View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_low_15 (Length: 393)
Name: NF5972_low_15
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 31068093 - 31067894
Alignment:
| Q |
13 |
gagaagatagaaagagagaatgagaaagtgaatgcaatagtggtgccagaagggtctgttgtgacaatggatttcaagtgcactagggtttgggtttggg |
112 |
Q |
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| T |
31068093 |
gagaagatagaaagagagaatgagaaagtgaatgcaatagtggtgccagaagggtctgttgtgacaatggatttcaagtgcactagggtttgggtttggg |
31067994 |
T |
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| Q |
113 |
tcgacaaacatgggagagtcactcgaatgccaaaaataggataactagctacccagctatattatattagtgatgcaatattaatgaataagactggttc |
212 |
Q |
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| T |
31067993 |
tcgacaaacatgggagagtcactcgaatgccaaaaataggataactagctacccagctatattatattagtgatgcaatattaataaataagactggttc |
31067894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 31059418 - 31059230
Alignment:
| Q |
12 |
agagaagatagaaagagagaatgagaaagtgaatgcaatagtggtgccagaagggtctgttgtgacaatggatttcaagtgcactagggtttgggtttgg |
111 |
Q |
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| T |
31059418 |
agagaagattgaaagagagaatcatagagtgaatgcaatagtggtgccggaagggtctcttgtgccaatgaatttcaagtgcactagggtttgggtttgg |
31059319 |
T |
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| Q |
112 |
gtcgacaaacatgggagagtcactcgaatgccaaaaataggataactagctacccagctatattatattagtgatgcaatattaatgaataagact |
207 |
Q |
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| T |
31059318 |
gtcgacaaagaagggaaagtctttcgagtgccaaaaataggataactagctacccagc-------tattagtgatgcaatattaatgaataagact |
31059230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 31067838 - 31067759
Alignment:
| Q |
261 |
atgtatcatgtaacatagtgcccagtttaaaactatgggggtggctagctagtagctagcaaaaatgatcattatcaatgtcttcca |
347 |
Q |
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| T |
31067838 |
atgtatcatgtaacatagtgcccagtttaaaactatgggggtggc-------tggctagcaaaaatgatcattatcaatgtcttcca |
31067759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 342
Target Start/End: Complemental strand, 31059219 - 31059190
Alignment:
| Q |
313 |
tagctagcaaaaatgatcattatcaatgtc |
342 |
Q |
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| T |
31059219 |
tagctagcaaaaatgatcattatcaatgtc |
31059190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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