View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_high_3 (Length: 511)
Name: NF5972_high_3
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 13 - 491
Target Start/End: Original strand, 7487459 - 7487937
Alignment:
| Q |
13 |
aaaatatatcctagtttggtgtcctagctatctagattgacaagggagctatgcttggcacatactcatgaaatttagtataatcaacatcaatttgaaa |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7487459 |
aaaatatatcctagtttggtgtcctagctatctagattgacaagggagctatgcttggcacatactcatgaaatttagtataatcaacatcaatttgaaa |
7487558 |
T |
|
| Q |
113 |
ttggtaaagtgatttgccttgatagtcatacgatgtgagcggttctccaacctttcctccaaggatttgatcgccattcttccaaaggccacacatacga |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7487559 |
ttggtaaagtgatttgccttgatagtcatacgatgtgagtggttctccaacctttcctccaaggatttgatcgccattcttccaaaggccacacatacga |
7487658 |
T |
|
| Q |
213 |
aacattgtcacaagtgggccaatgttgcaccttttgtgccatccactttgatccatcacccaaatgctcaagacaacgggagcattgaagttacaatgca |
312 |
Q |
| |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7487659 |
aacattgacacaagtgggccaatgttgcactttttgtgccatccactttgatccatcacccaaatgctcaagacaacgggagcattgaagttacaatgca |
7487758 |
T |
|
| Q |
313 |
caacataagcaagggaacctttgatctcggcaacaccatcccatgcaaagttgcgatagtcacatgagaaggttggccctctgagttggtgaaactggtt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7487759 |
caacataagcaagggaacctttgatctcggcaacaccatcccatgcaaagttgcgatagtcacatgagaaggttggccctctgagttggtgaaactggtt |
7487858 |
T |
|
| Q |
413 |
gtcgcggaagtcaaagcatagaatatttgcaacaaaatggcgattgccgtatgaactgcttataatccaatgataaacg |
491 |
Q |
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| T |
7487859 |
gtcgcggaagtcaaagcatagaatatttgcaacaaaatggcgattgccgtatgaactgcttataatccaatgataaacg |
7487937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 20 - 432
Target Start/End: Complemental strand, 7873887 - 7873472
Alignment:
| Q |
20 |
atcctagtttggtgtcctagctatctagattgacaagggagctatgcttggcacatactcatgaaatttagtataatcaacatcaatttgaaattggtaa |
119 |
Q |
| |
|
||||||||||||||||||| |||||| | |||||||||| |||||||||||||||||||| | | ||||||| | || || |||||||||||||||| || |
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|
| T |
7873887 |
atcctagtttggtgtcctacctatcttggttgacaagggggctatgcttggcacatactcttaatatttagtcttatgaaaatcaatttgaaattggcaa |
7873788 |
T |
|
| Q |
120 |
agtgatttgccttgatagtcatacgatgtgagcggttctccaacctttcctccaaggatttgatcgccattcttccaaaggccacacatacgaaacattg |
219 |
Q |
| |
|
||||| |||||||||| |||||| ||| ||||||||||||||| |||||||||||||| || ||||||||||||||||||||| ||||||| |||||| |
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|
| T |
7873787 |
agtgagttgccttgatggtcatatgatttgagcggttctccaaactttcctccaaggagttcatcgccattcttccaaaggccgagcatacgagacattg |
7873688 |
T |
|
| Q |
220 |
tcacaagtgggcc---aatgttgcaccttttgtgccatccactttgatccatcacccaaatgctcaagacaacgggagcattgaagttacaatgcacaac |
316 |
Q |
| |
|
|||| ||||||| ||||||| || ||||||||||||||||||||||||| ||||||||| || | || || |||| || ||||| | |||||||| |
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| T |
7873687 |
acacaggtgggccaataatgttgtactttttgtgccatccactttgatccattacccaaatgttcgaaacgacaggagaatcgaagtgatgctgcacaac |
7873588 |
T |
|
| Q |
317 |
ataagcaagggaacctttgatctcggcaacaccatcccatgcaaagttgcgatagtcacatgagaaggttggccctctgagttggtgaaactggttgtcg |
416 |
Q |
| |
|
||||||||||||||| || |||||||||||| |||| | | ||| ||||| | ||| ||||||||||||||||||||||| |||||||||||||| | |
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| T |
7873587 |
ataagcaagggaacccttaatctcggcaacatcatcgcgtagaaatttgcggtcttcaactgagaaggttggccctctgagttcgtgaaactggttgttg |
7873488 |
T |
|
| Q |
417 |
cggaagtcaaagcata |
432 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
7873487 |
cgaaagtcaaagcata |
7873472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 13 - 356
Target Start/End: Original strand, 7494925 - 7495277
Alignment:
| Q |
13 |
aaaatatatcctagtttggtgtcctagctatctagattgacaagggagctatgcttggcacatactcatgaaa---------tttagtataatcaacatc |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||| || ||||| ||||||||| |
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|
| T |
7494925 |
aaaatatatcctagtttggtgtcctagctatcttggtagacaaaggagctatgcttggcacatactcatgaatccaaaaatgttcagtatcatcaacatc |
7495024 |
T |
|
| Q |
104 |
aatttgaaattggtaaagtgatttgccttgatagtcatacgatgtgagcggttctccaacctttcctccaaggatttgatcgccattcttccaaaggcca |
203 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| |||||| ||||||||||||| ||||| |||||||||||||| ||||| || |||||||||||||||| |
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| T |
7495025 |
aatttgaaattggcaaagtgagttgccttgatggtcatatgatgtgagcggttttccaaactttcctccaaggagttgattgctattcttccaaaggcca |
7495124 |
T |
|
| Q |
204 |
cacatacgaaacattgtcacaagtgggccaatgttgcaccttttgtgccatccactttgatccatcacccaaatgctcaagacaacgggagcattgaagt |
303 |
Q |
| |
|
|||| |||||||||| | || |||||||||||| || |||| |||||||||||||||||| ||||||||| |||||| || |||||||||| || |
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|
| T |
7495125 |
aacatgcgaaacattgaaaaaactgggccaatgttatacatttttctccatccactttgatccattacccaaatgtgcaagacgacaggagcattgacgt |
7495224 |
T |
|
| Q |
304 |
tacaatgcacaacataagcaagggaacctttgatctcggcaacaccatcccat |
356 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
7495225 |
gattctgcacaacataagcaagggaacccttgatctcggcaacattatcccat |
7495277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 91 - 446
Target Start/End: Original strand, 7474663 - 7475010
Alignment:
| Q |
91 |
tataatcaacatcaatttgaaattggtaaagtgatttgccttgatagtcatacgatgtgagcggttctccaacctttcctccaaggatttgatcgccatt |
190 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||| || |||||| |||| ||| | | |||| ||||||||||||||| |||||| ||||| |
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|
| T |
7474663 |
tataatcaacatcaatttgaaattggcaaagtgagttgccttcatggtcatatgatgcgagggactttccatcctttcctccaaggagttgatcaccatt |
7474762 |
T |
|
| Q |
191 |
cttccaaaggccacacatacgaaacattgtcacaagtgggccaatgttgcaccttttgtgccatccactttgatccatcacccaaatgctcaagacaacg |
290 |
Q |
| |
|
||||||||| || | |||||||||||||| ||||| || || ||||||| || |||| | ||||||||| |||||||| |||||||| || ||| |
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|
| T |
7474763 |
cttccaaagaccgcccatacgaaacattggcacaattgagctaatgttgtactttttctcccatccactatgatccattacccaaattttc------acg |
7474856 |
T |
|
| Q |
291 |
ggagcattgaagttacaatgcacaacataagcaagggaacctttgatctcggcaacaccatcccatgcaaagttgcgatagtcacatgagaaggttggcc |
390 |
Q |
| |
|
| || | || | ||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||| || | | | ||||||||||| || |
|
|
| T |
7474857 |
caatcagtaaaatgacaatgcacaacataagaaagggagcctttgatctcggcaacgtcatcccatagaaagcatcggtctttaactgagaaggttgccc |
7474956 |
T |
|
| Q |
391 |
ctctgagttggtgaaactggttgtcgcggaagtcaaagcatagaatatttgcaaca |
446 |
Q |
| |
|
||| ||||||||||| || |||| || |||| ||||||||| |||||||||||| |
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|
| T |
7474957 |
ctc--agttggtgaaattgattgtttcgaaagttaaagcataggatatttgcaaca |
7475010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 6944518 - 6944389
Alignment:
| Q |
85 |
atttagtataatcaacatcaatttgaaattggtaaagtgatttgccttgatagtcatacgatgtgagcggttctccaacctttcctccaaggatttgatc |
184 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||| |||||||||| |||||| ||| ||||| |||||||| || |||||||||||| |||||| |
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|
| T |
6944518 |
atttagcataatcaacatcaatttgaaattggcaaagtgagttgccttgatggtcatatgatctgagcagttctccagcccttcctccaaggagttgatc |
6944419 |
T |
|
| Q |
185 |
gccattcttccaaaggccacacatacgaaa |
214 |
Q |
| |
|
|| ||||||||||| || ||||| ||||| |
|
|
| T |
6944418 |
cccgttcttccaaagaccgcacattcgaaa |
6944389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 7497122 - 7497068
Alignment:
| Q |
16 |
atatatcctagtttggtgtcctagctatctagattgacaagggagctatgcttgg |
70 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
7497122 |
atatatcctagtgtggtgtcctagctagctagattgacaagggagctatgtttgg |
7497068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 7483599 - 7483633
Alignment:
| Q |
49 |
ttgacaagggagctatgcttggcacatactcatga |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
7483599 |
ttgacaagggagctatgcttggcacatactcatga |
7483633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 446
Target Start/End: Complemental strand, 6944225 - 6944160
Alignment:
| Q |
381 |
aaggttggccctctgagttggtgaaactggttgtcgcggaagtcaaagcatagaatatttgcaaca |
446 |
Q |
| |
|
|||||||||||||||||||||||||| || | || ||| |||| |||||||| |||||||||||| |
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|
| T |
6944225 |
aaggttggccctctgagttggtgaaattgatcgttgcgaaagttaaagcataagatatttgcaaca |
6944160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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