View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5972_high_21 (Length: 346)
Name: NF5972_high_21
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_high_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 8528810 - 8528475
Alignment:
| Q |
19 |
aatattgaggttctgaatatccactcaaggtaaaatttta----------------aatctgatggttgatgcttccttacaagtcatagtaattgattg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528810 |
aatattgaggttctgaatatccactcaaggtaaaattttatttttattggcaattgaatctgatggttgatgcttccttacaagtcatagtaattgattg |
8528711 |
T |
|
| Q |
103 |
taatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttacacttatattttaaacttactatttttccattccatttggagaaaagaaga |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528710 |
taatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttacacttatattttaaacttactatttttccattccatttggagaaaagaaga |
8528611 |
T |
|
| Q |
203 |
catgttgttaggttacttaggtagatatattctcacaacgacatgttggagaaaggttgtcatgtttcgtcaatcatttgctttcacagctaatatattt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528610 |
catgttgttaggttacttaggtagatatattctcacaacgacatgttggagaaaggttgtcatgtttcgtcaatcatttgctttcacagctaatatattt |
8528511 |
T |
|
| Q |
303 |
atga---tgtatatatttgttataattttagttctt |
335 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |
|
|
| T |
8528510 |
atgatgttgtatatatttgttatatttttagttctt |
8528475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 59 - 168
Target Start/End: Complemental strand, 8535294 - 8535183
Alignment:
| Q |
59 |
aatctgatggttgatgcttccttacaa-gtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgtta-cactt |
156 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||| ||||||| || |||||||||||||| |||| |||||||||||||||||| || || |
|
|
| T |
8535294 |
aatctgatggttgatgctcccttacaaagtcatagtaattgattttaatcataagacgagtattcaaaggaacttctgtaagtttcctatgttaccagtt |
8535195 |
T |
|
| Q |
157 |
atattttaaact |
168 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8535194 |
atattttaaact |
8535183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 8535122 - 8535045
Alignment:
| Q |
258 |
gttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatga---tgtatatatttgttataattttagtt |
332 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||| ||||||| |
|
|
| T |
8535122 |
gttgtgatgtttcgtcaatcatttgcttttacaactaatatatttatgaagttgtttatatttgttataaatttagtt |
8535045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 212
Target Start/End: Original strand, 8548409 - 8548562
Alignment:
| Q |
59 |
aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttac-actta |
157 |
Q |
| |
|
|||||||||||||||||| || || || ||||||||||| ||| ||||||| || |||||||||||||| | ||||| | ||| | |||||| |||| |
|
|
| T |
8548409 |
aatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataagatgagtattcaaagggtcatgtgtgaattttttgtgttactgctta |
8548508 |
T |
|
| Q |
158 |
tattttaaacttactatttttccattccatttggagaaaagaagacatgttgtta |
212 |
Q |
| |
|
|| ||||||||| ||||||| ||||| ||||||| ||| |||| | |||||||| |
|
|
| T |
8548509 |
ta-tttaaacttcctattttggcattctatttggataaaggaaggcttgttgtta |
8548562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 9075019 - 9075109
Alignment:
| Q |
76 |
ttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgtta-cacttatattttaa |
165 |
Q |
| |
|
|||| ||||||||||||||||| ||| ||||||| || |||| |||||||||||| | || |||||| ||||||| |||||||||||||| |
|
|
| T |
9075019 |
ttccgtacaagtcatagtaattaattttaatcataagatgagttttcaaagggactcgagtgagtttcttatgttaccacttatattttaa |
9075109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 8535365 - 8535333
Alignment:
| Q |
19 |
aatattgaggttctgaatatccactcaaggtaa |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
8535365 |
aatattgaggttctgaatatccactcaaggtaa |
8535333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 1600601 - 1600670
Alignment:
| Q |
63 |
tgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggactt |
132 |
Q |
| |
|
||||||| |||| | || ||||||||||||||||| ||| ||||||| || | ||| ||||||||||||| |
|
|
| T |
1600601 |
tgatggtcgatgttcccatacaagtcatagtaattaattttaatcataagacaagttttcaaagggactt |
1600670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 1600522 - 1600554
Alignment:
| Q |
19 |
aatattgaggttctgaatatccactcaaggtaa |
51 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
1600522 |
aatattgaggtgctgaatatccactcaaggtaa |
1600554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 8677669 - 8677637
Alignment:
| Q |
19 |
aatattgaggttctgaatatccactcaaggtaa |
51 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
8677669 |
aatattgaggtgctgaatatccactcaaggtaa |
8677637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 9442971 - 9442625
Alignment:
| Q |
19 |
aatattgaggttctgaatatccactcaaggtaaaatttta----------------aatctgatggttgatgcttccttacaagtcatagtaattgattg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9442971 |
aatattgaggttctgaatatccactcaaggtaaaattttatttttattggcaattgaatctgatggttgatgcttctttacaagtcatagtaattgattg |
9442872 |
T |
|
| Q |
103 |
taatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttacacttatattttaaacttactatttttccattccatttggagaaaagaaga |
202 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
9442871 |
taatcatgagatgagtattcaaagggacttgtgtaagtttcctatgttacacttatattttaaacttactattttgccattccatttggagaaaagaaaa |
9442772 |
T |
|
| Q |
203 |
catgttgttaggttacttaggtagatatattctcacaacgacatgttg-----------gagaaaggttgtcatgtttcgtcaatcatttgctttcacag |
291 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
9442771 |
catgttgttaggttacttcggttgatatattctcacaacgacatgttggagacatgttggagaaaggttgtgatgtttcgtcaatcatttgctttcgcag |
9442672 |
T |
|
| Q |
292 |
ctaatatatttatga---tgtatatatttgttataattttagttctt |
335 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
9442671 |
ctaatatatttatgatgttgtatatatttgttatatttttagttctt |
9442625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University