View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_high_36 (Length: 239)
Name: NF5972_high_36
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_high_36 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 711575 - 711813
Alignment:
| Q |
1 |
ttttaagaaatggtgcgtccctactaacatatctgnnnnnnnnnctttctaaagaaataaagagactctgatttcaacaacaataaaatgaggattctct |
100 |
Q |
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| T |
711575 |
ttttaagaaatgatgcgtctctactaacatatctgtttttttttctttctaaagaaataaagagactctgatttcaacaacaataaaatgaggattctct |
711674 |
T |
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| Q |
101 |
aattactcatccaaagagatctaataatcttgtatacatgatatcacaatatcggatagaacttaggtgatatagcatttgatggcatcggtcaatcaca |
200 |
Q |
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| T |
711675 |
aattactcatccaaagagatctaataatcttgtatacatgatatcacaatatcggatagaacttaggtgatatagcatttgatggcatcggtcaatcaca |
711774 |
T |
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| Q |
201 |
atgtcacaagtgactttcttctcttttctacaagatatt |
239 |
Q |
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| T |
711775 |
atgtcacaagtgactttcttctcttttctacaagatatt |
711813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 738836 - 738598
Alignment:
| Q |
1 |
ttttaagaaatggtgcgtccctactaacatatctgnnnnnnnnn-ctttctaaagaaataaagagactctgatttcaacaacaataaaatgaggattctc |
99 |
Q |
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| T |
738836 |
ttttaagaaatggtgcgtccctactaacatatctgttttttttttctttctaaagaaataaagagactctgatttcaacaacaataaaatgaggattctc |
738737 |
T |
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| Q |
100 |
taattactcatccaaagagatctaataatcttgtatacatgatatcacaatatcggatagaacttaggtgatatagcatttgatggcatcggtcaatcac |
199 |
Q |
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| T |
738736 |
taattactcatccaaagagatctaataatcttgtatacatgatatcacaat-tcggatagaacttaggtgatatagcatttgatggcatcggtcaatcac |
738638 |
T |
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| Q |
200 |
aatgtcacaagtgactttcttctcttttctacaagatatt |
239 |
Q |
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| T |
738637 |
aatgtcacaagtgactttcttctcttttctacaagatatt |
738598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 746950 - 747191
Alignment:
| Q |
1 |
ttttaagaaatggtgcgtccctactaacatatctgnnnnnnnnn---ctttctaaagaaataaagagactctgatttcaacaacaataaaatgaggattc |
97 |
Q |
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| T |
746950 |
ttttaagaaatggtgcgtctctactaacatatctgttttttttttttctttctaaagaaataaagagactctgatttcaacaacaataaaatgaggattc |
747049 |
T |
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| Q |
98 |
tctaattactcatccaaagagatctaataatcttgtatacatgatatcacaatatcggatagaacttaggtgatatagcatttgatggcatcggtcaatc |
197 |
Q |
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| T |
747050 |
tctaattactcatccaaagagatctaataatcttgtatacatgatatcacaatatcggatagaacttaggtgatatagcatttgatggcatcggtcaatc |
747149 |
T |
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| Q |
198 |
acaatgtcacaagtgactttcttctcttttctacaagatatt |
239 |
Q |
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| T |
747150 |
acaatgtcacaagtgactttcttctcttttctacaagatatt |
747191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 43417640 - 43417607
Alignment:
| Q |
190 |
ggtcaatcacaatgtcacaagtgactttcttctc |
223 |
Q |
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| T |
43417640 |
ggtcaatcacaatgtcacaaatgactttcttctc |
43417607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 1879154 - 1879230
Alignment:
| Q |
148 |
aatatcggatagaacttaggtgatatagcatttgatggcatcggtcaatcacaatgtcacaagtgactttcttctct |
224 |
Q |
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| T |
1879154 |
aatattggatagtacttaagtgacataacataaggtgacattggtcaaccacaatgtcataagtgactttcttctct |
1879230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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