View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_low_25 (Length: 278)
Name: NF5972_low_25
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 37027972 - 37028246
Alignment:
| Q |
1 |
tatgctatttggtgtgtggcaaagcctacagttcctgatcctataattcaagtggctatggactatgcctgtgggtctggggctgactgtaaatcagttc |
100 |
Q |
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| T |
37027972 |
tatgctatttggtgtgtggcaaagcctacagttcctgatcctataattcaagtggctatggattatgcctgtgggtctggggctgactgtaaatcagttc |
37028071 |
T |
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| Q |
101 |
agcctaatgggatatgctttcagcccaacacagtgttggcacatgcttcttatgcattcaatagctattggcagaacactaagattggtggggggacttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37028072 |
agcctaatgggatatgctttcagcccaacacagtgttggcacatgcttcttatgcatttaatagctattggcagaacactaagattggtggggggacttg |
37028171 |
T |
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| Q |
201 |
tgattttggtggtactgctatgcttgtcactgttgatccaagtaagtttgcac----taccatatttgattacct |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37028172 |
tgattttggtggtactgctatgcttgtcactgttgatccaagtaagtttgcactacgtaccatatttgattacct |
37028246 |
T |
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