View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_low_5 (Length: 494)
Name: NF5972_low_5
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 13246065 - 13245934
Alignment:
| Q |
39 |
tgttgaatatggcgaagaagaagagaaacgagtgacgttgaatgactcggctcagatggataatcttaatgaagactatgaaaggatacaattggtgatg |
138 |
Q |
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| T |
13246065 |
tgttgaatatggcgaagaagaagagaaacgagtgacgttgaatgactcggctcagatggataatcttaatgaagactatgaaaggatacaattggtgatg |
13245966 |
T |
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| Q |
139 |
aatgagttggttaaattggaaattcagttggc |
170 |
Q |
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| T |
13245965 |
aatgagttggttaaattggaaattcagttggc |
13245934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 13245875 - 13245811
Alignment:
| Q |
178 |
gcaagaattgatctcgaggatcgaatgaagtatatacggagttttatgcggatttatctcaagtc |
242 |
Q |
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| T |
13245875 |
gcaagcattgatctcgaggatcgaatgaagtatatacggagttttatgcggatttatctcaagtc |
13245811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 282
Target Start/End: Complemental strand, 13245680 - 13245641
Alignment:
| Q |
243 |
gttttacgctggcctcaaataagaactcatcatattgtca |
282 |
Q |
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| T |
13245680 |
gttttacgttggcctcgaataagaactcatcatattgtca |
13245641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 355
Target Start/End: Original strand, 6829518 - 6829550
Alignment:
| Q |
323 |
gtggcaccagtagttcttaatgaggttaacctg |
355 |
Q |
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| T |
6829518 |
gtggcaccagtagttcttaatgaggttaacctg |
6829550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 7308638 - 7308580
Alignment:
| Q |
184 |
attgatctcgaggatcgaatgaagtatatacggagttttatgcggatttatctcaagtc |
242 |
Q |
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| T |
7308638 |
attgatctggaggatcgaatgacgtatctccggagctttatacgaatttatctcaagtc |
7308580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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