View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5972_low_35 (Length: 240)
Name: NF5972_low_35
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_low_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 738962 - 739186
Alignment:
| Q |
1 |
aaactatattatcttagttactaaaagctttaccatcattcccttaaaatnnnnnnnngaagctttactaccattattaaaaaatacctatattttattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
738962 |
aaactatattatcttagttactaaaagctttaccatcattcccttaaaataaaaaaaagaagctttactaccattattaaaaaatacctatattttattt |
739061 |
T |
|
| Q |
101 |
atagannnnnnnnnngtttctaagtccactacaataataaatattatattcatcattcagaagaacttatttagggctcctgttaaaggacatttaattc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
739062 |
atagattttttttttgtttctaagtccactacaataataaatattatattcatcattcagaagaacttatttagggctcctgttaaaggacatttaattc |
739161 |
T |
|
| Q |
201 |
aagaactaagctcataagtgtaaac |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
739162 |
aagaactaagctcataagtgtaaac |
739186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 746824 - 746600
Alignment:
| Q |
1 |
aaactatattatcttagttactaaaagctttaccatcattcccttaaaatnnnnnnnngaagctttactaccattattaaaaaatacctatattttattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
746824 |
aaactatattatcttagttactaaaagctttaccatcattcccttaaaataaaaaaaagaagctttactaccattattaaaaaatacctatattttattt |
746725 |
T |
|
| Q |
101 |
atagannnnnnnnnngtttctaagtccactacaataataaatattatattcatcattcagaagaacttatttagggctcctgttaaaggacatttaattc |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
746724 |
atagattttttttttgtttctaagtccactacaataataaatattatattcatcattcagaagaacttatttagggctcctgttaaaggacatttaattc |
746625 |
T |
|
| Q |
201 |
aagaactaagctcataagtgtaaac |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
746624 |
aagaactaagctcataagtgtaaac |
746600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 711449 - 711223
Alignment:
| Q |
1 |
aaactatattatcttagttactaaaagctttaccatcattcccttaaaatnnnnnnnngaagctttactaccattattaaaaaatacctatattttattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
711449 |
aaactatattatcttagttactaaaagctttaccatcattcccttaaaataaaaaaaagaagctttactaccattattaaaaaatacctatattttattt |
711350 |
T |
|
| Q |
101 |
atagannnnnnnnnn--gtttctaagtccactacaataataaatattatattcatcattcagaagaacttatttagggctcctgttaaaggacatttaat |
198 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
711349 |
atagattttttttttttgtttctaagtccactacaataataaatattatattcatcattcagaagaacttatttagggctcctgttaaaagacatttaat |
711250 |
T |
|
| Q |
199 |
tcaagaactaagctcataagtgtaaac |
225 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
711249 |
tcaagaactaagctcataagtgtaaac |
711223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University