View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_low_33 (Length: 259)
Name: NF5972_low_33
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 48017983 - 48017763
Alignment:
| Q |
21 |
gtggcgaggtagtgaacagtcgcgccaatggccaacacacctccactcaaatgggttccggccactttgctgaagatggctttggaaaagcaagctactt |
120 |
Q |
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| T |
48017983 |
gtggcgaggtagtgaacagtcgcgccaatggccaacacacctccactcaaatgggttccggccactttgctgaagatggctttggaaaagcaagctactt |
48017884 |
T |
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| Q |
121 |
caggaaccttgagatcgtagacaccgacaacagtctcacctccgcgaccaacatcttaaccttagcccagaacaaaaactgttacaatatcaagagctcc |
220 |
Q |
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| T |
48017883 |
caggaaccttgagatcgtagacaccgacaacagtctcacctccgcgaccaacatcttaaccttagcccagaacaaaaactgttacaatatcaagagctcc |
48017784 |
T |
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| Q |
221 |
tacaacaacaaatggggcaca |
241 |
Q |
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| T |
48017783 |
tacaacaacaaatggggcaca |
48017763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 35409744 - 35409829
Alignment:
| Q |
50 |
ggccaacacacctccactcaaatgggttccggccactttgctgaagatggctttggaaaagcaagctacttcaggaaccttgagat |
135 |
Q |
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| T |
35409744 |
ggccgacacacctccactcagatgggttccggccactttgccgaggatggtttcggaaaagcaagctactttcggaaccttgagat |
35409829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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