View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_low_10 (Length: 415)
Name: NF5972_low_10
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 37937687 - 37937288
Alignment:
| Q |
1 |
acacaatagttctaacactaaaaacaaacagagtggcagtgacagcatcactatagcagtagtagtagtgaacagtgacactgagtaagcgatagccgag |
100 |
Q |
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| T |
37937687 |
acacaatagttctaacactaaaaacaaacagagtggcagtgacagcatcactatagcagtagtagtagtgaacagtgacactgagtaagcgatagccgag |
37937588 |
T |
|
| Q |
101 |
ccggctgactagccgaatttcacgcttctcacaaaactacacgcgcacttgcacgtgcaatccccactcttaacacgtaaacacagttttacactcactc |
200 |
Q |
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| T |
37937587 |
ccggctgactagccgaatttcacgcttctcacaaaactacacgcgcacttgcacgtgcaatccccactcttaacacgtaaacacagttttacactcactc |
37937488 |
T |
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| Q |
201 |
tcctaatgggactgggaagtggaaactatatttattagtggtttaattaattaataaat----aaatgaaggacaaggacaaaaggatcgtccatataac |
296 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37937487 |
tcctaatgagactgggaagtggaaactatatttattagtggtttaattaattaataaataaataaatgaaggacaaggacaaaaggatcgtccatataac |
37937388 |
T |
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| Q |
297 |
tacccattctcaaaccaaaagtaagtgcaacaactctcacttcctctgcttcatcactcactaacacagaatcaaagagaggggtgtaggaagtaaaaag |
396 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37937387 |
tacccattctcaaaccaaaagtaactgcaacaaccctcacttcctctgcttcatcactcactaacacagaatcaaagagaggggtgtaggaagtaaaaag |
37937288 |
T |
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