View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972_low_8 (Length: 450)
Name: NF5972_low_8
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Complemental strand, 6674235 - 6673815
Alignment:
| Q |
19 |
aaaggagaccctataaagtttgtatcccaagaaatccttatgttatgagctgctataagattccagaagggtgttgcaaaggacattgaagcaatgttgg |
118 |
Q |
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| T |
6674235 |
aaaggagaccctataaagtttgtatcccaagaaatccttatgttatgagctgctataagattccggaagggtgttgcaaaggatattgaagcaatgttgg |
6674136 |
T |
|
| Q |
119 |
agactcccggatgataaacgtatttggcattgggagcgagatggtctatattccgtttgatcagcctaccactttcagaaagaggaaaagaatagagcta |
218 |
Q |
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| T |
6674135 |
agactcccggatgataaacgtatttgggattgggagcgagatggtctatattccgttggatcagcctaccactttcagaaagaggaaaagaatagagcta |
6674036 |
T |
|
| Q |
219 |
ccgcggagccatccaacactaataatgacggactctggagactcttggatgataaacttatttggagttggggtatgctcattcgcaatcatagatgact |
318 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| | || |
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| T |
6674035 |
ccgcggagccctccaacactaatagtgacggactctggagactcctggatgataaacttatttggagtttgggtatgctcattcgcaatcatagagggct |
6673936 |
T |
|
| Q |
319 |
cagatggtgtcttaatttggcaaacgaacaaatgtatgagaacctacacattgaacttcatgctgaggttgttgtcaagtgacttcacggcaaactgaat |
418 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6673935 |
cagatggtgtcttaatttggcaaactaacaaatgtatgagaacctacacattgaacttcatgctgaggttgttgtcaagtgacttcatggcaaactgaat |
6673836 |
T |
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| Q |
419 |
ctgtctgagttagatgatgtc |
439 |
Q |
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||||||||||||||| ||||| |
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| T |
6673835 |
ctgtctgagttagataatgtc |
6673815 |
T |
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