View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5972_low_26 (Length: 271)

Name: NF5972_low_26
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5972_low_26
NF5972_low_26
[»] chr7 (3 HSPs)
chr7 (36-271)||(22883937-22884186)
chr7 (213-268)||(7710916-7710971)
chr7 (213-268)||(3367638-3367693)
[»] chr6 (4 HSPs)
chr6 (31-89)||(30947274-30947332)
chr6 (214-268)||(7600004-7600058)
chr6 (223-260)||(12038109-12038146)
chr6 (223-260)||(20654812-20654849)
[»] chr5 (1 HSPs)
chr5 (213-268)||(19611249-19611304)
[»] chr4 (4 HSPs)
chr4 (213-268)||(54188550-54188605)
chr4 (214-268)||(28462465-28462519)
chr4 (227-268)||(2550273-2550314)
chr4 (213-268)||(8570573-8570628)
[»] chr3 (2 HSPs)
chr3 (213-268)||(23361688-23361743)
chr3 (213-268)||(28696533-28696588)
[»] chr2 (1 HSPs)
chr2 (213-268)||(45402101-45402156)
[»] chr8 (1 HSPs)
chr8 (223-268)||(23241019-23241064)
[»] chr1 (1 HSPs)
chr1 (230-271)||(49101208-49101249)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 36 - 271
Target Start/End: Original strand, 22883937 - 22884186
Alignment:
Q  36 ctcagaatcttcatcttag--tg--ttccaaatatggaggatattatctcaattcatgatagtttgctgagaagatttcatatatttatctaatcttcat 131  Q
    |||||||||||||||||||  ||  ||||||||||| | |||||| |||  ||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  22883937 ctcagaatcttcatcttaggctggcttccaaatatgaatgatattttctacattcatggtagtttgctgagaagatttcatctatttatctaatcttcat 22884036  T
Q  132 cgaattcggcaatcatca-gaa-----caccttggatgtggca---gca--tttatgtgagtctctcttactcttcttccttttttcctccggcaaggta 220  Q
    |||||||||||| || |  |||     || | | |||||  ||   |||  ||||||||||||||||||||||||||||||||||||||| |||||  ||    
T  22884037 cgaattcggcaa-caccttgaatgtggcagcattgatgttccaatcgcagctttatgtgagtctctcttactcttcttccttttttcctctggcaactta 22884135  T
Q  221 ttattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattttac 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22884136 ttattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattttac 22884186  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 7710916 - 7710971
Alignment:
Q  213 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 268  Q
    ||||||||| |||||||||| | |||||||||||||||||||||||||||||||||    
T  7710916 gcaaggtatgattgtgttgcatatgaggtgtttgataatttgactcaatgaaattt 7710971  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 3367693 - 3367638
Alignment:
Q  213 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 268  Q
    |||||||||||||||| ||| | | |||||||||||||||||||||||||||||||    
T  3367693 gcaaggtattattgtgctgcctatcaggtgtttgataatttgactcaatgaaattt 3367638  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 30947274 - 30947332
Alignment:
Q  31 tttgcctcagaatcttcatcttagtgttccaaatatggaggatattatctcaattcatg 89  Q
    |||| ||||||||||||||||||| |||||||||||  |||||||| ||||||||||||    
T  30947274 tttgtctcagaatcttcatcttagggttccaaatatcaaggatattttctcaattcatg 30947332  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 7600004 - 7600058
Alignment:
Q  214 caaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 268  Q
    ||||||||||||||||||| |  |||||||||||||| ||| |||||||||||||    
T  7600004 caaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaattt 7600058  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 260
Target Start/End: Complemental strand, 12038146 - 12038109
Alignment:
Q  223 attgtgttgcgtgtgaggtgtttgataatttgactcaa 260  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  12038146 attgtgttgcgtatgaagtgtttgataatttgactcaa 12038109  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 20654812 - 20654849
Alignment:
Q  223 attgtgttgcgtgtgaggtgtttgataatttgactcaa 260  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  20654812 attgtgttgcgtatgaagtgtttgataatttgactcaa 20654849  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 19611249 - 19611304
Alignment:
Q  213 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 268  Q
    |||||||||||||||||||| |  |||||||||||||| ||| |||||||||||||    
T  19611249 gcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaattt 19611304  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 54188605 - 54188550
Alignment:
Q  213 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 268  Q
    |||||||||||||||| ||| | | ||||||| |||||||||||||||||||||||    
T  54188605 gcaaggtattattgtgctgcctatcaggtgttcgataatttgactcaatgaaattt 54188550  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 28462519 - 28462465
Alignment:
Q  214 caaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 268  Q
    ||||||||||||||||||| |  |||||||||||||| ||| |||||||||||||    
T  28462519 caaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaattt 28462465  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 2550314 - 2550273
Alignment:
Q  227 tgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 268  Q
    |||||| | |||||||||||||||||||||||||||||||||    
T  2550314 tgttgcatatgaggtgtttgataatttgactcaatgaaattt 2550273  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 8570573 - 8570628
Alignment:
Q  213 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 268  Q
    |||||||||||||||| ||| | | ||||||| ||||||||||| |||||||||||    
T  8570573 gcaaggtattattgtgctgcctatcaggtgttcgataatttgacgcaatgaaattt 8570628  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 23361688 - 23361743
Alignment:
Q  213 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 268  Q
    |||||||||||||||||||| |  |||||||||||||| ||| |||||||||||||    
T  23361688 gcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaattt 23361743  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 28696533 - 28696588
Alignment:
Q  213 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 268  Q
    |||||||||||||||| ||| | | ||||||| ||||||||||| |||||||||||    
T  28696533 gcaaggtattattgtgctgcctatcaggtgttcgataatttgacgcaatgaaattt 28696588  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 45402101 - 45402156
Alignment:
Q  213 gcaaggtattattgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 268  Q
    |||||||||||||||||||| |  |||||||||||||| ||| |||||||||||||    
T  45402101 gcaaggtattattgtgttgcataggaggtgtttgataaattgtctcaatgaaattt 45402156  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 23241019 - 23241064
Alignment:
Q  223 attgtgttgcgtgtgaggtgtttgataatttgactcaatgaaattt 268  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||    
T  23241019 attgtgttgcatatgaagtgtttgataatttgactcaatgaaattt 23241064  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 49101208 - 49101249
Alignment:
Q  230 tgcgtgtgaggtgtttgataatttgactcaatgaaattttac 271  Q
    ||||| ||||||||||||||| | ||||||||||||||||||    
T  49101208 tgcgtatgaggtgtttgataaatcgactcaatgaaattttac 49101249  T

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