View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_low_18 (Length: 371)
Name: NF5972_low_18
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_low_18 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 141 - 371
Target Start/End: Original strand, 37362191 - 37362421
Alignment:
| Q |
141 |
gatgataacaattagaatctagataaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaatagagaaaaggtggaagtg |
240 |
Q |
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| T |
37362191 |
gatgataacaattagaatctagataaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaatagagaaaaggtggaagtg |
37362290 |
T |
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| Q |
241 |
aagttaccttaacatcaagaagtccaagtgcgaaagcactccctttctcaacctcatgttcaaacggtgacagctcctgaacagagttgtttacagccag |
340 |
Q |
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| T |
37362291 |
aagttaccttaacatcaagaagtccaagtgcgaaagcgctccctttctcaacctcatgttcaaacggtaacagctcctcaacagaattgttttcagccgg |
37362390 |
T |
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| Q |
341 |
cgattgaagatgtttaatcaaaatgtgacag |
371 |
Q |
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| T |
37362391 |
cgattgaagatgtttaatcaaaatgtgacag |
37362421 |
T |
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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 307
Target Start/End: Original strand, 684184 - 684256
Alignment:
| Q |
235 |
gaagtgaagttaccttaacatcaagaagtccaagtgcgaaagcactccctttctcaacctcatgttcaaacgg |
307 |
Q |
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| T |
684184 |
gaagtgaaattaccttgacagcaagaagtccaagcgcgaaagcactccctttctcaacctcatgttcaaacgg |
684256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 7135603 - 7135542
Alignment:
| Q |
165 |
aaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaatagag |
226 |
Q |
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| T |
7135603 |
aaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaatagag |
7135542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 17831549 - 17831490
Alignment:
| Q |
164 |
taaaacgataaccttgagagaaaattcataaaataaacaaatatgaacaatgatggaata |
223 |
Q |
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| T |
17831549 |
taaaactattaccttgagagaaaattcacaaaatcaacaaatctgaacaacgatggaata |
17831490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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