View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_low_32 (Length: 260)
Name: NF5972_low_32
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 31321715 - 31321950
Alignment:
| Q |
19 |
cattgtcgccaggtgagaattggaatttgtatacttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaaaa |
118 |
Q |
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| T |
31321715 |
cattgtggccaggtgagaattggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaa |
31321814 |
T |
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| Q |
119 |
tggtgagagttgggaagctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgattactattcaatcaactgca |
218 |
Q |
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| T |
31321815 |
tggtgagagttgggaagctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgatcactattcaatcaactgca |
31321914 |
T |
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| Q |
219 |
ttttgtatttcaaataggattgtagatattcttcga |
254 |
Q |
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| T |
31321915 |
ttttgtatttcaaataggattgtagattttcttcga |
31321950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 31333968 - 31334203
Alignment:
| Q |
19 |
cattgtcgccaggtgagaattggaatttgtatacttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaaaa |
118 |
Q |
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| T |
31333968 |
cattgtggccaggtgagaattggaatttgtatacttctgctcatcaaatggggagttgtagaatgggagtgaatgaaaaggaaggtgctgttgatgaaaa |
31334067 |
T |
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| Q |
119 |
tggtgagagttgggaagctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgattactattcaatcaactgca |
218 |
Q |
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| T |
31334068 |
tggtgagagttgggaagctgaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgatcactattcaatcaactgca |
31334167 |
T |
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| Q |
219 |
ttttgtatttcaaataggattgtagatattcttcga |
254 |
Q |
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| T |
31334168 |
ttttgtatttcaaataggattgtagattttcttcga |
31334203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 211
Target Start/End: Original strand, 39110404 - 39110562
Alignment:
| Q |
53 |
ttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagctgaagggttgtttgtt |
152 |
Q |
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| T |
39110404 |
ttctgcacatcaaatgggaagttgtagaatgggtaagaatgaagaagagggtgcagttgatgagaatggagaaagttgggaagcaaaagggttgtatgtg |
39110503 |
T |
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| Q |
153 |
tgtgatgctagtgttcttccaactgctgttggtgttaatcctatgattactattcaatc |
211 |
Q |
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| T |
39110504 |
tgtgatggaagtgttttgcctagtgcagttggtgttaaccctatggtaaccattcaatc |
39110562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 10926283 - 10926339
Alignment:
| Q |
179 |
tgttggtgttaatcctatgattactattcaatcaactgcattttgtatttcaaatag |
235 |
Q |
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| T |
10926283 |
tgttagtgttaatcctctaataactattcaatcaactgcattttgtatttcaaatag |
10926339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 208
Target Start/End: Complemental strand, 33521232 - 33521062
Alignment:
| Q |
38 |
ttggaatttgtatacttctgctcatcaaatgggaagttgcaaaatgggagtgaatgaaaaggaaggtgctgttgatgaaaatggtgagagttgggaagct |
137 |
Q |
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| T |
33521232 |
ttggaatatgtatgcatctgctcaccagatggggagttgtaggataggaatcactgataaggaaggcacggttgatgaaaatggacagaattgggaagct |
33521133 |
T |
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| Q |
138 |
gaagggttgtttgtttgtgatgctagtgttcttccaactgctgttggtgttaatcctatgattactattca |
208 |
Q |
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| T |
33521132 |
gaaggactatttgtgtgtgatgcaagtttgtttccaactgccataggtatcaatcccatgataactattca |
33521062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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