View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5972_high_22 (Length: 338)
Name: NF5972_high_22
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_high_22 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 32 - 338
Target Start/End: Complemental strand, 31334482 - 31334182
Alignment:
| Q |
32 |
ttgaatatgaaacttccatctcatacataaaatttatatatttgtaagatattattacaacttataattgataatcaagcatgagttcacattaccataa |
131 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31334482 |
ttgaatatgaaactcctatctcatacataaaatttatatttttgtaagatattattacaatttataattgataatcaaacatgagttcacattaccataa |
31334383 |
T |
|
| Q |
132 |
tttggtgatcttttattttgtcagcatgagtttgtcagaaacacgttgacattgtaattttattacagccgtataaagtgtaacttttgcaaaaaatatt |
231 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31334382 |
tttggtgatcttttattttgtc-----gagtttgacagaaacacgttgacattgtaattttattacagccgtataaagtgtaacttttgcaaaaaatatt |
31334288 |
T |
|
| Q |
232 |
gtcatttaccatgatttcatcaagctcagggggaatccaaacacaagtagaaagaaaatcagcaatcttatggttcttgcccttttcgaagaaaatctac |
331 |
Q |
| |
|
|||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31334287 |
gtcatttaccttgatttcatcaaactca-ggggaatccaaacacaagtagaaagaaaatcagcaatcttatggttcttgcctttttcgaagaaaatctac |
31334189 |
T |
|
| Q |
332 |
aatccta |
338 |
Q |
| |
|
||||||| |
|
|
| T |
31334188 |
aatccta |
31334182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 31322250 - 31322102
Alignment:
| Q |
18 |
caacacaaagatgcttgaatatgaaacttccatctcatacataaaatttatatatttgtaagatattattacaacttataattgata----atcaagcat |
113 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||||||||| |||||| || | |||||| ||||||| ||||||||||||| |||||| ||||| ||| |
|
|
| T |
31322250 |
caacacaatgatgcttgaacatgaaacatccatctca--cataaagttaa-atattttgaagatatgattacaacttatatttgatatataatcaaacat |
31322154 |
T |
|
| Q |
114 |
gagttcacattaccataatttggtgatcttttattttgtcagcatgagtttg |
165 |
Q |
| |
|
|||| |||||||||||||||| | |||||||||||||||| | |||||||| |
|
|
| T |
31322153 |
gagtacacattaccataatttagcaatcttttattttgtcaccgtgagtttg |
31322102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 31321979 - 31321929
Alignment:
| Q |
288 |
aatcagcaatcttatggttcttgcccttttcgaagaaaatctacaatccta |
338 |
Q |
| |
|
||||| ||||||| || ||||||||| |||||||||||||||||||||||| |
|
|
| T |
31321979 |
aatcaacaatcttttgattcttgcccctttcgaagaaaatctacaatccta |
31321929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University