View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_low_12 (Length: 410)
Name: NF5972_low_12
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Original strand, 37027509 - 37027898
Alignment:
| Q |
17 |
attatttcatatactaatctatctatgtaactttagttt-----gtgtaataatttataaaacatatgtaacttttgttaaatttgcagatgctataaat |
111 |
Q |
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| T |
37027509 |
attatttcatatactaatctatctatgtaacttcagtttaatttgtgtagtaattaataaaacatatgtaacttttgttaaatttgcagatgctataaat |
37027608 |
T |
|
| Q |
112 |
catggaagaggtagtagaagctactccatcaaatcatggaagaaactcaaattttcatcatttggctactcagacttagattcttcatatggtactcctt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37027609 |
catggaagaggtagtagaagctactccatcaaatcatggaagaaactcaaattttcatcatttggctactcagacttagattcttcatatggtactcctt |
37027708 |
T |
|
| Q |
212 |
cttctcaaccacttccacctttcaattcacttgctccacaacctacctctctaccaccttattcacctgttccaaacccacctcatgatgtttttagacc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37027709 |
cttctcaaccacttccacctttcaattcacttgctccacaacctacctctctaccaccttattcacctgttccaaacccacctcatgatgtttttagacc |
37027808 |
T |
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| Q |
312 |
accaccaagtcctaaaaccgttgtcacaatatcgccgccgccacctccaagccaatcaaaacatgttccaagcccacctaaaagtattat |
401 |
Q |
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||||||||||||||||||| |||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
37027809 |
accaccaagtcctaaaaccattgttacaatgtcgccgccgccacctccaagcccatcaaaacatgttccaagcccacctaaaagtgttat |
37027898 |
T |
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