View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5972_low_14 (Length: 402)

Name: NF5972_low_14
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5972_low_14
NF5972_low_14
[»] chr5 (5 HSPs)
chr5 (17-389)||(17386882-17387254)
chr5 (21-81)||(20324038-20324098)
chr5 (27-139)||(9846909-9847021)
chr5 (25-81)||(23957368-23957424)
chr5 (21-81)||(26466792-26466852)
[»] chr7 (3 HSPs)
chr7 (17-389)||(15537151-15537524)
chr7 (21-74)||(16256566-16256619)
chr7 (26-81)||(38847292-38847347)
[»] chr2 (4 HSPs)
chr2 (21-106)||(27036126-27036211)
chr2 (16-109)||(30153714-30153807)
chr2 (23-181)||(20042772-20042930)
chr2 (21-81)||(21809109-21809169)
[»] chr4 (8 HSPs)
chr4 (21-105)||(22643589-22643673)
chr4 (21-96)||(35087440-35087515)
chr4 (21-157)||(13988036-13988172)
chr4 (21-96)||(22176911-22176986)
chr4 (21-81)||(16986785-16986845)
chr4 (16-81)||(5239577-5239642)
chr4 (16-81)||(10652974-10653039)
chr4 (16-81)||(10867119-10867184)
[»] chr3 (5 HSPs)
chr3 (16-199)||(18434132-18434315)
chr3 (21-157)||(31195101-31195237)
chr3 (21-157)||(52773076-52773212)
chr3 (21-96)||(12285536-12285611)
chr3 (21-96)||(19586680-19586755)
[»] chr6 (7 HSPs)
chr6 (23-81)||(6569597-6569655)
chr6 (21-120)||(26133489-26133588)
chr6 (16-81)||(20699241-20699306)
chr6 (26-81)||(34067000-34067055)
chr6 (16-81)||(14815035-14815100)
chr6 (16-81)||(28939020-28939085)
chr6 (90-198)||(25422108-25422216)
[»] scaffold0014 (1 HSPs)
scaffold0014 (21-157)||(95745-95881)
[»] scaffold0329 (1 HSPs)
scaffold0329 (21-96)||(11245-11320)
[»] scaffold0013 (1 HSPs)
scaffold0013 (21-120)||(248899-248998)
[»] chr1 (3 HSPs)
chr1 (21-96)||(52777916-52777991)
chr1 (16-81)||(2359794-2359859)
chr1 (23-87)||(9797110-9797174)
[»] chr8 (1 HSPs)
chr8 (26-139)||(44289915-44290028)
[»] scaffold0037 (1 HSPs)
scaffold0037 (26-139)||(53686-53799)


Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 17386882 - 17387254
Alignment:
Q  17 gaatctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttaccaaaaaatttct 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17386882 gaatctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttaccaaaacatttct 17386981  T
Q  117 ggtcatatgctgtttctcatgctgtgttcattataaatagagtatctagtcctgtacttcaaaattattctccatattttttgttaaaaggcaccttgcc 216  Q
     |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  17386982 agtcatatgctgtttctcatgttgtgttcattataaatagagtacctagtcctgtacttcaaaatcattctccatattttttgttaaaaggcacattgcc 17387081  T
Q  217 taacttgcatactttaaaagtttttggatctttagtttttgctttcactttattgtcacataggactaaacttactcctagagcaagaaaatgtannnnn 316  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||         
T  17387082 tgacttgcatactttaaaagtttttggatctttagtttttgcttccactttattgtcacataggactaaacttactcatagagcaagaaaatgtattttt 17387181  T
Q  317 nnaggctataaagctggagtaaaaggtgctgtactgcttgacattaataacaaagagattttagtgtctagaa 389  Q
      ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17387182 ttaggctataaagctggagtaaaaggtgcagtactgcttgacattaataacaaagagattttagtgtctagaa 17387254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 20324098 - 20324038
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagc 81  Q
    |||| ||||||||||| || || ||||| ||||||||||||||||||||||| || |||||    
T  20324098 ctcctcaacaaaatggtagagttgagaggaaacatcaacatattttgaatgttggtagagc 20324038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 9847021 - 9846909
Alignment:
Q  27 aacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttaccaaaaaatttctggtcatatgc 126  Q
    |||||||||| |||||||||||||| || ||||| ||||| ||||| || ||||| ||| |   ||| ||||| ||||| ||   ||| ||||| |||||    
T  9847021 aacaaaatggtagggtagagagaaagcaccaacacattttaaatgttggcagagctttactttatcagtcaaaattacctaagtgtttttggtcttatgc 9846922  T
Q  127 tgtttctcatgct 139  Q
    ||||| |||||||    
T  9846921 tgtttgtcatgct 9846909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 23957368 - 23957424
Alignment:
Q  25 ccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagc 81  Q
    |||||||||||| || || ||||||||||| |||||| ||||||| ||||| |||||    
T  23957368 ccaacaaaatgggagagttgagagaaaacaccaacatcttttgaacgtaggcagagc 23957424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 26466852 - 26466792
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagc 81  Q
    |||||||||||||||| ||||| || ||||||||||| || ||||| ||||| || |||||    
T  26466852 ctccccaacaaaatgggagggttgaaagaaaacatcagcacattttaaatgttggcagagc 26466792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 15537151 - 15537524
Alignment:
Q  17 gaatctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttaccaaaaaatttct 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |    
T  15537151 gaatctcccaaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttaccaaaacattttt 15537250  T
Q  117 ggtcatatgctgtttctcatgctgtgttcattataaatagagtatctagtcctgtacttcaaaattattctccatattttttgttaaaaggcaccttgcc 216  Q
    ||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  15537251 ggtcatatgatgtttctcatactgtgttcattataaatagagtacctagtcctgtacttcaaaatcattctccatattttttgttaaaaggcacattgcc 15537350  T
Q  217 taacttgcatactttaaaagtttttggatctttagtttttgctttcactttattgtcacataggactaaacttactcctagagcaagaaaatgtannnnn 316  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||         
T  15537351 tgacttgcatactttaaaagtttttggatctttagtttttgcttccactttattgtcacataggattaatcttactcctagagcaagaaaatgtattttt 15537450  T
Q  317 nnaggctataaagctggagt-aaaaggtgctgtactgcttgacattaataacaaagagattttagtgtctagaa 389  Q
      |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  15537451 ttaggctataaagctggagtaaaaaggtgcagtactgtttgacattaataacaaagagattttagtgtctagaa 15537524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 16256566 - 16256619
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtag 74  Q
    |||||||||||||||| || ||||| |||||||||||||| || ||||||||||    
T  16256566 ctccccaacaaaatgggagagtagaaagaaaacatcaacacatcttgaatgtag 16256619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 38847347 - 38847292
Alignment:
Q  26 caacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagc 81  Q
    ||||||||||| || || || |||||||||||||| ||||||||| ||||||||||    
T  38847347 caacaaaatgggagagtggaaagaaaacatcaacacattttgaatataggaagagc 38847292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 27036211 - 27036126
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttacca 106  Q
    ||||||| |||||||| || ||||||||||||||||| |||||| | ||||| || ||||| |||||| |||||||||| ||||||    
T  27036211 ctccccagcaaaatgggagagtagagagaaaacatcagcatattctcaatgttggcagagctttattatttcaatcaaaattacca 27036126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 30153714 - 30153807
Alignment:
Q  16 agaatctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttaccaaaa 109  Q
    ||||||||| |||||||||||||| ||||| |||||||||||||||||  | |||||||  || || || ||  |||| |||||||||||||||    
T  30153714 agaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagccagggctttgttgtttcattcaaatttaccaaaa 30153807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 20042930 - 20042772
Alignment:
Q  23 ccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttaccaaaaaatttctggtcat 122  Q
    |||||||||||||| ||||| || ||||||||||| |||||||||||||| |  |||||| |  |  | |||||||| ||||| ||| | || |||   |    
T  20042930 ccccaacaaaatgggagggtggaaagaaaacatcagcatattttgaatgttgctagagcacttcttttccaatcaaaattacctaaacaattttggagtt 20042831  T
Q  123 atgctgtttctcatgctgtgttcattataaatagagtatctagtcctgtacttcaaaat 181  Q
    |||| |||||||||||||| |   |||| |||||| |  |||||||| |||||||||||    
T  20042830 atgcagtttctcatgctgtttatcttatcaatagaattcctagtcctctacttcaaaat 20042772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 21809169 - 21809109
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagc 81  Q
    |||||||||| ||||| || || |||||||| || ||| |||||||||||||||| |||||    
T  21809169 ctccccaacagaatgggagagttgagagaaagcaccaatatattttgaatgtaggcagagc 21809109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 22643589 - 22643673
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttacc 105  Q
    |||||||||||||||| ||||| || ||||| |||||||||||||||||||| |  ||||| || ||| |||||||||| |||||    
T  22643589 ctccccaacaaaatgggagggttgaaagaaagcatcaacatattttgaatgttgttagagccttgttatttcaatcaaaattacc 22643673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 35087440 - 35087515
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatc 96  Q
    ||||||| |||||||| || |||||||||||||||||||||||| | ||||| || ||||| |||||| |||||||    
T  35087440 ctccccagcaaaatgggagagtagagagaaaacatcaacatattctcaatgttggcagagctttattatttcaatc 35087515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 13988036 - 13988172
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttaccaaaaaatttctggtc 120  Q
    |||||||||||||||| || ||||| |||||||||||||| || ||||||||||  ||||| ||| |  | |||||||| ||||| ||| | ||||||||    
T  13988036 ctccccaacaaaatgggagagtagaaagaaaacatcaacacatcttgaatgtagctagagctttacttttccaatcaaaattacctaaacagttctggtc 13988135  T
Q  121 atatgctgtttctcatgctgtgttcattataaataga 157  Q
     ||| | ||||  ||||| || | ||| |||||||||    
T  13988136 ttattcagttttgcatgcagtttacataataaataga 13988172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 22176986 - 22176911
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatc 96  Q
    |||||||||||||||| || ||||| || ||||| ||||||||| | |||||||| ||||| |||||| |||||||    
T  22176986 ctccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatc 22176911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 16986785 - 16986845
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagc 81  Q
    |||||||||| ||||| || || |||||||| || |||||||||||||||||||| |||||    
T  16986785 ctccccaacagaatgggagagttgagagaaagcaccaacatattttgaatgtaggcagagc 16986845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 5239577 - 5239642
Alignment:
Q  16 agaatctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagc 81  Q
    |||| |||||||||||||||| || || || |||||||||||||| ||||| ||||| || |||||    
T  5239577 agaaactccccaacaaaatggtagagttgaaagaaaacatcaacacattttaaatgttggtagagc 5239642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 10652974 - 10653039
Alignment:
Q  16 agaatctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagc 81  Q
    |||| |||||||||||||||| || || || |||||||||||||| ||||| ||||| || |||||    
T  10652974 agaaactccccaacaaaatggtagagttgaaagaaaacatcaacacattttaaatgttggtagagc 10653039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 10867119 - 10867184
Alignment:
Q  16 agaatctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagc 81  Q
    |||| |||||||||||||||| || || || |||||||||||||| ||||| ||||| || |||||    
T  10867119 agaaactccccaacaaaatggtagagttgaaagaaaacatcaacacattttaaatgttggtagagc 10867184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 18434315 - 18434132
Alignment:
Q  16 agaatctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttaccaaaaaatttc 115  Q
    ||||||||| |||||||||||||| ||||| |||||||||||||||||  | |||||||  || |  || ||  |||| ||||||||||||||| | ||     
T  18434315 agaatctccacaacaaaatggaagagtagaaagaaaacatcaacatatactaaatgtagccagggatttgttgtttcattcaaatttaccaaaacaattt 18434216  T
Q  116 tggtcatatgctgtttctcatgctgtgttcattataaatagagtatctagtcctgtacttcaaaattattctccatattttttg 199  Q
    ||||  |||||||| || |||||||| || || |||||  | || ||||||||| | ||| | ||| | || ||||||||||||    
T  18434215 tggtgttatgctgtgtcacatgctgtttttatcataaaccgtgtctctagtcctcttcttgataataaatcaccatattttttg 18434132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 31195237 - 31195101
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttaccaaaaaatttctggtc 120  Q
    |||||||||||||||| || ||||| |||||||||||||| || ||||||||||  ||||| ||| |  | |||||||| ||||| ||| | ||||||||    
T  31195237 ctccccaacaaaatgggagagtagaaagaaaacatcaacacatcttgaatgtagctagagctttacttttccaatcaaaattacctaaacagttctggtc 31195138  T
Q  121 atatgctgtttctcatgctgtgttcattataaataga 157  Q
     ||| | ||||  ||||| || | ||| |||||||||    
T  31195137 ttattcagttttgcatgcagtttacataataaataga 31195101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 52773076 - 52773212
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttaccaaaaaatttctggtc 120  Q
    |||||||||||||||| || ||||| |||||||||||||| || ||||||||||  ||||| ||| |  | |||||||| ||||| ||| | ||||||||    
T  52773076 ctccccaacaaaatgggagagtagaaagaaaacatcaacacatcttgaatgtagctagagctttacttttccaatcaaaattacctaaacagttctggtc 52773175  T
Q  121 atatgctgtttctcatgctgtgttcattataaataga 157  Q
     ||| | ||||  ||||| || | ||| |||||||||    
T  52773176 ttattcagttttgcatgcagtttacataataaataga 52773212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 12285536 - 12285611
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatc 96  Q
    |||||||||||||||| || ||||| || ||||| ||||||||| | |||||||| ||||| |||||| |||||||    
T  12285536 ctccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatc 12285611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 19586755 - 19586680
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatc 96  Q
    |||||||||||||||| || ||||| || ||||| ||||| ||| | |||||||| ||||| |||||| |||||||    
T  19586755 ctccccaacaaaatggtagagtagaaaggaaacaccaacacattctcaatgtaggtagagctttattatttcaatc 19586680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 6569655 - 6569597
Alignment:
Q  23 ccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagc 81  Q
    |||||||||||||| || |||||||||||||||||| ||||| | ||||||||||||||    
T  6569655 ccccaacaaaatgggagagtagagagaaaacatcaatatattctcaatgtaggaagagc 6569597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 26133489 - 26133588
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttaccaaaaaatttctggtc 120  Q
    |||||||||||||||| || ||||| |||||||||||||| || ||||||||||  ||||| ||| |  | |||||||| ||||| ||| | ||||||||    
T  26133489 ctccccaacaaaatgggagagtagaaagaaaacatcaacacatcttgaatgtagctagagctttacttttccaatcaaaattacctaaacagttctggtc 26133588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 20699306 - 20699241
Alignment:
Q  16 agaatctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagc 81  Q
    |||| |||||||||||||| |  | ||||| |||||||| ||||||||||||||||| ||||||||    
T  20699306 agaaactccccaacaaaattgttgagtagaaagaaaacaccaacatattttgaatgttggaagagc 20699241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 34067000 - 34067055
Alignment:
Q  26 caacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagc 81  Q
    ||||||||||| ||||| ||||||||||| ||||||||| | ||| ||||||||||    
T  34067000 caacaaaatggtagggttgagagaaaacaccaacatattcttaatataggaagagc 34067055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 14815035 - 14815100
Alignment:
Q  16 agaatctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagc 81  Q
    |||| |||||||||||||||| || || || |||||||||||||| ||||| ||||| || |||||    
T  14815035 agaaactccccaacaaaatggtagagttgaaagaaaacatcaacacattttaaatgttggtagagc 14815100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 28939085 - 28939020
Alignment:
Q  16 agaatctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagc 81  Q
    |||| ||||||| |||||||| || ||||| |||||| | | ||||||||||||||| ||||||||    
T  28939085 agaaactccccagcaaaatggtagagtagaaagaaaataccgacatattttgaatgttggaagagc 28939020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 198
Target Start/End: Complemental strand, 25422216 - 25422108
Alignment:
Q  90 ttcaatcaaatttaccaaaaaatttctggtcatatgctgtttctcatgctgtgttcattataaatagagtatctagtcctgtacttcaaaattattctcc 189  Q
    |||||||| ||||||| |||| ||| ||||| |||| ||||  |||||| || ||||| || ||||||||  ||| ||||||  | |||||| | |||||    
T  25422216 ttcaatcacatttacctaaaagtttttggtcttatgatgttgttcatgcagtattcatcatgaatagagtgcctactcctgttttacaaaatcaatctcc 25422117  T
Q  190 atatttttt 198  Q
    |||||||||    
T  25422116 atatttttt 25422108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 95881 - 95745
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttaccaaaaaatttctggtc 120  Q
    |||||||||||||||| || ||||| |||||||||||||| || ||||||||||  ||||| ||| |  | |||||||| ||||| ||| | ||||||||    
T  95881 ctccccaacaaaatgggagagtagaaagaaaacatcaacacatcttgaatgtagctagagctttacttttccaatcaaaattacctaaacagttctggtc 95782  T
Q  121 atatgctgtttctcatgctgtgttcattataaataga 157  Q
     ||| | ||||  ||||| || | ||| |||||||||    
T  95781 ttattcagttttgcatgcagtttacataataaataga 95745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 11245 - 11320
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatc 96  Q
    |||||||||||||||| || ||||| || ||||| ||||||||| | |||||||| ||||| |||||| |||||||    
T  11245 ctccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatc 11320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 248998 - 248899
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttaccaaaaaatttctggtc 120  Q
    |||||||||||||||| || ||||| |||||||||||||| || ||||||||||  ||||| ||| |  | |||||||| ||||| ||| | ||||||||    
T  248998 ctccccaacaaaatgggagagtagaaagaaaacatcaacacatcttgaatgtagctagagctttacttttccaatcaaaattacctaaacagttctggtc 248899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 52777916 - 52777991
Alignment:
Q  21 ctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatc 96  Q
    |||||||||||||||| || ||||| || ||||| ||||||||| | |||||||| ||||| |||||| |||||||    
T  52777916 ctccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggtagagctttattatttcaatc 52777991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 2359794 - 2359859
Alignment:
Q  16 agaatctccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagc 81  Q
    |||| |||||||||||||||| || || || |||||||||||||| ||||| ||||| || |||||    
T  2359794 agaaactccccaacaaaatggtagagttgaaagaaaacatcaacacattttaaatgttggtagagc 2359859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 9797174 - 9797110
Alignment:
Q  23 ccccaacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattatt 87  Q
    |||||||||||||| |||||||| ||||| |  ||||||||| | |||||||| ||||| |||||    
T  9797174 ccccaacaaaatgggagggtagaaagaaagcgccaacatattctaaatgtaggcagagccttatt 9797110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 44290028 - 44289915
Alignment:
Q  26 caacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttaccaaaaaatttctggtcatatg 125  Q
    ||||||||||| || || || ||||| || ||||||||| | ||||| || |||||  | ||| |||| || || ||||||||||| |||||||||||||    
T  44290028 caacaaaatggcagagtggaaagaaagcaccaacatattcttaatgttgggagagctatcttatttcattccaaattaccaaaaaaattctggtcatatg 44289929  T
Q  126 ctgtttctcatgct 139  Q
    || || ||||||||    
T  44289928 cttttactcatgct 44289915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 53686 - 53799
Alignment:
Q  26 caacaaaatggaagggtagagagaaaacatcaacatattttgaatgtaggaagagcattattaattcaatcaaatttaccaaaaaatttctggtcatatg 125  Q
    ||||||||||| || || || ||||| || ||||||||| | ||||| || |||||  | ||| |||| || || ||||||||||| |||| ||||||||    
T  53686 caacaaaatggcagagtggaaagaaagcaccaacatattcttaatgttgggagagctatcttatttcattccaaattaccaaaaaaattctagtcatatg 53785  T
Q  126 ctgtttctcatgct 139  Q
    || || ||||||||    
T  53786 cttttactcatgct 53799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University