View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_low_11 (Length: 414)
Name: NF5972_low_11
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 8e-68; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 17086271 - 17086441
Alignment:
| Q |
13 |
aatatttagctttgagaactctagtgaagaaggaggaagagtttctaagaagctttcatctatgcttacctagcatcgtaagattaaaacc-ttcaagaa |
111 |
Q |
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| T |
17086271 |
aatatttagctttgagaactctagtgaagagggaggaagagttcttgagaagctttcatctatgcttacctagcattgtaagattaaaacctttcaagaa |
17086370 |
T |
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| Q |
112 |
catggaaattaacgtctccatgatccttacaagttgtcatcttatcc-accaattgacaatatgaccacca |
181 |
Q |
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| T |
17086371 |
catggaaattaacatctccatgatccttacaagttgtcatcttatccaaccaattgacaatatgaccacca |
17086441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 274 - 394
Target Start/End: Original strand, 17086561 - 17086684
Alignment:
| Q |
274 |
gagcacttctcgatcaagagctccaattttgaatatttttccatattcgttctagaaaggagttacctacttcttgagaaat---ctacattcaaaattc |
370 |
Q |
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| T |
17086561 |
gagcacttctcgatcaagagctccaattttgaatatttttccatattcgttctagaaaggagttacctacttcttgagaaatctactacattcaaaattc |
17086660 |
T |
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| Q |
371 |
gtttgacttttaataggtatttat |
394 |
Q |
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| T |
17086661 |
gtttgacttttaataggtatttat |
17086684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 2901642 - 2901497
Alignment:
| Q |
13 |
aatatttagctttgagaactctagtgaagaaggaggaagagtttctaagaagctttcatctatgcttacctagcatcgtaagattaaaaccttcaagaac |
112 |
Q |
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| T |
2901642 |
aatatttatctttgagaactctagtgaggagaaaggaagagtttgtgaagagcttccatccttgattaccaagcatggcaaggttaaaaccttcaaggtc |
2901543 |
T |
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| Q |
113 |
atggaaattaacgtctccatgatccttacaagttgtcatcttatcc |
158 |
Q |
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| T |
2901542 |
acaaaaattaacaccaccatgatccttacaagtagtcatcttatcc |
2901497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 52843218 - 52843363
Alignment:
| Q |
13 |
aatatttagctttgagaactctagtgaagaaggaggaagagtttctaagaagctttcatctatgcttacctagcatcgtaagattaaaaccttcaagaac |
112 |
Q |
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| T |
52843218 |
aatatttagctttgagaactttggtgaggagagaggaagagtttgtgaggagcttccatccttatttacctagcatggcaaggttaaaaccttcaaggtc |
52843317 |
T |
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| Q |
113 |
atggaaattaacgtctccatgatccttacaagttgtcatcttatcc |
158 |
Q |
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| T |
52843318 |
acgaaagttgagaccaccgtgatccttacaagtagtcatcttatcc |
52843363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 1362196 - 1362100
Alignment:
| Q |
13 |
aatatttagctttgagaactctagtgaagaaggaggaagagtttctaagaagctttcatctatgcttacctagcatcgtaagattaaaaccttcaag |
109 |
Q |
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| T |
1362196 |
aatatttagctttgagaactttggtgaggagagaggaagagtctatgaggagcttccatccttgcttacctagcatggcaaggttaaaaccttcaag |
1362100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 158
Target Start/End: Complemental strand, 38865076 - 38865010
Alignment:
| Q |
92 |
aagattaaaaccttcaagaacatggaaattaacgtctccatgatccttacaagttgtcatcttatcc |
158 |
Q |
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| T |
38865076 |
aagattataaccttcaagatcacggaacttaagacctccatgatccttacaaggtgtcatattatcc |
38865010 |
T |
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