View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_high_9 (Length: 429)
Name: NF5972_high_9
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 123 - 420
Target Start/End: Complemental strand, 36905122 - 36904825
Alignment:
| Q |
123 |
gatcacgatgcaatacttcctnnnnnnntataatcttgttttttattctgaagtttaactctataaatacgtataaaccaacaaacaaagtaaaactctc |
222 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36905122 |
gatcacgatgcaatacttcctaaaaaaatataatcttgttttttattctgaagtttaactctataaatacgtataaaccaacaaacaaagtaaaactctc |
36905023 |
T |
|
| Q |
223 |
caaagctaaacctaatttgtttgttttttcatataactctccaaagggaaaagaataaccgatcactcatcatggattctgatatttcgttcacaataag |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36905022 |
caaagctaaacctaatttgtttgttttttcatataactctccaaagggaaaagaataaccgatcactcatcatggattctgatatttcgttcataataag |
36904923 |
T |
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| Q |
323 |
tccaatcgaagatccaacctttacaatcccaaaagatgatccttttaggaaagacttttacattaatttccattacatccaagttaattttcctttgc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36904922 |
tccaatcgaagatccaacctttacaatcccaaaagatgatccttttaggaaagacttttacattaatttccattacatccaagttaattttcctttgc |
36904825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 123 - 420
Target Start/End: Original strand, 37072667 - 37072950
Alignment:
| Q |
123 |
gatcacgatgcaatacttcctnnnnnnnt-ataatcttgtttttt-attctgaagtttaactctataaatacgtataaaccaacaaacaaagtaaaactc |
220 |
Q |
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||||||||||||||||||||| | ||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
37072667 |
gatcacgatgcaatacttccttaaaaaatgataatcttgtttttttattctgaagtttagctctataaatacgtataagccaacaaacaaagtaaaactc |
37072766 |
T |
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| Q |
221 |
tccaaagctaaacctaatttgtttgttttttcatataactctccaaagggaaaagaataaccgatcactcatcatggattctgatatttcgttcacaata |
320 |
Q |
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|||||||||||| |||||||||||||||| |||| || ||||||| ||| ||||||| ||| | || || ||||| |||| |
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| T |
37072767 |
tccaaagctaaagctaatttgtttgttttcccatacaaaattccaaagctaaa----------------catcatgaattgtaatgttaggttcagaata |
37072850 |
T |
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| Q |
321 |
agtccaatcgaagatccaacctttacaatcccaaaagatgatccttttaggaaagacttttacattaatttccattacatccaagttaattttcctttgc |
420 |
Q |
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||| |||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37072851 |
agttcaatcgaagaaccaacctttacaatctcaaaagatgatccttttagtaaagacttttacattaatttccattacatccaagttaattttcccttgc |
37072950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 317 - 420
Target Start/End: Complemental strand, 37493948 - 37493845
Alignment:
| Q |
317 |
aataagtccaatcgaagatccaacctttacaatcccaaaagatgatccttttaggaaagacttttacattaatttccattacatccaagttaattttcct |
416 |
Q |
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||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| ||||| |
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| T |
37493948 |
aataagtccaaccgaagaaccaacatttacaatcccaaaagatgatccttttagtaatcacttttacattaatttccattacatccaatttaactttccc |
37493849 |
T |
|
| Q |
417 |
ttgc |
420 |
Q |
| |
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|||| |
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| T |
37493848 |
ttgc |
37493845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 36905228 - 36905175
Alignment:
| Q |
17 |
aataccgcggattactgtacgctagtttgttaataacattggattttcagtttt |
70 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36905228 |
aataccgcggattactgtacgctagtttgttaataacattggattttcagtttt |
36905175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 325 - 420
Target Start/End: Original strand, 37076610 - 37076705
Alignment:
| Q |
325 |
caatcgaagatccaacctttacaatcccaaaagatgatccttttaggaaagacttttacattaatttccattacatccaagttaattttcctttgc |
420 |
Q |
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|||||||| | |||||| |||||||||||||||||||||||||||| || ||||||||||||| ||| ||||||| ||||||| |||||| |||| |
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| T |
37076610 |
caatcgaaaaaccaaccattacaatcccaaaagatgatccttttagcaactacttttacattaagttctattacattcaagttagttttcccttgc |
37076705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 202 - 418
Target Start/End: Complemental strand, 41372116 - 41371900
Alignment:
| Q |
202 |
aacaaacaaagtaaaactctccaaagctaaacctaatttgtttgttttttcatataactctccaaagggaaaagaataaccgatcactcatcatggattc |
301 |
Q |
| |
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|||||||||| || |||||||||||| ||||||||||| |||| |||| |||||| |||||||||| ||||| |||| |||||| || ||||| || |
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| T |
41372116 |
aacaaacaaaatataactctccaaagttaaacctaattagtttcttttctcatatcactctccaaactgaaaaaaatacccgatccatcgtcatgcttta |
41372017 |
T |
|
| Q |
302 |
tgatatttcgttcacaataagtccaatcgaagatccaacctttacaatcccaaaagatgatccttttaggaaagacttttacattaatttccattacatc |
401 |
Q |
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| || || | ||||||| ||||||||||| | ||||| | |||||||||||||||||| || |||||||||||||||||||||||| | |
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| T |
41372016 |
taattttaacctagaaataagttcaatcgaagatgatccttttacggtgtcaaaagatgatccttttaataactacttttacattaatttccattacaac |
41371917 |
T |
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| Q |
402 |
caagttaattttccttt |
418 |
Q |
| |
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||||||||||||||||| |
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| T |
41371916 |
caagttaattttccttt |
41371900 |
T |
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