View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_high_19 (Length: 371)
Name: NF5972_high_19
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 99 - 353
Target Start/End: Complemental strand, 3220099 - 3219841
Alignment:
| Q |
99 |
gggatattacatttacaactctcatctctataaactcatctt---ttttaactcatcctccattcaaaa-tctcaagtacatttccttaaatatattgta |
194 |
Q |
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| T |
3220099 |
gggatattacatttacaactctcatctctataaactcatcttcttttttaactcatcctccattcaaaaatctcaagtacatttccttaaatatattgta |
3220000 |
T |
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| Q |
195 |
gatcattgtatgatattaaagttgaagcaacataccattgaaaacattaattaggataaaatatcaaatctttgatctgactctaataactaaaagaaga |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3219999 |
gatcattgtatgatattaaagttgaagcaacataccattgaaaacattaattaggataaaatatcaaatctttgatctgactctaataactaaaagaaga |
3219900 |
T |
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| Q |
295 |
gttaacgtgagtgatatcagtggcattaataagtttatacgatgaaagtatgaaaccaa |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3219899 |
gttaacgtgagtgatatcagtggcattaataagtttatacgatgaaagtatgaaaccaa |
3219841 |
T |
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