View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_low_4 (Length: 504)
Name: NF5972_low_4
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Original strand, 4694276 - 4694766
Alignment:
| Q |
1 |
gtctcacactatcaaaaaagtctgggacagaaaataaa-gtaagcctactttttacatcaaataaaatagaggtaaacagtgtttaccaccgccaccaat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4694276 |
gtctcacactatcaaaaaagtctgggacagaaaataaaagtaagcctactttttacatcaaataaaatagaggtaaactttgtttaccaccgccaccaat |
4694375 |
T |
|
| Q |
100 |
ccggtgtgaaccaccctcaaactttggtgtatcggttggctctcataaacaaaacaacaaaactttcgctaaaaagttccacccaacgaaccctaaaagg |
199 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4694376 |
ccggtgtgaaccaccctcaaactttggtgtgtcggtttgctctcataaacaaaacaacaaaactttcgttaaaaagttccacccaacgaaccctaaaagg |
4694475 |
T |
|
| Q |
200 |
tgagaggatatttttcttcttcttgttcagtactcaacaaacccactattctacgcaactcatagtggcaagtgcttaggattattcacatgtaatgggt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4694476 |
tgagaggatatttttcttcttcttgttcagtactcaacaaacccactattctacgcaactcatagtggcaagtgcttaggattattcacatgtaatgggt |
4694575 |
T |
|
| Q |
300 |
cctatggggtccgtaatctattgtctgcttctatctggtttgaagcattgtccactgtggctgctggtaagccgtgtacatcctatggttttgccacttt |
399 |
Q |
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| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4694576 |
catatggggtccgtaatccattgtctgcttctatctggtttgaatcattgtccactgtggctgctggtaagccgtgtacatcctatggttttgccacttt |
4694675 |
T |
|
| Q |
400 |
atggaccccaaacacaaaaatgcttgcaacttgcaattaataaagtgcaatttcttctctattaattagctagttgaccaatcttttcccc |
490 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4694676 |
atggaccccaaacacaaaaatgcttgcaacttgcaattaataaagtgcaatttcttctctattaattagctagttgaccaatcttttcccc |
4694766 |
T |
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