View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_high_2 (Length: 552)
Name: NF5972_high_2
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 19 - 541
Target Start/End: Original strand, 33835002 - 33835520
Alignment:
| Q |
19 |
aattgtccttgtttaaaatattatctcatcatatatgagactctaaacaacttttgtatacggaannnnnnnnaagtgttgaattgactgatacaaaaga |
118 |
Q |
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| T |
33835002 |
aattgtcctcgtttaaaatattatctcatcatatatgagactctaaacaacttttgtgtacggaattttttttaagtgtcgaattgacggatacaaaaga |
33835101 |
T |
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| Q |
119 |
ttaatgtgatccaaaattttaattttagattttctttaatttcaaggtttgaattagtgatttacttaagaactaatagtggatgagatcactaaccatg |
218 |
Q |
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| T |
33835102 |
ttaatgtgatccaaaattttaattttagattttctttaatttcaaggcttgaattagtgatttacttaacaactaatagtggat-----cactaaccatg |
33835196 |
T |
|
| Q |
219 |
taatgaggaatttatcatccaacttgttaatgacattcacaacaaggttgtcattagtgatggcttcaattgtagggcctggaaattggccattgataag |
318 |
Q |
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| T |
33835197 |
taatgaggaatttatcatccaacttgttaatgacattcacaacaatgttgtcattagtgatggcttcaattgtagggcctggaaattggccattgataag |
33835296 |
T |
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| Q |
319 |
aataccctggtaaaagagtaaataa-tatcaataactttttcaaatgtgaaagaattgtcatttcaaacagcagtggtaaaatagactaacctcttgagg |
417 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33835297 |
aataccctggtaaaagagtaaataaatatcactaactttttcaaatgtgaaagaattgtcatttcaaacagcagtggtaaaatagactaacctcttgagg |
33835396 |
T |
|
| Q |
418 |
aacaccaagaggaaaaattgttccctttgtaatttcccatgtgaagaactgatatcggtcttctgcagtaaccgaaattgcactccaacaagccaaaatt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33835397 |
aacaccaagaggaaaaattgttccctttgtaatttcccatgtgaagaactgatatcggtcttctgcagtaaccgaaattgcactccaacaagccaaaatt |
33835496 |
T |
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| Q |
518 |
ccaagaaaaattggagtgatgatg |
541 |
Q |
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|||| ||||||||||||||||||| |
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| T |
33835497 |
ccaaaaaaaattggagtgatgatg |
33835520 |
T |
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