View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5972_low_44 (Length: 211)

Name: NF5972_low_44
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5972_low_44
NF5972_low_44
[»] chr5 (9 HSPs)
chr5 (143-194)||(11246476-11246527)
chr5 (143-194)||(29561710-29561761)
chr5 (147-192)||(37986853-37986898)
chr5 (142-186)||(41539384-41539428)
chr5 (143-186)||(22687863-22687906)
chr5 (143-182)||(27095518-27095557)
chr5 (153-186)||(36116871-36116904)
chr5 (147-192)||(38040329-38040374)
chr5 (142-186)||(31556888-31556932)
[»] chr2 (9 HSPs)
chr2 (143-186)||(34107344-34107387)
chr2 (143-186)||(1244639-1244682)
chr2 (143-186)||(35352386-35352429)
chr2 (143-194)||(39334863-39334914)
chr2 (155-194)||(45314472-45314511)
chr2 (143-186)||(36345163-36345206)
chr2 (143-185)||(20942091-20942133)
chr2 (147-192)||(30737045-30737090)
chr2 (147-183)||(12206571-12206607)
[»] chr4 (9 HSPs)
chr4 (143-185)||(12585541-12585583)
chr4 (143-185)||(54854161-54854203)
chr4 (143-192)||(20610803-20610852)
chr4 (147-194)||(27921958-27922005)
chr4 (143-186)||(32887201-32887244)
chr4 (147-186)||(33359887-33359926)
chr4 (147-186)||(49039431-49039470)
chr4 (148-184)||(6202675-6202711)
chr4 (143-194)||(39293590-39293642)
[»] chr8 (12 HSPs)
chr8 (142-186)||(11900635-11900679)
chr8 (143-185)||(12926460-12926502)
chr8 (147-192)||(14011024-14011069)
chr8 (143-186)||(220344-220387)
chr8 (143-186)||(689499-689542)
chr8 (143-186)||(733967-734010)
chr8 (143-186)||(857863-857906)
chr8 (147-186)||(6372590-6372629)
chr8 (143-185)||(39208851-39208893)
chr8 (146-186)||(6325339-6325379)
chr8 (155-191)||(26773696-26773732)
chr8 (148-184)||(44254299-44254335)
[»] scaffold0129 (1 HSPs)
scaffold0129 (143-186)||(7126-7169)
[»] chr3 (5 HSPs)
chr3 (143-186)||(21248972-21249015)
chr3 (143-192)||(4478350-4478399)
chr3 (142-185)||(6054206-6054249)
chr3 (143-184)||(38571404-38571445)
chr3 (143-186)||(36763501-36763545)
[»] chr1 (13 HSPs)
chr1 (143-186)||(23973464-23973507)
chr1 (143-185)||(9163354-9163395)
chr1 (146-194)||(3261920-3261968)
chr1 (147-186)||(3341722-3341761)
chr1 (143-186)||(13941389-13941432)
chr1 (147-186)||(23750220-23750259)
chr1 (147-186)||(41677130-41677169)
chr1 (151-186)||(48260179-48260214)
chr1 (143-193)||(8758351-8758401)
chr1 (148-186)||(9976371-9976409)
chr1 (152-186)||(11238019-11238053)
chr1 (148-186)||(16182879-16182917)
chr1 (148-186)||(43020681-43020719)
[»] chr7 (10 HSPs)
chr7 (142-194)||(8903776-8903828)
chr7 (142-186)||(26734252-26734296)
chr7 (147-186)||(10020455-10020494)
chr7 (143-182)||(32309130-32309169)
chr7 (143-192)||(23470483-23470532)
chr7 (142-186)||(1649222-1649266)
chr7 (146-186)||(3955030-3955070)
chr7 (142-186)||(7162649-7162693)
chr7 (142-182)||(38363233-38363273)
chr7 (143-191)||(41000825-41000873)
[»] scaffold0119 (1 HSPs)
scaffold0119 (143-186)||(1109-1152)
[»] chr6 (4 HSPs)
chr6 (143-186)||(26669641-26669684)
chr6 (143-185)||(4844214-4844256)
chr6 (149-185)||(1395578-1395614)
chr6 (142-186)||(24256986-24257030)


Alignment Details
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 11246476 - 11246527
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtggtatgtctg 194  Q
    |||||||||||||||||||||| ||||||||| ||||||||||| |||||||    
T  11246476 tagtctagtggctagaattcacctttttcaagctgaataagtgggatgtctg 11246527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 29561761 - 29561710
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtggtatgtctg 194  Q
    |||| |||||| |||||||||| ||||||||||||||||||||| |||||||    
T  29561761 tagtttagtggttagaattcacctttttcaagatgaataagtgggatgtctg 29561710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 37986853 - 37986898
Alignment:
Q  147 ctagtggctagaattcacatttttcaagatgaataagtggtatgtc 192  Q
    |||||||||||||||||| ||||||||| ||||||||||| |||||    
T  37986853 ctagtggctagaattcacctttttcaaggtgaataagtgggatgtc 37986898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 41539428 - 41539384
Alignment:
Q  142 atagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    ||||||||||| ||||||||||| ||||||||||| |||||||||    
T  41539428 atagtctagtgactagaattcacctttttcaagattaataagtgg 41539384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 22687863 - 22687906
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||    
T  22687863 tagtctagtggttagaattcacctttttcaaggtgaataagtgg 22687906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 27095518 - 27095557
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataa 182  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  27095518 tagtctagtggctagaattcacattttttcagatgaataa 27095557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 186
Target Start/End: Original strand, 36116871 - 36116904
Alignment:
Q  153 gctagaattcacatttttcaagatgaataagtgg 186  Q
    |||||||||||||||||| |||||||||||||||    
T  36116871 gctagaattcacatttttgaagatgaataagtgg 36116904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 38040374 - 38040329
Alignment:
Q  147 ctagtggctagaattcacatttttcaagatgaataagtggtatgtc 192  Q
    |||||| ||| ||||||| ||||||||||||||||||||| |||||    
T  38040374 ctagtgactataattcacctttttcaagatgaataagtgggatgtc 38040329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 31556932 - 31556888
Alignment:
Q  142 atagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||| ||||||||||||||||||  |||||||| |||||||||||    
T  31556932 atagcctagtggctagaattcacccttttcaaggtgaataagtgg 31556888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 34107387 - 34107344
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  34107387 tagtctagtggctagaattcacatttttcaaggtgaataagtgg 34107344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 1244682 - 1244639
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||||||||||||||||||||| ||||||||| |||||||||||    
T  1244682 tagtctagtggctagaattcacctttttcaaggtgaataagtgg 1244639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 35352386 - 35352429
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||||||||| ||||||||||||||||||||| |||||||||||    
T  35352386 tagtctagtgactagaattcacatttttcaaggtgaataagtgg 35352429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 39334863 - 39334914
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtggtatgtctg 194  Q
    |||||||||||||||||||||| ||||||||  ||||||||||| |||||||    
T  39334863 tagtctagtggctagaattcacctttttcaaagtgaataagtgggatgtctg 39334914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 45314511 - 45314472
Alignment:
Q  155 tagaattcacatttttcaagatgaataagtggtatgtctg 194  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  45314511 tagaattcacatttttcaagatgaataagtgggatgtctg 45314472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 36345163 - 36345206
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||| |||||||||||| |||| |||||||||||||||||||||    
T  36345163 tagtttagtggctagaactcacctttttcaagatgaataagtgg 36345206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 20942091 - 20942133
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtg 185  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||    
T  20942091 tagtctagtgactagaattcacttttttcaaggtgaataagtg 20942133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 30737090 - 30737045
Alignment:
Q  147 ctagtggctagaattcacatttttcaagatgaataagtggtatgtc 192  Q
    |||||| ||||||||||||||||| ||| ||||||||||| |||||    
T  30737090 ctagtgactagaattcacattttttaaggtgaataagtgggatgtc 30737045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 12206607 - 12206571
Alignment:
Q  147 ctagtggctagaattcacatttttcaagatgaataag 183  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  12206607 ctagtggctagaattcacctttttcaaggtgaataag 12206571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 12585541 - 12585583
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtg 185  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  12585541 tagtctagtggctagaattcacctttttcaagatgaataagtg 12585583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 54854161 - 54854203
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtg 185  Q
    |||||||||||||||||||||| ||||||||| ||||||||||    
T  54854161 tagtctagtggctagaattcacttttttcaaggtgaataagtg 54854203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 20610852 - 20610803
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtggtatgtc 192  Q
    |||||||||||||||||||||| ||||| ||| ||||||||||| |||||    
T  20610852 tagtctagtggctagaattcaccttttttaaggtgaataagtgggatgtc 20610803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 27922005 - 27921958
Alignment:
Q  147 ctagtggctagaattcacatttttcaagatgaataagtggtatgtctg 194  Q
    ||||||| |||||||||||||||| ||||||||||||||  |||||||    
T  27922005 ctagtggttagaattcacattttttaagatgaataagtgagatgtctg 27921958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 32887244 - 32887201
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||||| ||||||| ||||||||||||||||||| |||||||||    
T  32887244 tagtcttgtggctaaaattcacatttttcaagattaataagtgg 32887201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 33359926 - 33359887
Alignment:
Q  147 ctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  33359926 ctagtggctagaattcacctttttcaaggtgaataagtgg 33359887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 49039431 - 49039470
Alignment:
Q  147 ctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  49039431 ctagtggctagaattcacctttttcaaggtgaataagtgg 49039470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 6202711 - 6202675
Alignment:
Q  148 tagtggctagaattcacatttttcaagatgaataagt 184  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  6202711 tagtgactagaattcacctttttcaagatgaataagt 6202675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 39293642 - 39293590
Alignment:
Q  143 tagtctagtggctagaattcacattttt-caagatgaataagtggtatgtctg 194  Q
    ||||||||| |||||||||||| ||||| |||| ||||||||||| |||||||    
T  39293642 tagtctagtagctagaattcaccttttttcaaggtgaataagtgggatgtctg 39293590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 11900679 - 11900635
Alignment:
Q  142 atagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||    
T  11900679 atagtttagtggctagaattcacctttttcaagatgaataagtgg 11900635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 12926460 - 12926502
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtg 185  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  12926460 tagtctagtggctagaatttacctttttcaagatgaataagtg 12926502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 14011024 - 14011069
Alignment:
Q  147 ctagtggctagaattcacatttttcaagatgaataagtggtatgtc 192  Q
    ||||||| |||||||||||||||| ||||||||||||||| |||||    
T  14011024 ctagtggttagaattcacattttttaagatgaataagtgggatgtc 14011069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 220344 - 220387
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||    
T  220344 tagtctagtggttagaattcacctttttcaaggtgaataagtgg 220387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 689499 - 689542
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||    
T  689499 tagtctagtggttagaattcacctttttcaaggtgaataagtgg 689542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 733967 - 734010
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||    
T  733967 tagtctagtggttagaattcacctttttcaaggtgaataagtgg 734010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 857863 - 857906
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||    
T  857863 tagtctagtggttagaattcacctttttcaaggtgaataagtgg 857906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 6372590 - 6372629
Alignment:
Q  147 ctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  6372590 ctagtggcaagaattcacatttttcaatatgaataagtgg 6372629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Original strand, 39208851 - 39208893
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtg 185  Q
    |||||||||||||||||||||| ||||| ||| ||||||||||    
T  39208851 tagtctagtggctagaattcacctttttaaaggtgaataagtg 39208893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 6325379 - 6325339
Alignment:
Q  146 tctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    ||||||||||||||||||| ||||||||| ||||| |||||    
T  6325379 tctagtggctagaattcacctttttcaaggtgaatgagtgg 6325339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 26773696 - 26773732
Alignment:
Q  155 tagaattcacatttttcaagatgaataagtggtatgt 191  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  26773696 tagaattcacattttttaagatgaataagtggaatgt 26773732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 44254299 - 44254335
Alignment:
Q  148 tagtggctagaattcacatttttcaagatgaataagt 184  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  44254299 tagtggctaaaattcacatttttcaaggtgaataagt 44254335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 7169 - 7126
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    ||||| |||||||||||||||| |||||||||||||||||||||    
T  7169 tagtcaagtggctagaattcacctttttcaagatgaataagtgg 7126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 21248972 - 21249015
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||||||||||||||||||||| ||||||||| |||||||||||    
T  21248972 tagtctagtggctagaattcacctttttcaaggtgaataagtgg 21249015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 4478350 - 4478399
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtggtatgtc 192  Q
    |||||||||||||| |||| |||||||| ||||||||||||||| |||||    
T  4478350 tagtctagtggctaaaatttacatttttaaagatgaataagtgggatgtc 4478399  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 6054206 - 6054249
Alignment:
Q  142 atagtctagtggctagaattcacatttttcaagatgaataagtg 185  Q
    |||||||||||| |||||||||| ||||||||| ||||||||||    
T  6054206 atagtctagtggttagaattcacctttttcaaggtgaataagtg 6054249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 38571404 - 38571445
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagt 184  Q
    ||||||||||||||||||||||  |||||||| |||||||||    
T  38571404 tagtctagtggctagaattcaccattttcaaggtgaataagt 38571445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 36763545 - 36763501
Alignment:
Q  143 tagtctagtggctagaa-ttcacatttttcaagatgaataagtgg 186  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||||    
T  36763545 tagtctagtggctagaaattcacctttttaaagatgaataagtgg 36763501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 23973464 - 23973507
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||||||||||||||||||||||||||||||  |||||||||||    
T  23973464 tagtctagtggctagaattcacatttttcaacgtgaataagtgg 23973507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 9163395 - 9163354
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtg 185  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  9163395 tagtctagtggctagaattcacattttt-aagatgaataagtg 9163354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 3261968 - 3261920
Alignment:
Q  146 tctagtggctagaattcacatttttcaagatgaataagtggtatgtctg 194  Q
    |||| ||| |||||||||||||||||||| ||||||||||| |||||||    
T  3261968 tctactggttagaattcacatttttcaaggtgaataagtggaatgtctg 3261920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 3341722 - 3341761
Alignment:
Q  147 ctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  3341722 ctagtggctagaattcacctttttcaaggtgaataagtgg 3341761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 13941432 - 13941389
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||| |||||| |||||||||| |||||||||||||||||||||    
T  13941432 tagtttagtggttagaattcacttttttcaagatgaataagtgg 13941389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 23750259 - 23750220
Alignment:
Q  147 ctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  23750259 ctagtggttagaattcacctttttcaagatgaataagtgg 23750220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 186
Target Start/End: Complemental strand, 41677169 - 41677130
Alignment:
Q  147 ctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||||||||||||||||| ||||||||| |||||||||||    
T  41677169 ctagtggctagaattcacctttttcaaggtgaataagtgg 41677130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 186
Target Start/End: Original strand, 48260179 - 48260214
Alignment:
Q  151 tggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||||||||||||||||||||||| |||||||||||    
T  48260179 tggctagaattcacatttttcaaggtgaataagtgg 48260214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Original strand, 8758351 - 8758401
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtggtatgtct 193  Q
    ||||||| ||| ||||||||||||||| || ||||||||||||| ||||||    
T  8758351 tagtctaatggttagaattcacattttccatgatgaataagtgggatgtct 8758401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 9976371 - 9976409
Alignment:
Q  148 tagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  9976371 tagtggctagaattcacttttttcaaggtgaataagtgg 9976409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 11238019 - 11238053
Alignment:
Q  152 ggctagaattcacatttttcaagatgaataagtgg 186  Q
    ||||||||||||| |||||||||||||||||||||    
T  11238019 ggctagaattcacctttttcaagatgaataagtgg 11238053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 16182917 - 16182879
Alignment:
Q  148 tagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  16182917 tagtggttagaattcatatttttcaagatgaataagtgg 16182879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 43020719 - 43020681
Alignment:
Q  148 tagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  43020719 tagtggctagaattcacatttttcaaggtgaatgagtgg 43020681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 8903776 - 8903828
Alignment:
Q  142 atagtctagtggctagaattcacatttttcaagatgaataagtggtatgtctg 194  Q
    ||||||||||| ||||||||||| || ||||||||||||||||| | ||||||    
T  8903776 atagtctagtgactagaattcactttattcaagatgaataagtgatgtgtctg 8903828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 26734252 - 26734296
Alignment:
Q  142 atagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||    
T  26734252 atagcctagtggctagaattcacctttttcaaggtgaataagtgg 26734296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 10020455 - 10020494
Alignment:
Q  147 ctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  10020455 ctagtgggtagaattcacctttttcaagatgaataagtgg 10020494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 32309130 - 32309169
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataa 182  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  32309130 tagtctagtggctagaattcacattttttaaggtgaataa 32309169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 23470483 - 23470532
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtggtatgtc 192  Q
    ||||||||||| ||||| |||| ||||||||||||||||| ||| |||||    
T  23470483 tagtctagtggttagaactcacctttttcaagatgaataaatgggatgtc 23470532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 1649266 - 1649222
Alignment:
Q  142 atagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||| ||||||||||||||||||  |||||||| |||||||||||    
T  1649266 atagcctagtggctagaattcaccattttcaaggtgaataagtgg 1649222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 3955030 - 3955070
Alignment:
Q  146 tctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||| |||||| ||||||||||||| |||||||||||||||    
T  3955030 tctaatggctaaaattcacattttttaagatgaataagtgg 3955070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 7162649 - 7162693
Alignment:
Q  142 atagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||| ||||| | |||||||||| |||||||||||||||||||||    
T  7162649 atagcctagtagttagaattcacctttttcaagatgaataagtgg 7162693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 38363273 - 38363233
Alignment:
Q  142 atagtctagtggctagaattcacatttttcaagatgaataa 182  Q
    |||||||||||| |||||||||| ||||| |||||||||||    
T  38363273 atagtctagtggttagaattcaccttttttaagatgaataa 38363233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 41000873 - 41000825
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtggtatgt 191  Q
    |||||| |||| |||||||||||||||| ||| ||||||||||| ||||    
T  41000873 tagtctggtggttagaattcacattttttaaggtgaataagtgggatgt 41000825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 1152 - 1109
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||    
T  1152 tagtttagtggctagaattcacctttttcaaggtgaataagtgg 1109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 26669641 - 26669684
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||    
T  26669641 tagtttagtggctagaattcacctttttcaaggtgaataagtgg 26669684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 4844256 - 4844214
Alignment:
Q  143 tagtctagtggctagaattcacatttttcaagatgaataagtg 185  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||    
T  4844256 tagtctagtggttagaattcacttttttcaaggtgaataagtg 4844214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 1395578 - 1395614
Alignment:
Q  149 agtggctagaattcacatttttcaagatgaataagtg 185  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  1395578 agtggctagaattcacctttttcaaggtgaataagtg 1395614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 24257030 - 24256986
Alignment:
Q  142 atagtctagtggctagaattcacatttttcaagatgaataagtgg 186  Q
    |||| ||||||||||||||| || ||||||||| |||||||||||    
T  24257030 atagcctagtggctagaatttacttttttcaaggtgaataagtgg 24256986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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