View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_high_41 (Length: 231)
Name: NF5972_high_41
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_high_41 |
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Alignment Details
Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 67 - 212
Target Start/End: Complemental strand, 3190528 - 3190384
Alignment:
| Q |
67 |
tcctctcaactaccagaactttatatttccaatttcaagtacagagatgcaccccacttagaatactcagccaaattttcataacttacaaattggaaat |
166 |
Q |
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| T |
3190528 |
tcctctcaactaccagcactttatatttccaatttccagtacagagatgcaccccacgtagaatactcagccaaattttcttaactcacaaatcggaaat |
3190429 |
T |
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| Q |
167 |
catttccctgtcaacaatttgaaactacaagttaccgtcttctcaa |
212 |
Q |
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| T |
3190428 |
catttccccgtcaacaa-ttgaaactacaagctaccgttttctcaa |
3190384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 3190632 - 3190558
Alignment:
| Q |
1 |
tagacttggtctagggttaaatcttgtaactcctctgcgtatttacttggtcaaacaactccccactcctctcaa |
75 |
Q |
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| T |
3190632 |
tagacttggtctagggttaaatcttgtaactcctctgcgtatgtacttggtcaaacaacttcccattcctctcaa |
3190558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 197
Target Start/End: Complemental strand, 17852319 - 17852193
Alignment:
| Q |
70 |
tctcaactaccagaactttatatttccaatttcaagtacagagatgcaccccacttagaatactcagccaaattttcataacttacaaattggaaatcat |
169 |
Q |
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|||||||||||| |||| |||||||||||||| |||||||| || |||| ||| || ||||||||||||||||||| | || ||||| | |||| ||| |
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| T |
17852319 |
tctcaactaccaccacttcatatttccaatttccagtacagaaatacacctcacctacaatactcagccaaattttctaatctcacaaaattgaaaacat |
17852220 |
T |
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| Q |
170 |
ttccctgtcaacaatttgaaactacaag |
197 |
Q |
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| T |
17852219 |
ttacctgccaa-aaattgaaactacaag |
17852193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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