View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_low_23 (Length: 314)
Name: NF5972_low_23
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 294
Target Start/End: Complemental strand, 32632714 - 32632432
Alignment:
| Q |
11 |
atcatcaaggtcacattgtgtaatgttgtagagaattggaacaatgtaggaatctgcattatgagaagtggtataacagagaaaaccataattcttgcca |
110 |
Q |
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| T |
32632714 |
atcatcaaggtcacattgtgtaatgttgtagagaattggaacaatgtaggaatctgcattatgaggagtggtataacagagaaaagcataattcttgcca |
32632615 |
T |
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| Q |
111 |
tctttctagtgtctacatccatagtaataccataacctatgataaatccaatnnnnnnngtacacattaatgattcaaatcaaacaagtaaaaaggagtc |
210 |
Q |
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| T |
32632614 |
tctttctagtgtctacatccatagtaataccataacctatgataaattcaat-aaaaaagtacacattaatgattcacatcaaacaacttaaaaggagtc |
32632516 |
T |
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| Q |
211 |
taggtaatcctaattgaagaatttgaaacttcaagtatgaaatgcatatgtttgtttcgagaatgcatgtaatattgttttaca |
294 |
Q |
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| T |
32632515 |
taggtgttcctaattgaagaatttgaaacttcaagtatgaaatgcatatgtttgtttcgagaatgcatgtaatattgttttaca |
32632432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 32614024 - 32613783
Alignment:
| Q |
14 |
atcaaggtcacattgtgtaatgttgtagagaattggaacaatgtaggaatctgcattatgagaagtggtataacagagaaaaccataattcttgccatct |
113 |
Q |
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| T |
32614024 |
atcaaggtcacattgcgtaatgttgtagagaaatagaacaaagtgggaatctgcatgatgaggagtggtataacagagaaaaccatgattctcgccatct |
32613925 |
T |
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| Q |
114 |
ttctagtgtctacatccatagtaataccataacctatgataaatccaatnnnnnnngtacacattaatgattcaaatcaaacaagtaaaaaggagtctag |
213 |
Q |
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| T |
32613924 |
ttctagtgtctatatccatagtaatgccataacctatcataaatataa-aaaaatattacacattaagaattcaaat-aaaaaactataaaggagttatg |
32613827 |
T |
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| Q |
214 |
gtaatcctaattgaagaatttgaaacttcaagtatgaaatgcat |
257 |
Q |
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| T |
32613826 |
gtaattctaattgaagaatttaaaacttcatgtatgaaatgcat |
32613783 |
T |
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