View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_high_20 (Length: 354)
Name: NF5972_high_20
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 47627761 - 47628053
Alignment:
| Q |
11 |
caaaggtgacta-cttatagtgagaaaattaaaggttgttgttttaacaagctcgtaattttttatgatatacatataatatctacttataatttgttaa |
109 |
Q |
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| T |
47627761 |
caaaggtgactaacatatagtgagaaaattaaaggttgttgttttaacaagctcgtaattttttatgatatacatattatatctacttataatttgttaa |
47627860 |
T |
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| Q |
110 |
ctattaatttatatgctcaaatatgtaatcaatccctataaatatgggtcgtttaagtttttgtccctaaacttacctattctttcaaacagttagtaga |
209 |
Q |
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| T |
47627861 |
ctattaacttatatgcttaaatatgtaatcaatccttataaatatgggtcgtttaagtttttgtccctaaacttacctattctttcaaacagttagtaga |
47627960 |
T |
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| Q |
210 |
ataagttcctcacaagtttttt-cttgagttattttgaacagcttactaaaataatctgaaacagcttatgagatgatagtagtcatcacatgtggg |
305 |
Q |
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| T |
47627961 |
ataagttcctcacaagttttttgcttgagttattttgaacagcttact-aaataatccgaaacagcttatga---gatagtagtcatcacatgtggg |
47628053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 8258856 - 8258930
Alignment:
| Q |
35 |
aaattaaaggttgttgttttaacaagctcgtaattttttatgatatacatataatatctacttataatttgttaa |
109 |
Q |
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| T |
8258856 |
aaatcaaaggttgttattgtaacaagctcataattttttacgatatgcctacaatatctacatttaatttgttaa |
8258930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 8272274 - 8272348
Alignment:
| Q |
35 |
aaattaaaggttgttgttttaacaagctcgtaattttttatgatatacatataatatctacttataatttgttaa |
109 |
Q |
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| T |
8272274 |
aaatcaaaggttgttattgtaacaagctcataattttttacgatatgcctacaatatctacatttaatttgttaa |
8272348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 39421532 - 39421613
Alignment:
| Q |
28 |
agtgagaaaattaaaggttgttgttttaacaagctcgtaattttttatgatatacatataatatctacttataatttgttaa |
109 |
Q |
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| T |
39421532 |
agtgagaaaatcaaaggttgttattttaacaaactcatgatttgttatggtgtacttctaatatctacctttgatttgttaa |
39421613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 14536137 - 14536218
Alignment:
| Q |
28 |
agtgagaaaattaaaggttgttgttttaacaagctcgtaattttttatgatatacatataatatctacttataatttgttaa |
109 |
Q |
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||||||||||| |||||||||| || ||||| ||||| |||| ||||||| ||| || ||||||||| | |||||| |||| |
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| T |
14536137 |
agtgagaaaatcaaaggttgttattgcaacaaactcgtgatttgttatgatgtacctacaatatctacctttaattttttaa |
14536218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 10106804 - 10106848
Alignment:
| Q |
65 |
taattttttatgatatacatataatatctacttataatttgttaa |
109 |
Q |
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| T |
10106804 |
taattttttaggatatacctataatatctacttttaattttttaa |
10106848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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