View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5972_high_16 (Length: 391)

Name: NF5972_high_16
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5972_high_16
NF5972_high_16
[»] chr5 (10 HSPs)
chr5 (61-350)||(25101630-25101919)
chr5 (61-350)||(25160723-25161012)
chr5 (61-173)||(6309112-6309224)
chr5 (155-351)||(42861619-42861821)
chr5 (45-100)||(42861832-42861887)
chr5 (61-157)||(104644-104741)
chr5 (106-173)||(6309076-6309143)
chr5 (19-70)||(4557654-4557705)
chr5 (61-100)||(40691292-40691331)
chr5 (62-100)||(30910215-30910253)
[»] chr8 (10 HSPs)
chr8 (61-350)||(3189140-3189432)
chr8 (61-296)||(22635733-22635968)
chr8 (12-173)||(22815966-22816140)
chr8 (347-391)||(22635966-22636010)
chr8 (61-100)||(41958172-41958211)
chr8 (61-102)||(40841227-40841269)
chr8 (117-207)||(44436441-44436530)
chr8 (61-99)||(44436540-44436578)
chr8 (12-69)||(22635644-22635701)
chr8 (116-173)||(44436438-44436495)
[»] chr1 (13 HSPs)
chr1 (155-368)||(25921677-25921894)
chr1 (178-351)||(18472711-18472890)
chr1 (61-173)||(6836326-6836432)
chr1 (61-100)||(18472638-18472677)
chr1 (61-100)||(43407117-43407156)
chr1 (61-102)||(35761754-35761796)
chr1 (61-100)||(338525-338564)
chr1 (61-100)||(8421979-8422018)
chr1 (61-100)||(9537141-9537180)
chr1 (61-100)||(16075159-16075198)
chr1 (61-100)||(33007401-33007440)
chr1 (61-100)||(37666928-37666967)
chr1 (116-170)||(6836293-6836347)
[»] chr4 (11 HSPs)
chr4 (61-173)||(69708-69820)
chr4 (61-173)||(42899921-42900034)
chr4 (153-305)||(13652788-13652942)
chr4 (153-305)||(13660913-13661067)
chr4 (61-100)||(55162571-55162610)
chr4 (61-103)||(2761810-2761852)
chr4 (119-173)||(55162605-55162661)
chr4 (61-100)||(40459368-40459407)
chr4 (116-170)||(69675-69729)
chr4 (12-57)||(28968880-28968925)
chr4 (61-96)||(49499523-49499559)
[»] chr2 (14 HSPs)
chr2 (61-173)||(44788928-44789040)
chr2 (155-275)||(35670552-35670672)
chr2 (196-339)||(41340068-41340212)
chr2 (193-316)||(28266950-28267077)
chr2 (155-316)||(12774192-12774357)
chr2 (61-103)||(12774142-12774184)
chr2 (61-100)||(18292444-18292483)
chr2 (61-100)||(35670502-35670541)
chr2 (61-100)||(40729177-40729216)
chr2 (117-169)||(34397615-34397667)
chr2 (61-100)||(40447898-40447937)
chr2 (117-171)||(18292492-18292546)
chr2 (12-57)||(40729068-40729113)
chr2 (61-102)||(41340003-41340044)
[»] chr3 (6 HSPs)
chr3 (61-163)||(17542406-17542508)
chr3 (61-100)||(5004470-5004509)
chr3 (61-100)||(7336444-7336483)
chr3 (61-102)||(9104595-9104637)
chr3 (61-100)||(16975737-16975776)
chr3 (101-143)||(11937650-11937692)
[»] chr7 (12 HSPs)
chr7 (155-275)||(48653597-48653717)
chr7 (61-100)||(10288541-10288580)
chr7 (61-100)||(40106227-40106266)
chr7 (61-102)||(22078090-22078132)
chr7 (63-100)||(49170055-49170092)
chr7 (15-66)||(18366974-18367025)
chr7 (61-100)||(48653547-48653586)
chr7 (61-102)||(11036096-11036138)
chr7 (117-206)||(12911491-12911580)
chr7 (132-169)||(49170116-49170153)
chr7 (61-96)||(21491197-21491233)
chr7 (15-71)||(48653490-48653546)
[»] chr6 (7 HSPs)
chr6 (157-351)||(13773185-13773385)
chr6 (12-102)||(26182341-26182432)
chr6 (61-100)||(10751310-10751349)
chr6 (15-70)||(13773076-13773131)
chr6 (61-100)||(23260364-23260403)
chr6 (61-102)||(32449967-32450009)
chr6 (61-100)||(13773133-13773172)
[»] scaffold0013 (1 HSPs)
scaffold0013 (61-173)||(242745-242862)
[»] scaffold1838 (1 HSPs)
scaffold1838 (121-169)||(542-590)


Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 61 - 350
Target Start/End: Original strand, 25101630 - 25101919
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgcc 160  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||||    
T  25101630 caccacacagatgcatataccatgcatgatcatgaaaatgaatgcaatatgatattaacctgccactgaggcaccacacagaatataagtgcaacccgcc 25101729  T
Q  161 actaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaatgcatatgtcatgagaatcaaatggatgcaatccccgccacttaa 260  Q
    ||||||||| |||||| ||||||||||||||||||||||||||| |||  |||||||||||| |||||| |||||||| |||||||||||||||||||||    
T  25101730 actaaggcaacaccaagaattataagtttaacccgccactaaggtacatcaaaaatgcatatatcatgataatcaaatagatgcaatccccgccacttaa 25101829  T
Q  261 actaccacacagaaattgataccacatcatgcacatgacaaaagaaaactctcatataagtcttattgttcttattatttcagttccata 350  Q
     | |||||||||||| | |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  25101830 gcaaccacacagaaaataataccacatcatgcacatgacaaatgaaaactctcataaaagtcttattgttcttattatttcagttccata 25101919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 61 - 350
Target Start/End: Original strand, 25160723 - 25161012
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgcc 160  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||||||    
T  25160723 caccacacagatgcatataccatgcatgatcatgaaaatgaatgcaatatgatattaacctgccactgaggcaccacacagaatataagtgcaacccgcc 25160822  T
Q  161 actaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaatgcatatgtcatgagaatcaaatggatgcaatccccgccacttaa 260  Q
    ||||||||| |||||| ||||||||||||||||||||||||||| |||  |||||||||||| |||||| |||||||| |||||||||||||||||||||    
T  25160823 actaaggcaacaccaagaattataagtttaacccgccactaaggtacatcaaaaatgcatatatcatgataatcaaatagatgcaatccccgccacttaa 25160922  T
Q  261 actaccacacagaaattgataccacatcatgcacatgacaaaagaaaactctcatataagtcttattgttcttattatttcagttccata 350  Q
     | |||||||||||| | |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  25160923 gcaaccacacagaaaataataccacatcatgcacatgacaaatgaaaactctcataaaagtcttattgttcttattatttcagttccata 25161012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 6309224 - 6309112
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgcc 160  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||| | ||||||||    
T  6309224 caccacacagatgcatatgccatgcatgatcatgaaaataaatgcaatatgatattaacccgccactaaggcaccacacagaatataatagtaacccgcc 6309125  T
Q  161 actaaggcaccac 173  Q
    |||||||||||||    
T  6309124 actaaggcaccac 6309112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 155 - 351
Target Start/End: Complemental strand, 42861821 - 42861619
Alignment:
Q  155 cccgccactaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaatgcatatgtcatgagaat-caaatggatgcaatccccgc 253  Q
    ||||||||  ||||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||||||| |||  |||| |||||||| |||||    
T  42861821 cccgccacataggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaaatgcttatgtcatgataataaaaatagatgcaat-cccgc 42861723  T
Q  254 cacttaaactaccacacagaaattgat---accacatcatgcacatgacaaaagaaaactctcatataagtcttat---tgttcttattatttcagttcc 347  Q
    |||||| || ||||||| |||| | ||   || ||||| |  ||||||||||||||| || ||||| ||| || ||   | ||||||||||||||||||     
T  42861722 cacttagacaaccacactgaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggctcatttctcttcttattatttcagttcg 42861623  T
Q  348 ataa 351  Q
    ||||    
T  42861622 ataa 42861619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 42861887 - 42861832
Alignment:
Q  45 ccacacagaaataatccaccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||| || |||||||||||||||||| |||||||||||||||||||    
T  42861887 ccacacagaaataacccgccacacagatgcatatgctatgcatgatcatgaaaatg 42861832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 61 - 157
Target Start/End: Complemental strand, 104741 - 104644
Alignment:
Q  61 caccacacagatgcatatgc-aatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaaccc 157  Q
    ||||||| |||||||||||| ||| ||||||||||||||| |||||||||||||||| ||| | |||| |  ||||||||| ||| |||||| |||||    
T  104741 caccacagagatgcatatgctaatacatgatcatgaaaataaatgcaatatgatatttacctgtcactaagacaccacacataatataattgtaaccc 104644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 6309143 - 6309076
Alignment:
Q  106 aatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgccactaaggcaccac 173  Q
    ||||| ||| |||||||||||| | |||||||||||||| |||| | |||||||||||||| ||||||    
T  6309143 aatataatagtaacccgccactaaggcaccacacagaatataatagtaacccgccactaagacaccac 6309076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 4557654 - 4557705
Alignment:
Q  19 tccagatataacctaccacacaagcaccacacagaaataatccaccacacag 70  Q
    |||||||||||||  ||||||| ||||||||||||||||| || ||||||||    
T  4557654 tccagatataacccgccacacaggcaccacacagaaataacccgccacacag 4557705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 40691331 - 40691292
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  40691331 caccacacagatgcatatgccttgcatgatcatgaaaatg 40691292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 100
Target Start/End: Complemental strand, 30910253 - 30910215
Alignment:
Q  62 accacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  30910253 accacacagatgcatatgccatgcatgatcatggaaatg 30910215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 61 - 350
Target Start/End: Original strand, 3189140 - 3189432
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgcc 160  Q
    ||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| |||||||||||||||    
T  3189140 caccacacaaatgcatatgtcatgcatgatcatgaaaatgaatgcaatatgatattaatccgccaccgaggcaccacacagaatataattgcaacccgcc 3189239  T
Q  161 actaaggcaccaccaataattataagtttaa---cccgccactaaggcacacgaaaaatgcatatgtcatgagaatcaaatggatgcaatccccgccact 257  Q
    |||||||||||||||| ||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  3189240 actaaggcaccaccaagaattataagtttaattacccgccactaaggcacaccaaaaatgcatatgtcatgagaatcaaatagatgcaatccccgccact 3189339  T
Q  258 taaactaccacacagaaattgataccacatcatgcacatgacaaaagaaaactctcatataagtcttattgttcttattatttcagttccata 350  Q
    ||  | |||||||||||| | |||| ||||||||||| ||||||||||||||||||||| || |||| |||||||||||||||||||||||||    
T  3189340 taggcaaccacacagaaagtaatactacatcatgcacgtgacaaaagaaaactctcataaaactcttgttgttcttattatttcagttccata 3189432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 61 - 296
Target Start/End: Original strand, 22635733 - 22635968
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgcc 160  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||    
T  22635733 caccacacagatgcatatgccatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaggcaccacacagaatataattgcaacctgcc 22635832  T
Q  161 actaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaatgcatatgtcatgagaatcaaatggatgcaatccccgccacttaa 260  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||||||||||||||||||| ||||||||||||||||||||     
T  22635833 actaaggcaccaccaataattataagtttaacccgccattaaagcactccaaaaatgcatatgtcatgagaatcaaatagatgcaatccccgccacttag 22635932  T
Q  261 actaccacacagaaattgataccacatcatgcacat 296  Q
     | |||||||||||| | ||||||||||||||||||    
T  22635933 gcaaccacacagaaagtaataccacatcatgcacat 22635968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 22815966 - 22816140
Alignment:
Q  12 tatatgatccagatataacctaccacacaagcaccacacagaaataatcc-----------accacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||| ||           ||| ||||||||||||||| ||||||||||||||||||     
T  22815966 tatatgatccagatataacccgccacacaagcaccacacagaaataacccgctacacaggcaccgcacagatgcatatgccatgcatgatcatgaaaata 22816065  T
Q  101 aatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacc--cgccactaaggcaccac 173  Q
    |||||| |||||||||||||||||||| | |||||||||| ||| |||||| ||||  |||||||||||||||||    
T  22816066 aatgcagtatgatattaacccgccactaaggcaccacacataatataattgtaacccgcgccactaaggcaccac 22816140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 391
Target Start/End: Original strand, 22635966 - 22636010
Alignment:
Q  347 cataatagtcccaaattttatgttcagaaacatatacccacacat 391  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  22635966 cataatagccccaaattttatgttcagaaacatatacccacacat 22636010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 41958172 - 41958211
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  41958172 caccacacagatgcatatgccatgcatgatcatgaaaatg 41958211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 40841227 - 40841269
Alignment:
Q  61 caccacacagatgcatatgc-aatgcatgatcatgaaaatgaa 102  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  40841227 caccacacagatgcatatgctaatgcatgatcatgaaaatgaa 40841269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 207
Target Start/End: Complemental strand, 44436530 - 44436441
Alignment:
Q  117 aacccgccactgaagcaccacacagaatgtaattgcaacccgccactaaggcaccaccaataattataagtttaacccgccactaaggcac 207  Q
    ||||| ||||| | |||||||||||||| |||||  ||||||| |||||||||||||  | || ||||| | |||||||| ||||||||||    
T  44436530 aacccaccactaaggcaccacacagaatataattataacccgcaactaaggcaccacacagaa-tataattataacccgcaactaaggcac 44436441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 44436578 - 44436540
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaat 99  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  44436578 caccacacagatgcatatgccaagcatgatcatgaaaat 44436540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 22635644 - 22635701
Alignment:
Q  12 tatatgatccagatataacctaccacacaagcaccacacagaaataatccaccacaca 69  Q
    |||||||||  |||||||||  ||||||| |||||||| ||||||||||| |||||||    
T  22635644 tatatgatctggatataacccgccacacatgcaccacatagaaataatccgccacaca 22635701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 44436495 - 44436438
Alignment:
Q  116 taacccgccactgaagcaccacacagaatgtaattgcaacccgccactaaggcaccac 173  Q
    |||||||| ||| | |||||||||||||| |||||  ||||||| |||||||||||||    
T  44436495 taacccgcaactaaggcaccacacagaatataattataacccgcaactaaggcaccac 44436438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 7e-59; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 155 - 368
Target Start/End: Complemental strand, 25921894 - 25921677
Alignment:
Q  155 cccgccactaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaatgcatatgtcatgagaatcaaa-tggatgcaatccccgc 253  Q
    |||| |||| ||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||| | || |||||||||||    
T  25921894 cccgtcacttaggcaccacaaagaattataagtttaacccaccactaaggcacaccaaaaatgcatatgtcatgataataaaaatagaggcaatccccgc 25921795  T
Q  254 cacttaaactaccacacagaaattgataccacatcatgcacatgacaaaagaaaactctcatataagtcttattgt---tcttattatttcagttccata 350  Q
    ||||||  | | |||||||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||||   |||||||||||||||||||||    
T  25921794 cacttaggcaatcacacagaaagtaataccacatcatgcacatgacaaaagaaatctctcataaaagtcttattgttcttcttattatttcagttccata 25921695  T
Q  351 atagtcccaaattttatg 368  Q
    | | ||||||||||||||    
T  25921694 acaatcccaaattttatg 25921677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 178 - 351
Target Start/End: Original strand, 18472711 - 18472890
Alignment:
Q  178 aattataagtttaacccgccactaaggcacacgaaaaatgcatatgtcatgagaat-caaatggatgcaatccccgccacttaaactaccacacagaaat 276  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||| |||  |||| |||||||| |||||||||||  | |||| |||||||     
T  18472711 aattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaat-cccgccacttaggcaaccagacagaaag 18472809  T
Q  277 tgat---accacatcatgcacatgacaaaagaaaactctcatataagtcttat---tgttcttattatttcagttccataa 351  Q
    | ||   || ||||| |  ||||||||||||||| || ||||| ||| || ||   | |||||||||||||||||| ||||    
T  18472810 taataacacaacatcttatacatgacaaaagaaatctttcataaaaggctcatttctcttcttattatttcagttcgataa 18472890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 6836432 - 6836326
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgcc 160  Q
    |||||||||||||||||||| ||||||||||| |||||| ||||| | ||||||||||||||||||| |  ||||||     || |||| | ||||||||    
T  6836432 caccacacagatgcatatgccatgcatgatcaggaaaataaatgc-acatgatattaacccgccactaagacaccac-----atataatcgtaacccgcc 6836339  T
Q  161 actaaggcaccac 173  Q
    |||||||||||||    
T  6836338 actaaggcaccac 6836326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 18472638 - 18472677
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  18472638 caccacacagatgcatatgctatgcatgatcatgaaaatg 18472677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 43407117 - 43407156
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  43407117 caccacacagatgcatatgccatgcatgatcatgaaaatg 43407156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 35761754 - 35761796
Alignment:
Q  61 caccacacagatgcatatgc-aatgcatgatcatgaaaatgaa 102  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  35761754 caccacacagatgcatatgctaatgcatgatcatgaaaatgaa 35761796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 338564 - 338525
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  338564 caccacacagatgcatatgacatgcatgatcatgaaaatg 338525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 8422018 - 8421979
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  8422018 caccacatagatgcatatgccatgcatgatcatgaaaatg 8421979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 9537141 - 9537180
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  9537141 caccacacaaatgcatatgccatgcatgatcatgaaaatg 9537180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 16075198 - 16075159
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  16075198 caccacacagatgcatttgccatgcatgatcatgaaaatg 16075159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 33007401 - 33007440
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  33007401 caccacacagatgcatatgctatgcatgattatgaaaatg 33007440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 37666928 - 37666967
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  37666928 caccacacagatgcatatgacatgcatgatcatgaaaatg 37666967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 6836347 - 6836293
Alignment:
Q  116 taacccgccactgaagcaccacacagaatgtaattgcaacccgccactaaggcac 170  Q
    |||||||||||| | |||||||||||||| |||| | ||||||||||| ||||||    
T  6836347 taacccgccactaaggcaccacacagaatataatagtaacccgccacttaggcac 6836293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 69820 - 69708
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgcc 160  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||| | ||||||||    
T  69820 caccacacagatgcatatgccatgcatgatcatgaaaataaatgcaatatgatattaacccgccactaaggcaccacacagaatataatcgtaacccgcc 69721  T
Q  161 actaaggcaccac 173  Q
    |||||||||||||    
T  69720 actaaggcaccac 69708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 42899921 - 42900034
Alignment:
Q  61 caccacacagatgcatatgc-aatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgc 159  Q
    ||||||||||||||||||   |||||||||| |||||||| ||||||||||||||| | | || |||| || ||||||||||||| |||||| |||  |     
T  42899921 caccacacagatgcatatattaatgcatgattatgaaaataaatgcaatatgatataatctcgtcactaaaacaccacacagaatataattgtaacatgt 42900020  T
Q  160 cactaaggcaccac 173  Q
    ||||||||||||||    
T  42900021 cactaaggcaccac 42900034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 305
Target Start/End: Complemental strand, 13652942 - 13652788
Alignment:
Q  153 aacccgccactaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaatgcatatgtcatgagaatcaa-atggatgcaatcccc 251  Q
    ||||||||||| ||| ||||| || ||| |||||||||||||||||| |||||||||   |||| ||||||||| || ||| ||  | ||||||||||||    
T  13652942 aacccgccacttaggtaccacaaagaataataagtttaacccgccacaaaggcacac--caaatacatatgtcacgataataaaggtagatgcaatcccc 13652845  T
Q  252 gccacttaaactaccacacagaaattgataccac---atcatgcacatgacaaaaga 305  Q
    |||||| |  | | |||||| ||| | ||| |||   ||||||||||||||||||||    
T  13652844 gccactaaggcaatcacacaaaaaataatagcacattatcatgcacatgacaaaaga 13652788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 305
Target Start/End: Complemental strand, 13661067 - 13660913
Alignment:
Q  153 aacccgccactaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaatgcatatgtcatgagaatcaa-atggatgcaatcccc 251  Q
    ||||||||||| ||| ||||| || ||| |||||||||||||||||| |||||||||   |||| ||||||||| || ||| ||  | ||||||||||||    
T  13661067 aacccgccacttaggtaccacaaagaataataagtttaacccgccacaaaggcacac--caaatacatatgtcacgataataaaggtagatgcaatcccc 13660970  T
Q  252 gccacttaaactaccacacagaaattgataccac---atcatgcacatgacaaaaga 305  Q
    |||||| |  | | |||||| ||| | ||| |||   ||||||||||||||||||||    
T  13660969 gccactaaggcaatcacacaaaaaataatagcacattatcatgcacatgacaaaaga 13660913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 55162610 - 55162571
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  55162610 caccacacagatgcatatgccatgcatgatcatgaaaatg 55162571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 2761810 - 2761852
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatgaat 103  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
T  2761810 caccacacaaatgcatatgccatgcatgatcatgaaaatgaat 2761852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 55162661 - 55162605
Alignment:
Q  119 cccgccactgaagcaccacacagaatgtaattgcaa--cccgccactaaggcaccac 173  Q
    ||||||||| | |||||||||||||| |||||||||  |||||||||||||||||||    
T  55162661 cccgccactaaggcaccacacagaatataattgcaattcccgccactaaggcaccac 55162605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 40459407 - 40459368
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  40459407 caccacacagatgcatatgacatgcatgatcatgaaaatg 40459368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 69729 - 69675
Alignment:
Q  116 taacccgccactgaagcaccacacagaatgtaattgcaacccgccactaaggcac 170  Q
    |||||||||||| | |||||||||||||| |||| | ||||||||||| ||||||    
T  69729 taacccgccactaaggcaccacacagaatataatagtaacccgccacttaggcac 69675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 28968880 - 28968925
Alignment:
Q  12 tatatgatccagatataacctaccacacaagcaccacacagaaata 57  Q
    |||||||||| |||||||||  ||||||| ||||||||||||||||    
T  28968880 tatatgatccggatataacccgccacacatgcaccacacagaaata 28968925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 49499559 - 49499523
Alignment:
Q  61 caccacacagatgcatatgc-aatgcatgatcatgaa 96  Q
    |||||||||||||||||||| ||||||||||||||||    
T  49499559 caccacacagatgcatatgctaatgcatgatcatgaa 49499523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 44789040 - 44788928
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgcc 160  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||| |||||| ||||| ||    
T  44789040 caccacacagatgcatatgccttgcatgatcatgaaaataaatgcaatatgatattagcccgccactaaggcaccacacagaatataattgtaaccctcc 44788941  T
Q  161 actaaggcaccac 173  Q
    |||||||||||||    
T  44788940 actaaggcaccac 44788928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 155 - 275
Target Start/End: Original strand, 35670552 - 35670672
Alignment:
Q  155 cccgccactaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaatgcatatgtcatgagaat-caaatggatgcaatccccgc 253  Q
    ||||||||  ||||||||| || |||||||||||||||||||||||||||||||| |||||| | |||||||||| |||  |||| |||||||| |||||    
T  35670552 cccgccacataggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaaattcttatgtcatgataataaaaatagatgcaat-cccgc 35670650  T
Q  254 cacttaaactaccacacagaaa 275  Q
    ||||||  | ||||||||||||    
T  35670651 cacttaggcaaccacacagaaa 35670672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 196 - 339
Target Start/End: Original strand, 41340068 - 41340212
Alignment:
Q  196 ccactaaggcacacgaaaaatgcatatgtcatgagaatcaaa-tggatgcaatccccgccacttaaactaccacacagaaattgataccacatcatgcac 294  Q
    |||||||||||||| ||||||||| || | |||||||| ||| |  ||||||||||| | ||||| || |||||||||||| | ||||||||||||||||    
T  41340068 ccactaaggcacaccaaaaatgcacatattatgagaataaaaatatatgcaatccccacaacttagacaaccacacagaaaataataccacatcatgcac 41340167  T
Q  295 atgacaaaagaaaactctcatataagtcttattgttcttattatt 339  Q
    | ||||||| ||| || ||||| ||  ||||||  ||||||||||    
T  41340168 acgacaaaaaaaatctttcataaaaagcttatttctcttattatt 41340212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 193 - 316
Target Start/End: Original strand, 28266950 - 28267077
Alignment:
Q  193 ccgccactaaggcacacgaaaaatgcatatgtcatgagaat-caaatggatgcaatccccgccacttaaactaccacacagaaattgat---accacatc 288  Q
    ||||||||||||||||| |||||||| |||||||||| |||  |||| ||||||||| ||||||||||  | |||||||||||| | ||   || |||||    
T  28266950 ccgccactaaggcacaccaaaaatgcttatgtcatgataataaaaatagatgcaatctccgccacttaggcaaccacacagaaagtaataacacaacatc 28267049  T
Q  289 atgcacatgacaaaagaaaactctcata 316  Q
    ||| ||||||||||||||| || |||||    
T  28267050 atgtacatgacaaaagaaatctttcata 28267077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 155 - 316
Target Start/End: Original strand, 12774192 - 12774357
Alignment:
Q  155 cccgccactaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaatgcatatgtcatgagaat-caaatggatgcaatccccgc 253  Q
    ||||||||| ||||||||| || |  ||| |  ||| |||||||||||||||||| | |||||| |||||||||| |||  |||  ||||||||||||||    
T  12774192 cccgccacttaggcaccacaaagagatatgatattatcccgccactaaggcacaccacaaatgcttatgtcatgataataaaaacagatgcaatccccgc 12774291  T
Q  254 cacttaaactaccacacagaa---attgataccacatcatgcacatgacaaaagaaaactctcata 316  Q
    ||||||  | |||||||||||   | | |||| |||||||| ||||||||||||||| || |||||    
T  12774292 cacttaggcaaccacacagaaagtaataatacaacatcatgtacatgacaaaagaaatctttcata 12774357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 12774142 - 12774184
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatgaat 103  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  12774142 caccacacagatgcatatgcgatgcatgatcatgaaaatgaat 12774184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 18292444 - 18292483
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  18292444 caccacacagatgcatatgccatgcatgatcatgaaaatg 18292483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 35670502 - 35670541
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  35670502 caccacacagatgcatatgctatgcatgatcatgaaaatg 35670541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 40729177 - 40729216
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  40729177 caccacacagatgcatatgccatgcatgatcatgaaaatg 40729216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 34397615 - 34397667
Alignment:
Q  117 aacccgccactgaagcaccacacagaatgtaattgcaacccgccactaaggca 169  Q
    ||||||||||| | |||||||||||||| |||||  |||||||||||||||||    
T  34397615 aacccgccactaaggcaccacacagaatataattataacccgccactaaggca 34397667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 40447937 - 40447898
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  40447937 caccacacagatgcatatgacatgcatgatcatgaaaatg 40447898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 18292492 - 18292546
Alignment:
Q  117 aacccgccactgaagcaccacacagaatgtaattgcaacccgccactaaggcacc 171  Q
    ||||||||||| | |||||||||| ||| |||||  |||||||||||||||||||    
T  18292492 aacccgccactaaggcaccacacaaaatataattataacccgccactaaggcacc 18292546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 40729068 - 40729113
Alignment:
Q  12 tatatgatccagatataacctaccacacaagcaccacacagaaata 57  Q
    |||||||||| |||||||||| |||||||  |||||||||||||||    
T  40729068 tatatgatccggatataacctgccacacagacaccacacagaaata 40729113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 41340003 - 41340044
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatgaa 102  Q
    |||||||||| ||||||||| ||||||| |||||||||||||    
T  41340003 caccacacaggtgcatatgccatgcatggtcatgaaaatgaa 41340044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 17542406 - 17542508
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaatatgatattaacccgccactgaagcaccacacagaatgtaattgcaacccgcc 160  Q
    |||||||||||| ||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| | |||||||||||||| |||| | ||||||||    
T  17542406 caccacacagatacatatgcgatgcatgatcacgaaaataaatgcaatatgatattaacccgccactaaggcaccacacagaatataatagtaacccgcc 17542505  T
Q  161 act 163  Q
    |||    
T  17542506 act 17542508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 5004470 - 5004509
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  5004470 caccacacagatgcatatgccatgcatgatcatgaaaatg 5004509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 7336444 - 7336483
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  7336444 caccacacagatgcatatgccatgcatgatcatgaaaatg 7336483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 9104637 - 9104595
Alignment:
Q  61 caccacacagatgcatatgc-aatgcatgatcatgaaaatgaa 102  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  9104637 caccacacagatgcatatgctaatgcatgatcatgaaaatgaa 9104595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 16975776 - 16975737
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  16975776 caccacacagatgcatatgccatggatgatcatgaaaatg 16975737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 11937650 - 11937692
Alignment:
Q  101 aatgcaatatgatattaacccgccactgaagcaccacacagaa 143  Q
    ||||||||||||||||| ||||||||| | |||||||||||||    
T  11937650 aatgcaatatgatattatcccgccactaaggcaccacacagaa 11937692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 275
Target Start/End: Original strand, 48653597 - 48653717
Alignment:
Q  155 cccgccactaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaatgcatatgtcatgagaat-caaatggatgcaatccccgc 253  Q
    ||||||||| ||||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||||||| |||  |||| |||||||| |||||    
T  48653597 cccgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaaatgcttatgtcatgataataaaaatagatgcaat-cccgc 48653695  T
Q  254 cacttaaactaccacacagaaa 275  Q
    ||||||  | ||||||||||||    
T  48653696 cacttaggcaaccacacagaaa 48653717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 10288541 - 10288580
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  10288541 caccacacagatgcatatgccatgcatgatcatgaaaatg 10288580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 40106266 - 40106227
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  40106266 caccacacagatgcatatgccatgcatgatcatgaaaatg 40106227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 22078132 - 22078090
Alignment:
Q  61 caccacacagatgcatatgc-aatgcatgatcatgaaaatgaa 102  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  22078132 caccacacagatgcatatgctaatgcatgatcatgaaaatgaa 22078090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 49170055 - 49170092
Alignment:
Q  63 ccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||| |||||||||||||||||||    
T  49170055 ccacacagatgcatatgccatgcatgatcatgaaaatg 49170092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 66
Target Start/End: Original strand, 18366974 - 18367025
Alignment:
Q  15 atgatccagatataacctaccacacaagcaccacacagaaataatccaccac 66  Q
    ||||||| |||||||||  ||||||| ||||||||||||||||| |||||||    
T  18366974 atgatccggatataacccgccacacatgcaccacacagaaataacccaccac 18367025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 48653547 - 48653586
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  48653547 caccacacagatgcatatgttatgcatgatcatgaaaatg 48653586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 11036096 - 11036138
Alignment:
Q  61 caccacacagatgcatatgc-aatgcatgatcatgaaaatgaa 102  Q
    ||||||| |||||||||||| ||||||||||||||||||||||    
T  11036096 caccacagagatgcatatgctaatgcatgatcatgaaaatgaa 11036138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 12911491 - 12911580
Alignment:
Q  117 aacccgccactgaagcaccacacagaatgtaattgcaacccgccactaaggcaccaccaataattataagtttaacccgccactaaggca 206  Q
    ||||||||||| | | |||||||||||| |||||  ||||||||||| ||||||||| || || ||| |  |||||| | ||||||||||    
T  12911491 aacccgccactaaggtaccacacagaatataattataacccgccacttaggcaccactaagaaatatgatattaacctgtcactaaggca 12911580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 49170116 - 49170153
Alignment:
Q  132 caccacacagaatgtaattgcaacccgccactaaggca 169  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  49170116 caccacacagaatataattacaacccgccactaaggca 49170153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 21491197 - 21491233
Alignment:
Q  61 caccacacagatgcatatgc-aatgcatgatcatgaa 96  Q
    |||||||||||||||||||| ||||||||||||||||    
T  21491197 caccacacagatgcatatgctaatgcatgatcatgaa 21491233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 48653490 - 48653546
Alignment:
Q  15 atgatccagatataacctaccacacaagcaccacacagaaataatccaccacacaga 71  Q
    ||||||| |||||||||  ||||||| ||||| ||||||||||| || |||||||||    
T  48653490 atgatccggatataacccgccacacaggcaccgcacagaaataacccgccacacaga 48653546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 157 - 351
Target Start/End: Original strand, 13773185 - 13773385
Alignment:
Q  157 cgccactaaggcaccaccaataattataagtttaacccgccactaaggcacacgaaaaatgcatatgtcatgagaat-caaatggatgcaatccccgcca 255  Q
    ||||||| ||||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||||||| |||  |||| |||||||| |||||||    
T  13773185 cgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacaccaaaaatgcttatgtcatgataataaaaatagatgcaat-cccgcca 13773283  T
Q  256 cttaaactaccacacagaaattgata---ccacatcatgcacatgacaaaagaaaactctcatataagtcttat---tgttcttattatttcagttccat 349  Q
    ||||  | |||||||||||| | |||   | ||||| |  ||||||||||||||| || ||||| ||| || ||   | |||||||||||||||||| ||    
T  13773284 cttaggcaaccacacagaaagtaataactcaacatcctatacatgacaaaagaaatctttcataaaaggctcatttctcttcttattatttcagttcgat 13773383  T
Q  350 aa 351  Q
    ||    
T  13773384 aa 13773385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 26182341 - 26182432
Alignment:
Q  12 tatatgatccagatataacctaccacacaagcaccacacagaaataatccaccacacagatgcata-tgcaatgcatgatcatgaaaatgaa 102  Q
    |||||||||| ||||||||| |||||| | |||||||||||||||||||| |||||||||||||||    ||||||||||||||||||||||    
T  26182341 tatatgatccggatataacccaccacataggcaccacacagaaataatccgccacacagatgcatacattaatgcatgatcatgaaaatgaa 26182432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 10751310 - 10751349
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  10751310 caccacacagatgcatatgccatgcatgatcatgaaaatg 10751349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 13773076 - 13773131
Alignment:
Q  15 atgatccagatataacctaccacacaagcaccacacagaaataatccaccacacag 70  Q
    ||||||| ||||||| | |||||||||||||||||||||| |||||| ||||||||    
T  13773076 atgatccggatataatccaccacacaagcaccacacagaagtaatccgccacacag 13773131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 23260364 - 23260403
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  23260364 caccacacagatgcatatgccatgcatgatcatgaaaatg 23260403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 32449967 - 32450009
Alignment:
Q  61 caccacacagatgcatatgc-aatgcatgatcatgaaaatgaa 102  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  32449967 caccacacagatgcatatgctaatgcatgatcatgaaaatgaa 32450009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 13773133 - 13773172
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatg 100  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  13773133 caccacacagatgtatatgctatgcatgatcatgaaaatg 13773172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 242745 - 242862
Alignment:
Q  61 caccacacagatgcatatgcaatgcatgatcatgaaaatgaatgcaat----atgatattaacccgccactgaagcaccacacagaatgtaattgcaa-c 155  Q
    ||||||||| |||||||||| ||||| |||||||||||| ||||||||    |||||| ||||||  |||  | |||||||||| ||| |||||| || |    
T  242745 caccacacatatgcatatgctatgcaagatcatgaaaataaatgcaatatgcatgatagtaacccatcaccaaggcaccacacataatataattggaatc 242844  T
Q  156 ccgccactaaggcaccac 173  Q
    ||||||| ||||||||||    
T  242845 ccgccacgaaggcaccac 242862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 590 - 542
Alignment:
Q  121 cgccactgaagcaccacacagaatgtaattgcaacccgccactaaggca 169  Q
    ||||||| | |||||||||||||| |||||  |||||||||||||||||    
T  590 cgccactaaggcaccacacagaatataattataacccgccactaaggca 542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University