View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_high_6 (Length: 465)
Name: NF5972_high_6
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 79 - 448
Target Start/End: Complemental strand, 37005409 - 37005041
Alignment:
| Q |
79 |
atactgtcatcttccaatttgttcctcatcttttcactaaccattaataatttcatcttcaacttgtcttgcttccatcgttaattcataattatttatt |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
37005409 |
atactgtcatcttccaatttgttcctcatcttttcactaaccattaataatttcatcttcaacttgtcttgtttccatcattaattcataattatttatt |
37005310 |
T |
|
| Q |
179 |
tttacttccttgcaatagnnnnnnncttcaagatgacctatcaatttagtaatttttgtgttcatctattttgttttta-aaatgttacaataatgtgac |
277 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
37005309 |
tttacttccttgcaatagtttttttcttcaagatgacctatcaatttagtaattt--gtgttcatctattttttttttttaaatgttacaataatgtgac |
37005212 |
T |
|
| Q |
278 |
tcttagggatataaataatttttagaattgtcttttcagaaaaatattaccttgttgaggctggttatcctatctttatgggatacatgggtccctacaa |
377 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37005211 |
acttagggatataaataatttttagaattgtctttgtagaaaaatattaccttgttgatgctggttatcctatctttatgggatacatgggtccctacaa |
37005112 |
T |
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| Q |
378 |
aaccaccggatatcatctccctcatttcggattggagcctagagctagagatagaaatgaagtgtttaatt |
448 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37005111 |
aaccaccaggtatcatctccctcatttcggattggagcctagagctagagggagaaatgaagtgtttaatt |
37005041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 79 - 444
Target Start/End: Original strand, 43406533 - 43406896
Alignment:
| Q |
79 |
atactgtcatcttccaatttgttcctcatcttttcactaaccattaataatttcatcttcaacttgtcttgcttccatcgttaattcataattatttatt |
178 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43406533 |
atactgacatcttccaatttgttcctcatcttttcactaaccattaataatttcatcttcaacttgtcttgcttccatcattaattcataattatttatt |
43406632 |
T |
|
| Q |
179 |
tttacttccttgcaatagnnnnnnncttcaagatgacctatcaatttagtaatttttgtgttcatctattttgtttttaaaatgttacaataatgtgact |
278 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43406633 |
tttacttccttgcaatagtttttttcttcaagatgacctatcaatttagtaatttttgtgttcatctatttt--ttttaaaatgttacaataatgtgact |
43406730 |
T |
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| Q |
279 |
cttagggatataaataatttttagaattgtcttttcagaaaaatattaccttgttgaggctggttatcctatctttatgggatacatgggtccctacaaa |
378 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
43406731 |
cttagggatataaataatttttagaattgtctttgtagaaaaatattaccttgttgatgctggttattctatctttatgggatacacgggtccctacaaa |
43406830 |
T |
|
| Q |
379 |
accaccggatatcatctccctcatttcggattggagcctagagctagagatagaaatgaagtgttt |
444 |
Q |
| |
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||||| | |||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| |
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| T |
43406831 |
accactaggtatcatctccctcatttcagattggggcctagagctagagggagaaatgaagtgttt |
43406896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 83 - 444
Target Start/End: Original strand, 49128663 - 49129022
Alignment:
| Q |
83 |
tgtcatcttccaatttgttcctcatcttttcactaaccattaataatttcatcttcaacttgtcttgcttccatcgttaattcataattatttattttta |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49128663 |
tgtcatcttccaatttgttcctcatcttttcactaaccattaataatttcatcttcaacttgtcttgcttccatcattaattcataattatttattttta |
49128762 |
T |
|
| Q |
183 |
cttccttgcaatagnnnnnnncttcaagatgacctatcaatttagtaatttttgtgttcatctattttgtttttaaaatgttacaataatgtgactctta |
282 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
49128763 |
cttccttgcaatagtttttttcttcaagatgacctatcaatttagtaatttttgttttcatctattttttttt--aaatgttacaataatgtgactctta |
49128860 |
T |
|
| Q |
283 |
gggatataaataatttttagaattgtcttttcagaaaaatattaccttgttgaggctggttatcctatctttatgggatacatgggtccctacaaaacca |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
49128861 |
gggatataaataatttttagaattgtctttgtagaaaaatattaccttgttgatgctggttattctatctttatgggatacacgggtccctacaaaacca |
49128960 |
T |
|
| Q |
383 |
ccggatatcatctccctcatttcggattggagcctagagctagagatagaaatgaagtgttt |
444 |
Q |
| |
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| | |||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| |
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| T |
49128961 |
ctaggtatcatctccctcatttcagattggggcctagagctagagggagaaatgaagtgttt |
49129022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 79 - 255
Target Start/End: Original strand, 34885063 - 34885239
Alignment:
| Q |
79 |
atactgtcatcttccaatttgttcctcatcttttcactaaccattaataatttcatcttcaacttgtcttgcttccatcgttaattcataattatttatt |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34885063 |
atactgtcatcttccaatttgttcctcatcttttcactaaccattaataatttcatcttcaacttgtcttgcttccatctttaattcataattatttatt |
34885162 |
T |
|
| Q |
179 |
tttacttccttgcaatagnnnnnnncttcaagatgacctatcaatttagtaatttttgtgttcatctattttgtttt |
255 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
34885163 |
tttacttccttgcaatagtttttttcttcaagatgacctatcaatttagtaatttttgtgttcatcttttttttttt |
34885239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 258 - 448
Target Start/End: Original strand, 34886129 - 34886318
Alignment:
| Q |
258 |
aaatgttacaataatgtgactcttagggatataaataatttttagaattgtcttttcagaaaaatattaccttgttgaggctggttatcctatctttatg |
357 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||| |||||| | |||||||| || ||||||||| |||||||| | ||||||||||||||||||| |
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| T |
34886129 |
aaatgttacaataacgtgactcttcgggatataaatattttttata-ttgtctttacaagaaaatattatcttgttgatgttggttatcctatctttatg |
34886227 |
T |
|
| Q |
358 |
ggatacatgggtccctacaaaaccaccggatatcatctccctcatttcggattggagcctagagctagagatagaaatgaagtgtttaatt |
448 |
Q |
| |
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|| ||||||||||||||||||||||| | |||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||| |
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| T |
34886228 |
ggctacatgggtccctacaaaaccactaggtatcatctccctcatttcagattggggcctagagctagaggaagaaatgaagtgtttaatt |
34886318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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