685407
Alignment:
Q  75 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    ||||||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||| |||| |||   |||||||| ||||| ||||| ||||||||    
T  4685504 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacacttgaacaattgttaggtaaagcccgtattactaaa 4685407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 26205518 - 26205455
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||| ||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||||    
T  26205518 atttagtgacacttgaaaattataactaaatcaagaaaaatgttactaattaaatttagtaaca 26205455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 26225081 - 26225018
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||| ||||| ||||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  26225081 atttaataacacttgaaaattgtaactaaatcaagaaaaatgatactaattaaatttagtaaca 26225018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 171
Target Start/End: Complemental strand, 26608658 - 26608543
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgttag-taa 155  Q
    ||||||||||||| | || |||||||| ||||||| ||| |  |||||||||||||||||||| | |||||||||||||| |||   ||||||||| |||    
T  26608658 ctacaacataattgacatctagtaacatttgaaaattgttatgaaatcaagaaaaatgttactgattaaatttagtaacatttgaacaattgttagataa 26608559  T
Q  156 aacccgtgttactaaa 171  Q
    | ||| ||||||||||    
T  26608558 agcccatgttactaaa 26608543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 171
Target Start/End: Original strand, 30089716 - 30089831
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgttagtaaa 156  Q
    |||||| |||||| | || |||||||| ||||||| ||| ||||||||||||||||||||||| | || ||||||||||| |||   ||||||||| |||    
T  30089716 ctacaaaataattgacatctagtaacacttgaaaactgttactaaatcaagaaaaatgttactgattatatttagtaacatttgaacaattgttaggaaa 30089815  T
Q  157 a-cccgtgttactaaa 171  Q
    | ||| ||||||||||    
T  30089816 agcccatgttactaaa 30089831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 9242587 - 9242524
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    |||||| |||| ||||||| ||||||||||||||||||| ||||||||| ||||||| ||||||    
T  9242587 atttagcaacacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgtaaca 9242524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 10022121 - 10022184
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||| ||||||| |||||||||||||  |||||||||||||| ||| ||||||||||    
T  10022121 atttagtaacaattgaaaattgtaactaaatcagaaaaaatgttactaattaagtttagtaaca 10022184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 20277476 - 20277400
Alignment:
Q  60 caacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||| ||  |||||||| | ||||| |||||||||||||| |||||| ||| ||| ||||||||||||||    
T  20277476 caacataattatgaactagtaacactcgaaaattgtaactaaatcaaaaaaaatattattaattaaatttagtaaca 20277400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 26619221 - 26619143
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||||| | || |||||||| ||||||  ||| ||||||||||||||||||||||| | |||||||| |||||    
T  26619221 ctacaacataattgacatctagtaacacttgaaat-tgttactaaatcaagaaaaatgttactgattaaatttattaaca 26619143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 26621191 - 26621131
Alignment:
Q  76 tagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    |||||||| ||||||| ||| ||||||| ||||||||||||||| | ||||||||| ||||    
T  26621191 tagtaacacttgaaaattgttactaaattaagaaaaatgttactgattaaatttagcaaca 26621131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 16170268 - 16170331
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    |||||| |||| ||||||| |||||| ||||||  |||| ||||||||| ||||||||||||||    
T  16170268 atttagcaacacttgaaaattgtaaccaaatcacaaaaagtgttactaattaaatttagtaaca 16170331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 29932467 - 29932407
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgtta 117  Q
    |||||||||||||  | |||||||||| ||||||||| | ||||||||  |||||||||||    
T  29932467 ctacaacataattgcgttttagtaacatttgaaaaatattactaaatcgcgaaaaatgtta 29932407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 57 - 172
Target Start/End: Original strand, 41573374 - 41573490
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaa 155  Q
    |||||||| |||| ||||||||||||| |  |||||||||||||||||||||||||||||||||| |||||||||||||||||    |||||||| ||||    
T  41573374 ctacaacaaaattgagatttagtaacattcaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacagttaaacaattgttaggtaa 41573473  T
Q  156 aacccgtgttactaaat 172  Q
    | |||||||||||||||    
T  41573474 accccgtgttactaaat 41573490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 197 - 391
Target Start/End: Original strand, 41573949 - 41574139
Alignment:
Q  197 agtgcacatccatagccccactagtttctggaatgcaatatcctctagcatgcctatgattagcccccttagctttcatcaccataaattgaccaaaagg 296  Q
    |||||||| |||||||||||||||||| || ||||  |||||||| ||||||||   ||| | || ||| |||||||||||| | || |||||||| | |    
T  41573949 agtgcacacccatagccccactagtttttgcaatgttatatcctcaagcatgccatcgatcaacctcctaagctttcatcacaacaagttgaccaagatg 41574048  T
Q  297 nnnnnnnnaccttcgaagaacctgcaacaaatttgaaaacatccaaggaataaaattatatggatataacaagtcctctgctcatagtctttcat 391  Q
            ||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||| || || ||||||||||| ||||||||    
T  41574049 tttttt--accttcgaagaacctgcaacaaatttgaaaacat-aaaggaataaaattatattgatatatcatgt-ctctgctcatattctttcat 41574139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 31342817 - 31342720
Alignment:
Q  75 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgttag-taaaacccgtgttactaaa 171  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||   ||||||||| |||| ||||||||||||||    
T  31342817 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaa 31342720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 60 - 182
Target Start/End: Original strand, 11017441 - 11017564
Alignment:
Q  60 caacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaac 158  Q
    |||||||||| |||| |||||||| |||||||  || ||||||| ||||||| ||||||||| |||||||||||||| |||   |||||||| |||||      
T  11017441 caacataattgagatctagtaacaattgaaaaccgttactaaataaagaaaattgttactaattaaatttagtaacatttgaccaattgttaggtaaagt 11017540  T
Q  159 ccgtgttactaaatagcatcagta 182  Q
    ||||||||||||| ||| ||||||    
T  11017541 ccgtgttactaaaaagcttcagta 11017564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 30267000 - 30267063
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  30267000 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaaca 30267063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 7718182 - 7718245
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||| | ||||||| ||||||||||||||||||||| ||||||| ||||||||||||||    
T  7718182 atttagtaatacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaaca 7718245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 44920955 - 44921017
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||| ||||||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  44920955 atttagtaacacttgaaaattgtaactaaatcaa-aaaaatgttactaattaaatttagtaaca 44921017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 15513664 - 15513763
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    ||||||||||| || |||| ||||| ||||||||||||||||||||||  ||||||| |||||| |||   |||||||| ||||| | ||||||||||||    
T  15513664 atttagtaacaattaaaaattgtaagtaaatcaagaaaaatgttactagttaaattttgtaacacttgaacaattgttaggtaaagctcgtgttactaaa 15513763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 24479137 - 24479212
Alignment:
Q  61 aacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||| |||| |||||||| ||||||| | | |||||||||||| || ||||||||| ||||||||||||||    
T  24479137 aacataattgagatatagtaacacttgaaaattattactaaatcaagataactgttactaattaaatttagtaaca 24479212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 40016591 - 40016667
Alignment:
Q  76 tagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgttag 152  Q
    |||||||| ||||||| | | | ||||||||| ||||||||||| | |||||||||||||| |||  ||||||||||    
T  40016591 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatttagtaacatttgaataattgttag 40016667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 57 - 182
Target Start/End: Original strand, 6403574 - 6403700
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaa 155  Q
    ||||||||| ||||||||||||||||| ||||||  ||||||||||| ||||||||||||||||| |||||||||||||| |||   |||||||| ||||    
T  6403574 ctacaacatgattaagatttagtaacaattgaaatttgtaactaaattaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaa 6403673  T
Q  156 aacccgtgttactaaatagcatcagta 182  Q
    | ||||||||| |||| ||| ||||||    
T  6403674 agcccgtgttattaaaaagcttcagta 6403700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 171
Target Start/End: Original strand, 29553610 - 29553725
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgttag-taa 155  Q
    ||||||||| ||| ||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||| |||| |||   ||||||||| |||    
T  29553610 ctacaacatgattgagatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgttactaattaaatttagcaacatttgagcaattgttagttaa 29553709  T
Q  156 aacccgtgttactaaa 171  Q
    | | ||||||||||||    
T  29553710 agcgcgtgttactaaa 29553725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 25638806 - 25638903
Alignment:
Q  75 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||   |||||||| ||||||||| ||||||||||    
T  25638806 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaaacccatgttactaaa 25638903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 28249176 - 28249079
Alignment:
Q  75 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||   |||||||| ||||| ||||||||||||||    
T  28249176 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 28249079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 57 - 171
Target Start/End: Complemental strand, 6801949 - 6801834
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaa 155  Q
    ||||||||||  | ||||||||||||| ||||||| | | |||||||||| |||||||||||||| ||||||||||||||||||   |||||||| ||||    
T  6801949 ctacaacatagatgagatttagtaacacttgaaaactattactaaatcaataaaaatgttactaattaaatttagtaacagttgaacaattgttaggtaa 6801850  T
Q  156 aacccgtgttactaaa 171  Q
    | ||| ||||||||||    
T  6801849 agcccctgttactaaa 6801834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 17634574 - 17634475
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||   ||||| || ||||| ||||||||||||||    
T  17634574 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttaataacacttgaacaattgataggtaaagcccgtgttactaaa 17634475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 31347333 - 31347444
Alignment:
Q  60 caacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgttag-taaaac 158  Q
    |||||| ||| | ||||||||||| ||||||| |||||| ||||||||||||||| |||||| |||||||||||||| ||| | ||||||||| |||| |    
T  31347333 caacatgattgaaatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgctactaattaaatttagtaacatttgatcaattgttagataaatc 31347432  T
Q  159 ccgtgttactaa 170  Q
    | ||||||||||    
T  31347433 ctgtgttactaa 31347444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 45356210 - 45356116
Alignment:
Q  78 gtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||   |||||||| ||||| ||||||||||||||    
T  45356210 gtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 45356116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 5528740 - 5528803
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  5528740 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaca 5528803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 25637641 - 25637740
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    ||||||||||| ||||||| ||||||||||| ||||||| ||||||||| ||||||||| |||| | |   |||||||| ||||| ||||||||||||||    
T  25637641 atttagtaacacttgaaaattgtaactaaattaagaaaactgttactaattaaatttagcaacactcgaacaattgttaggtaaagcccgtgttactaaa 25637740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 5651061 - 5650953
Alignment:
Q  60 caacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaac 158  Q
    |||||||||| || || ||||||| ||||||| | | ||||||||||||||||||||||||| | ||||||| |||| |||   |||||||| |||||||    
T  5651061 caacataattgagtttcagtaacacttgaaaactattactaaatcaagaaaaatgttactaattcaatttagcaacatttgaacaattgttaggtaaaac 5650962  T
Q  159 ccgtgttac 167  Q
    || ||||||    
T  5650961 ccttgttac 5650953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 19370013 - 19369957
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaattt 129  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||||||| |||||||    
T  19370013 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattt 19369957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 19448445 - 19448501
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaattt 129  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||||||| |||||||    
T  19448445 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattt 19448501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 19532631 - 19532575
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaattt 129  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||||||| |||||||    
T  19532631 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattt 19532575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 29345432 - 29345490
Alignment:
Q  77 agtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaac 135  Q
    ||||||| | ||||| ||||||||||||||||||||| ||||||| |||||||||||||    
T  29345432 agtaacactcgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaac 29345490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 31369225 - 31369150
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagt 132  Q
    |||||||| | || ||||||| ||||| |||||||||| |||||||||| || |||||||||||| ||| ||||||    
T  31369225 ctacaacaaagttgagatttaataacatttgaaaaatgaaactaaatcacgataaatgttactaattaagtttagt 31369150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 5000661 - 5000739
Alignment:
Q  58 tacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    |||||||||||| |||| |||| ||| ||||||| ||| |||| ||||  |||| ||||||||| ||||||||||||||    
T  5000661 tacaacataattgagatctagttacaattgaaaattgttactacatcatcaaaattgttactaattaaatttagtaaca 5000739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 18766914 - 18766970
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaattt 129  Q
    |||||| |||| ||||||| ||||||||||||||||||||| ||| ||| |||||||    
T  18766914 atttagcaacacttgaaaattgtaactaaatcaagaaaaatattattaattaaattt 18766970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 19341540 - 19341476
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaa-aaatgttacta 120  Q
    ||||||||||  ||||||||||||||| || |||| |||||||||||||| || |||||||||||    
T  19341540 ctacaacatatataagatttagtaacaattcaaaattgtaactaaatcaaaaataaatgttacta 19341476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 171
Target Start/End: Original strand, 14997602 - 14997717
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaa 155  Q
    ||||||||| ||| | || |||| ||| ||||||| | | ||||| |||||||||||||||||   |||| ||||||||| |||   |||||||| ||||    
T  14997602 ctacaacatgattgacatctagtgacacttgaaaattattactaattcaagaaaaatgttactggttaaaattagtaacatttgtagaattgttaggtaa 14997701  T
Q  156 aacccgtgttactaaa 171  Q
    ||||| ||||||||||    
T  14997702 aacccatgttactaaa 14997717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 24559110 - 24559035
Alignment:
Q  61 aacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24559110 aacataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaaca 24559035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 171
Target Start/End: Complemental strand, 4881188 - 4881073
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaa 155  Q
    ||||||||||||| | ||  ||||||| ||||||| ||| ||||||||||||||||||||||| | |||||||||||| | |||  ||||||||| ||||    
T  4881188 ctacaacataattgacatccagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaatttagtaatatttgtataattgttaggtaa 4881089  T
Q  156 aacccgtgttactaaa 171  Q
    |  |||||||||||||    
T  4881088 agtccgtgttactaaa 4881073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 47066137 - 47066074
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  47066137 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaaca 47066074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 43600269 - 43600363
Alignment:
Q  78 gtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    |||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| || | |||   |||||||| ||||| ||||||||||||||    
T  43600269 gtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaaacttgaacaattgttaggtaaagcccgtgttactaaa 43600363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 53300348 - 53300411
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||||| ||| ||||||||||||||    
T  53300348 atttagtaacacttgaaaattgtaattaaatcaagaaaaatgttagtaattaaatttagtaaca 53300411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 1685055 - 1684999
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaattt 129  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||||||| |||||||    
T  1685055 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattt 1684999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 1152041 - 1152097
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaattt 129  Q
    |||||| |||| ||||||| ||||||||||| ||||||||||||||||| |||||||    
T  1152041 atttagcaacacttgaaaattgtaactaaattaagaaaaatgttactaattaaattt 1152097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 4923752 - 4923690
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttact 119  Q
    ||||||||||||||| ||  ||||||| || |||| ||| |||||||||||||||||||||||    
T  4923752 ctacaacataattaacatccagtaacacttaaaaattgttactaaatcaagaaaaatgttact 4923690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 26075368 - 26075290
Alignment:
Q  58 tacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    |||||||||||| | || || ||||| ||||||| ||| |||| ||||||||||  |||||||| ||||||||||||||    
T  26075368 tacaacataattgaaatctaataacaattgaaaattgttactagatcaagaaaatggttactaagtaaatttagtaaca 26075290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 4904253 - 4904180
Alignment:
Q  63 cataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||| ||  ||||||| || |||| ||| ||||||||| ||||||||||||| | ||||||||||||||    
T  4904253 cataattaacatccagtaacacttaaaaattgttactaaatcatgaaaaatgttactgattaaatttagtaaca 4904180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 21539354 - 21539311
Alignment:
Q  93 tgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||    
T  21539354 tgtaactaaatcaaggaaaatgttactgattaaatttagtaaca 21539311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 48464049 - 48464100
Alignment:
Q  85 ttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||| ||| ||||||| || |||||||||||||| ||||||||||||||    
T  48464049 ttgaaaattgttactaaataaataaaaatgttactaattaaatttagtaaca 48464100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 57 - 171
Target Start/End: Original strand, 12189933 - 12190048
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaa 155  Q
    ||||||||||||| ||| |||| |||| || |||||||||||||||||||||||||| ||||||| |||||||||||||| |||   |||||||| ||||    
T  12189933 ctacaacataattgagaattagaaacaattaaaaaatgtaactaaatcaagaaaaatattactaattaaatttagtaacatttgaacaattgttaggtaa 12190032  T
Q  156 aacccgtgttactaaa 171  Q
    | ||||||||||||||    
T  12190033 agcccgtgttactaaa 12190048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 16222775 - 16222874
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||  ||||||||||||| |||  ||||||||| ||||| ||||||||||||||    
T  16222775 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaataaaatttagtaacacttgaataattgttaggtaaagcccgtgttactaaa 16222874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 28636884 - 28636979
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgttag 152  Q
    |||||||||||||||||| |||||||| || |||| ||||||||||||||||||||||||||||| | |||||||||||| |||  ||||||||||    
T  28636884 ctacaacataattaagatctagtaacatttaaaaattgtaactaaatcaagaaaaatgttactaattcaatttagtaacatttgaataattgttag 28636979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 897436 - 897515
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    |||||||||||||||||| |||| ||||||||||| ||| ||||||| |||||||||||| |||| ||||||||||||||    
T  897436 ctacaacataattaagatatagttacagttgaaaattgttactaaatgaagaaaaatgttcctaattaaatttagtaaca 897515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 5911783 - 5911704
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||| |||| ||| |||||||| ||||||| | ||||||||||||||||||||||||| | ||||||||||||||    
T  5911783 ctacaacatgattatgatatagtaacacttgaaaattttaactaaatcaagaaaaatgttactgattaaatttagtaaca 5911704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 37097443 - 37097380
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||| |  |||||||||||||    
T  37097443 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactgataaaatttagtaaca 37097380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 51758750 - 51758813
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||| ||||    
T  51758750 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaaca 51758813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 15214324 - 15214385
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaa 134  Q
    ||||||||||| ||||||| || |||||||||||||||||| ||||||| ||||||||||||    
T  15214324 atttagtaacacttgaaaattgcaactaaatcaagaaaaattttactaattaaatttagtaa 15214385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 13208621 - 13208708
Alignment:
Q  85 ttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    ||||||| ||||| ||||| ||||||||||||||||| ||||||||||| || |||    ||||||| ||||||||||||||||||||    
T  13208621 ttgaaaattgtaattaaattaagaaaaatgttactaattaaatttagtaccacttgaaccattgttaggtaaaacccgtgttactaaa 13208708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 3399642 - 3399722
Alignment:
Q  96 aactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaatagc 175  Q
    |||||||||| ||||||||||||||| |||||||||||||| |||   |||||||| |||||| |  ||||||||||||||    
T  3399642 aactaaatcatgaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaaatctatgttactaaatagc 3399722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 39368756 - 39368684
Alignment:
Q  60 caacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagt 132  Q
    |||||||||| | || |||||||   |||||||||| ||||||||||||||||||||||||| |||| |||||    
T  39368756 caacataattgacatctagtaacccatgaaaaatgttactaaatcaagaaaaatgttactaattaaaattagt 39368684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 15193916 - 15193979
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||| |||||||  | ||| |||||||||||||||||||||| |||||||| |||||    
T  15193916 atttagtaacacttgaaaatagcaacgaaatcaagaaaaatgttactaattaaatttattaaca 15193979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 15204613 - 15204654
Alignment:
Q  95 taactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  15204613 taactaaatcaagaaaaatgttgctaactaaatttagtaaca 15204654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 17112901 - 17113002
Alignment:
Q  52 atactctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta 151  Q
    |||| ||||||||||||| | || |||||| | ||||||| ||| |||||||||||||||||  |||||  ||||||| |||||| |||   ||||||||    
T  17112901 atacactacaacataattgaaatctagtaataattgaaaattgttactaaatcaagaaaaatagtactagttaaattttgtaacacttgaacaattgtta 17113000  T
Q  152 gt 153  Q
    ||    
T  17113001 gt 17113002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 18308133 - 18308190
Alignment:
Q  61 aacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttac 118  Q
    ||||||||| | || |||||||| ||||||| ||| ||||||||||||||||||||||    
T  18308133 aacataattgacatctagtaacatttgaaaattgttactaaatcaagaaaaatgttac 18308190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 171
Target Start/End: Complemental strand, 9354508 - 9354393
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaa 155  Q
    ||||||||| ||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||| |||||||| ||||| |||   |||||||| ||||    
T  9354508 ctacaacatgattgagatttagtaacaattgaaaattgtaactgaatcaagaaaaatgttactaattaaatttaataacatttgagcaattgttaggtaa 9354409  T
Q  156 aacccgtgttactaaa 171  Q
    | ||| ||||||||||    
T  9354408 agcccatgttactaaa 9354393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 18191968 - 18191889
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    |||||| |||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||||||||    
T  18191968 ctacaaaataattgagatttagtaacaattgaaaattgtaactaaattaagaaaaatgttactaattaaatttagtaaca 18191889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 30786248 - 30786343
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgttag 152  Q
    |||||||||||||||||| |||||||| ||||||| ||||||| ||||||||||||||||||| | | |||||||||||| |||  ||||||||||    
T  30786248 ctacaacataattaagatctagtaacacttgaaaattgtaacttaatcaagaaaaatgttactgattcaatttagtaacatttgaataattgttag 30786343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 5079165 - 5079068
Alignment:
Q  75 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||   |||||||| ||||| ||||||||||||||    
T  5079165 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 5079068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 9333680 - 9333601
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||| ||| |||||| |||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||||||    
T  9333680 ctacaacatgattgagattttgtaacaattgaaaattgtaacaaaatcaagaaaaatgttactaattaaatttagtaaca 9333601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 12042296 - 12042217
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||||||||||  ||||| | ||||||| ||||||||||||||||||||||||||| | | ||||||||||||    
T  12042296 ctacaacataattaagatccagtaatatttgaaaattgtaactaaatcaagaaaaatgttactgattcaatttagtaaca 12042217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 17037540 - 17037603
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||| |||||||  |||||||||||||||||||||||||||| ||||||||||||||    
T  17037540 atttagtaacacttgaaaatcgtaactaaatcaagaaaaatgttactaattaaatttagtaaca 17037603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 31069065 - 31069002
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||| || |||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  31069065 atttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaaca 31069002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 17535352 - 17535418
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaat 123  Q
    |||||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  17535352 ctacaacaaaattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgttgctaaat 17535418  T

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Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 7410823 - 7410920
Alignment:
Q  75 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    ||||||||| || |||| |||||||||||||| |||||||||||||| ||||||||| |||| |||   |||||||| ||||| ||||||||||||||    
T  7410823 ttagtaacatttcaaaattgtaactaaatcaaaaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaa 7410920  T

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Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 19984976 - 19985071
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgttag 152  Q
    |||||||||||||| ||  |||||||| | |||||  |||||||||||||| ||||||||||||| || ||||||||||| |||  ||||||||||    
T  19984976 ctacaacataattatgaactagtaacactcgaaaatggtaactaaatcaaggaaaatgttactaattagatttagtaacatttgaataattgttag 19985071  T

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Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 11833354 - 11833300
Alignment:
Q  63 cataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgtta 117  Q
    ||||||| ||||||||||||| |||| |||||||||||||||| |||||||||||    
T  11833354 cataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgtta 11833300  T

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Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 23679438 - 23679494
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaattt 129  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||| ||| |||||||    
T  23679438 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttattaattaaattt 23679494  T

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Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 23855373 - 23855317
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaattt 129  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||| ||| |||||||    
T  23855373 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttattaattaaattt 23855317  T

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Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 12004628 - 12004566
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttacta 120  Q
    ||||||||||||| | ||||||||||| ||||||  | ||||||||||||||||||||||||||    
T  12004628 ctacaacataattgaaatttagtaacaattgaaat-tctaactaaatcaagaaaaatgttacta 12004566  T

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Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 31571010 - 31571089
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||||| | || |||||||| ||||||| ||| | |||| |||||||||||||||| | |||| |||||||||    
T  31571010 ctacaacataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaaca 31571089  T

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Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 28080095 - 28080141
Alignment:
Q  71 agatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgtta 117  Q
    ||||||||||||| || |||||||||| |||||||||||||||||||    
T  28080095 agatttagtaacatttaaaaaatgtaattaaatcaagaaaaatgtta 28080141  T

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Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 10869419 - 10869497
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 136  Q
    ||||||||||||| |||| |||  ||| || |||| |||| |||||||| ||||| ||||||||| ||||||||||||||    
T  10869419 ctacaacataattgagatctagatacaattaaaaattgta-ctaaatcatgaaaattgttactaattaaatttagtaaca 10869497  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 31406454 - 31406413
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatg 114  Q
    |||||| |||| ||||||| ||||||||||||||||||||||    
T  31406454 atttagcaacatttgaaaattgtaactaaatcaagaaaaatg 31406413  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 30655295 - 30655231
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaa-aaatgttacta 120  Q
    ||||||||||  | ||||||||||||| || |||| |||||||||||||| || |||||||||||    
T  30655295 ctacaacatatatgagatttagtaacacttcaaaattgtaactaaatcaaaaacaaatgttacta 30655231  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 38450085 - 38450025
Alignment:
Q  57 ctacaacataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgtta 117  Q
    ||||||||||||| | || ||||||||  |||||| ||| || ||||||||||||||||||    
T  38450085 ctacaacataattgacatctagtaacacatgaaaattgttaccaaatcaagaaaaatgtta 38450025  T

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Target: scaffold0576 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 6698 - 6795
Alignment:
Q  75 ttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttggttaattgtta-gtaaaacccgtgttactaaa 171  Q
    ||||||||| || |||| ||||||||||||||||||||||||||||| ||||||||| |||| |||   |||||||| ||||| || |||||||||||    
T  6698 ttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaa 6795  T

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Target: scaffold0684 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 850 - 794
Alignment:
Q  73 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaattt 129  Q
    |||||| |||| ||||||| ||||||||||||||||||| ||||||||| |||||||    
T  850 atttagcaacacttgaaaattgtaactaaatcaagaaaattgttactaattaaattt 794  T

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Target: scaffold0069 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 40789 - 40745
Alignment:
Q  85 ttgaaaaatgtaactaaatcaagaaaaatgttactaaataaattt 129  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||||    
T  40789 ttgaaaattgtaactaaatcaagaaaattgttactaattaaattt 40745  T

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