View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5973-Insertion-2 (Length: 1000)

Name: NF5973-Insertion-2
Description: NF5973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5973-Insertion-2
NF5973-Insertion-2
[»] chr4 (38 HSPs)
chr4 (374-521)||(32818352-32818499)
chr4 (364-521)||(35065019-35065176)
chr4 (363-476)||(8604593-8604706)
chr4 (395-503)||(26617442-26617550)
chr4 (379-521)||(9134566-9134706)
chr4 (404-502)||(49138775-49138872)
chr4 (376-502)||(55927754-55927880)
chr4 (393-502)||(50061629-50061738)
chr4 (384-495)||(11271530-11271641)
chr4 (407-507)||(30357482-30357582)
chr4 (374-481)||(21691194-21691301)
chr4 (376-521)||(25319003-25319149)
chr4 (365-456)||(45011895-45011986)
chr4 (374-500)||(53713543-53713669)
chr4 (379-475)||(16551959-16552053)
chr4 (394-475)||(52965856-52965937)
chr4 (405-505)||(20712827-20712927)
chr4 (376-508)||(33347154-33347286)
chr4 (362-521)||(33560540-33560700)
chr4 (363-526)||(46344805-46344965)
chr4 (394-500)||(9064208-9064314)
chr4 (378-456)||(20718638-20718716)
chr4 (378-500)||(22250203-22250325)
chr4 (445-499)||(29779107-29779161)
chr4 (364-481)||(1616387-1616503)
chr4 (363-507)||(22683833-22683978)
chr4 (404-473)||(53655174-53655243)
chr4 (382-497)||(25927288-25927401)
chr4 (671-715)||(34222350-34222394)
chr4 (458-521)||(2635119-2635182)
chr4 (378-469)||(10185202-10185293)
chr4 (379-474)||(44278954-44279049)
chr4 (387-482)||(14596684-14596781)
chr4 (649-790)||(4145174-4145314)
chr4 (404-521)||(30472890-30473007)
chr4 (365-502)||(39386608-39386745)
chr4 (404-465)||(42971914-42971975)
chr4 (348-424)||(45694667-45694744)
[»] chr8 (26 HSPs)
chr8 (365-521)||(32927848-32928004)
chr8 (374-500)||(4662885-4663011)
chr8 (365-503)||(37684379-37684517)
chr8 (374-503)||(16972046-16972175)
chr8 (649-800)||(10354742-10354892)
chr8 (374-502)||(26100128-26100257)
chr8 (364-476)||(35494991-35495103)
chr8 (393-502)||(44141051-44141160)
chr8 (376-500)||(35495237-35495361)
chr8 (394-485)||(13384656-13384747)
chr8 (365-500)||(32101050-32101185)
chr8 (394-503)||(38868472-38868581)
chr8 (404-481)||(15677827-15677905)
chr8 (378-456)||(32736483-32736561)
chr8 (363-521)||(7533753-7533911)
chr8 (374-476)||(38335843-38335945)
chr8 (376-481)||(32994226-32994331)
chr8 (459-521)||(42455868-42455930)
chr8 (445-520)||(11791786-11791862)
chr8 (650-790)||(21226925-21227065)
chr8 (394-476)||(30098911-30098991)
chr8 (364-414)||(9461510-9461560)
chr8 (430-508)||(11572496-11572574)
chr8 (302-339)||(2206460-2206497)
chr8 (422-499)||(10367973-10368050)
chr8 (469-502)||(40881074-40881107)
[»] chr1 (32 HSPs)
chr1 (643-790)||(11049053-11049200)
chr1 (380-475)||(11049252-11049347)
chr1 (374-503)||(28083870-28083999)
chr1 (374-474)||(1514346-1514446)
chr1 (374-477)||(30557504-30557605)
chr1 (363-470)||(7524120-7524227)
chr1 (9-72)||(11049695-11049758)
chr1 (394-502)||(6021779-6021887)
chr1 (147-227)||(11049541-11049621)
chr1 (363-497)||(10324909-10325043)
chr1 (376-476)||(3016163-3016263)
chr1 (394-502)||(7790644-7790752)
chr1 (394-478)||(30850401-30850485)
chr1 (378-505)||(3416052-3416179)
chr1 (394-473)||(28287338-28287417)
chr1 (421-520)||(47892417-47892516)
chr1 (394-503)||(47321909-47322017)
chr1 (382-507)||(50569633-50569758)
chr1 (365-503)||(2099660-2099797)
chr1 (462-521)||(24587865-24587924)
chr1 (376-490)||(48548998-48549110)
chr1 (376-474)||(34915069-34915167)
chr1 (472-521)||(646136-646185)
chr1 (365-442)||(6283221-6283298)
chr1 (302-473)||(32369945-32370112)
chr1 (404-474)||(40662993-40663061)
chr1 (448-521)||(12655200-12655274)
chr1 (384-497)||(20026156-20026270)
chr1 (383-476)||(35961371-35961462)
chr1 (669-699)||(49581747-49581777)
chr1 (394-435)||(38797631-38797672)
chr1 (420-473)||(51500862-51500915)
[»] chr7 (22 HSPs)
chr7 (292-497)||(40491558-40491759)
chr7 (395-526)||(41386818-41386949)
chr7 (363-465)||(45557377-45557479)
chr7 (421-526)||(5489875-5489980)
chr7 (374-481)||(38123648-38123755)
chr7 (379-503)||(27571836-27571960)
chr7 (394-521)||(597948-598074)
chr7 (411-501)||(30182315-30182404)
chr7 (379-441)||(39956263-39956325)
chr7 (459-521)||(45004976-45005038)
chr7 (374-503)||(22195838-22195967)
chr7 (445-502)||(36270955-36271012)
chr7 (302-337)||(15019356-15019391)
chr7 (404-502)||(31625398-31625494)
chr7 (363-450)||(40795960-40796047)
chr7 (430-500)||(28725090-28725160)
chr7 (445-502)||(40422767-40422825)
chr7 (363-520)||(41788275-41788430)
chr7 (672-713)||(18749198-18749239)
chr7 (394-507)||(24951103-24951216)
chr7 (379-456)||(35772279-35772356)
chr7 (374-435)||(42816450-42816511)
[»] chr2 (26 HSPs)
chr2 (374-498)||(16518758-16518881)
chr2 (365-503)||(33019129-33019267)
chr2 (415-502)||(2002718-2002805)
chr2 (365-502)||(22535973-22536110)
chr2 (378-496)||(42982523-42982643)
chr2 (377-503)||(10644577-10644703)
chr2 (362-501)||(33502223-33502349)
chr2 (348-486)||(42740968-42741105)
chr2 (459-521)||(680344-680406)
chr2 (396-505)||(31453355-31453464)
chr2 (378-474)||(5533017-5533113)
chr2 (365-481)||(43501121-43501235)
chr2 (394-497)||(44439230-44439337)
chr2 (410-470)||(17281416-17281476)
chr2 (362-426)||(44670858-44670922)
chr2 (420-499)||(30503187-30503266)
chr2 (404-442)||(31685981-31686019)
chr2 (374-456)||(32596012-32596094)
chr2 (363-476)||(4894128-4894241)
chr2 (365-474)||(13912790-13912899)
chr2 (445-521)||(36987164-36987241)
chr2 (365-505)||(11504035-11504174)
chr2 (394-503)||(37420197-37420308)
chr2 (731-790)||(42035513-42035571)
chr2 (413-498)||(10618962-10619047)
chr2 (650-691)||(35849470-35849511)
[»] chr6 (33 HSPs)
chr6 (363-501)||(5724601-5724739)
chr6 (376-500)||(4910885-4911009)
chr6 (394-501)||(26280581-26280688)
chr6 (404-520)||(6654102-6654218)
chr6 (366-502)||(16540082-16540218)
chr6 (377-505)||(1485131-1485259)
chr6 (365-501)||(3482022-3482158)
chr6 (365-526)||(25195339-25195498)
chr6 (408-507)||(7952725-7952824)
chr6 (668-790)||(33532430-33532552)
chr6 (363-521)||(34620842-34621000)
chr6 (363-521)||(34748279-34748437)
chr6 (374-526)||(7280441-7280593)
chr6 (365-482)||(25195845-25195960)
chr6 (394-518)||(765390-765512)
chr6 (377-497)||(852512-852632)
chr6 (382-454)||(17225875-17225947)
chr6 (417-493)||(30927027-30927103)
chr6 (421-521)||(35098487-35098587)
chr6 (379-508)||(2234484-2234614)
chr6 (374-508)||(8860473-8860607)
chr6 (376-496)||(882667-882787)
chr6 (376-483)||(31305831-31305939)
chr6 (458-521)||(2008568-2008631)
chr6 (365-476)||(6895923-6896034)
chr6 (649-712)||(34227377-34227440)
chr6 (374-500)||(434219-434345)
chr6 (386-456)||(2046601-2046671)
chr6 (469-519)||(2234291-2234341)
chr6 (671-713)||(19148507-19148549)
chr6 (446-500)||(35098228-35098282)
chr6 (363-428)||(2748043-2748107)
chr6 (658-687)||(18270553-18270582)
[»] chr5 (23 HSPs)
chr5 (386-494)||(9818717-9818826)
chr5 (365-500)||(42858085-42858220)
chr5 (406-476)||(22226250-22226320)
chr5 (368-476)||(18851058-18851166)
chr5 (378-476)||(6951291-6951389)
chr5 (376-521)||(34250338-34250480)
chr5 (374-476)||(38845444-38845547)
chr5 (394-500)||(42439619-42439726)
chr5 (394-503)||(36639911-36640020)
chr5 (404-456)||(370745-370797)
chr5 (649-713)||(31632190-31632254)
chr5 (393-456)||(28110439-28110502)
chr5 (362-481)||(39097242-39097361)
chr5 (404-470)||(35108246-35108312)
chr5 (394-474)||(15368376-15368456)
chr5 (398-481)||(22572410-22572493)
chr5 (394-497)||(31906239-31906342)
chr5 (378-521)||(32980500-32980642)
chr5 (462-501)||(43268467-43268506)
chr5 (445-497)||(3970453-3970506)
chr5 (394-435)||(10898763-10898804)
chr5 (396-497)||(14299310-14299411)
chr5 (375-476)||(28031157-28031257)
[»] chr3 (26 HSPs)
chr3 (365-497)||(25359547-25359679)
chr3 (364-470)||(31708211-31708317)
chr3 (397-518)||(32523345-32523467)
chr3 (446-503)||(7717375-7717432)
chr3 (393-503)||(35058335-35058446)
chr3 (394-456)||(4526153-4526215)
chr3 (399-501)||(44771670-44771772)
chr3 (376-499)||(35264395-35264518)
chr3 (365-464)||(52141221-52141320)
chr3 (302-474)||(31013021-31013189)
chr3 (380-502)||(36302158-36302280)
chr3 (440-521)||(1441429-1441510)
chr3 (445-502)||(41115415-41115472)
chr3 (376-502)||(5406881-5407005)
chr3 (383-497)||(37335025-37335139)
chr3 (394-503)||(52364025-52364134)
chr3 (404-456)||(4401418-4401470)
chr3 (378-474)||(31492770-31492864)
chr3 (376-492)||(40147834-40147950)
chr3 (362-454)||(41596119-41596211)
chr3 (436-474)||(26377445-26377483)
chr3 (413-467)||(41208269-41208323)
chr3 (412-502)||(54596793-54596883)
chr3 (665-790)||(5033331-5033456)
chr3 (472-521)||(7717453-7717502)
chr3 (405-498)||(44958619-44958712)
[»] scaffold0168 (1 HSPs)
scaffold0168 (366-503)||(31800-31940)
[»] scaffold0361 (1 HSPs)
scaffold0361 (363-502)||(14085-14223)
[»] scaffold0393 (1 HSPs)
scaffold0393 (459-502)||(12373-12417)
[»] scaffold0005 (1 HSPs)
scaffold0005 (387-482)||(220597-220694)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 374 - 521
Target Start/End: Original strand, 32818352 - 32818499
Alignment:
Q  374 tgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    ||||||||||||||||||  ||||||| | |||||||||||||||||||| |||| |||||| || |||| |||||||||||| |||||||||| |||||    
T  32818352 tgtgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaa 32818451  T
Q  474 tcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    ||| |||||||||||||||||||||||||| |||| ||| ||| ||||    
T  32818452 tcaattctggaggcaaaatcaattctactcgaaagaaaccaaatatgt 32818499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 364 - 521
Target Start/End: Complemental strand, 35065176 - 35065019
Alignment:
Q  364 taaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagct 463  Q
    ||||||| | ||||||||||||||||||  ||||||||| | ||  ||||||||||||||||||| |||||| || |||| ||||  |||||||||||||    
T  35065176 taaagtgatttgtgtttggatacattcatgtaaaagtgagtggagatataaatttgtgtgtaaaaatcaattctagaatcaaaagtcacaaatactagct 35065077  T
Q  464 tcaagtagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    ||||||| ||||| || | ||||||||||||||||||||| |||| ||| ||| ||||    
T  35065076 tcaagtaaaatcaattattgaggcaaaatcaattctactcgaaagcaaccaaaaatgt 35065019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 363 - 476
Target Start/End: Original strand, 8604593 - 8604706
Alignment:
Q  363 gtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagc 462  Q
    |||||||| | | ||||||||||||||||  ||||||||  || |||||||||||||||||| ||| |||||| || |||||||||||||||||  ||||    
T  8604593 gtaaagtgatttatgtttggatacattcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaattctagaatcgaaagctacaaatcttagc 8604692  T
Q  463 ttcaagtagaatca 476  Q
    ||||||||||||||    
T  8604693 ttcaagtagaatca 8604706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 395 - 503
Target Start/End: Complemental strand, 26617550 - 26617442
Alignment:
Q  395 aaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatca 494  Q
    |||| ||| ||||| ||||||||| | | ||||| ||||||||| |||| ||||||||| || ||||||||||||||||||| || ||||||||||||||    
T  26617550 aaaactgagttgaattataaatttatctataaaaatcaattttataatcaaaagctacagattctagcttcaagtagaatcatttttggaggcaaaatca 26617451  T
Q  495 attctactc 503  Q
    |||||||||    
T  26617450 attctactc 26617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 379 - 521
Target Start/End: Complemental strand, 9134706 - 9134566
Alignment:
Q  379 ttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagt 478  Q
    |||||||||||||  ||||||  | |||| ||||||||||||||| |||  |||||| ||||||| ||||||||||||  ||||||||||||| |||| |    
T  9134706 ttggatacattcatttaaaagcaaattgagctataaatttgtgtgaaaa--tcaattctaaaatcaaaagctacaaattttagcttcaagtaggatcaat 9134609  T
Q  479 tctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    |||||| | ||||||||||| |||| | |  ||||||||||||    
T  9134608 tctggaagtaaaatcaattccactcgataacaactaaacatgt 9134566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 404 - 502
Target Start/End: Original strand, 49138775 - 49138872
Alignment:
Q  404 ttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattctact 502  Q
    |||||||||||  |||||| ||||| ||||||||| |||| |||| ||||||| ||||||||||||||||| |||| ||||||||||||||||| ||||    
T  49138775 ttgaactataagcttgtgtataaaaatcaattttagaatcaaaagttacaaatcctagcttcaagtagaataagtt-tggaggcaaaatcaattttact 49138872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 376 - 502
Target Start/End: Original strand, 55927754 - 55927880
Alignment:
Q  376 tgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatc 475  Q
    ||||||||||||||||  |||||||||||||||| ||||||||| |||| |   |||||| || ||||  ||||||||| |  |||| |||||| |||||    
T  55927754 tgtttggatacattcatgtaaaagtgacttgaacaataaatttgagtgtgacgatcaattctagaatcagaagctacaatttttagcctcaagtggaatc 55927853  T
Q  476 agttctggaggcaaaatcaattctact 502  Q
    | ||||| |||||||||||||| ||||    
T  55927854 aattctgaaggcaaaatcaattatact 55927880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 393 - 502
Target Start/End: Original strand, 50061629 - 50061738
Alignment:
Q  393 ataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaat 492  Q
    ||||||| || |||||| ||||| || ||||| ||| |||| | || |||| ||| |||||||| ||| ||||||||||||||| || ||||||||||||    
T  50061629 ataaaagcgagttgaaccataaaattatgtgtgaaaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaattttggaggcaaaat 50061728  T
Q  493 caattctact 502  Q
    ||||||||||    
T  50061729 caattctact 50061738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 384 - 495
Target Start/End: Original strand, 11271530 - 11271641
Alignment:
Q  384 tacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagt-agaatcagttctg 482  Q
    |||||| |||||||||||| |||||| ||||| ||  ||| ||||||||  |||| | || |||||||||||| |||||||||||| ||||||| |||||    
T  11271530 tacatttacataaaagtgagttgaacaataaactta-gtgcaaaagtcatgtttagactcaaaagctacaaatcctagcttcaagttagaatcaattctg 11271628  T
Q  483 gaggcaaaatcaa 495  Q
    |||||||||||||    
T  11271629 gaggcaaaatcaa 11271641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 407 - 507
Target Start/End: Complemental strand, 30357582 - 30357482
Alignment:
Q  407 aactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattctactcaaa 506  Q
    |||||||||||||||||||||| |||||| || |||| ||||||||||||   ||||||||||||||||| ||||  ||  |||||||||| |||| |||    
T  30357582 aactataaatttgtgtgtaaaaatcaattatataatcaaaagctacaaatcacagcttcaagtagaatcaattctaaagataaaatcaattatactaaaa 30357483  T
Q  507 a 507  Q
    |    
T  30357482 a 30357482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 374 - 481
Target Start/End: Original strand, 21691194 - 21691301
Alignment:
Q  374 tgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    |||||||||||| |||||  ||||||||  ||||||||||||||||||||| ||| |||||| || || | ||||||||||||  ||| ||||||| |||    
T  21691194 tgtgtttggatatattcatgtaaaagtgtgttgaactataaatttgtgtgtgaaaatcaattctacaaccaaaagctacaaatcttagtttcaagttgaa 21691293  T
Q  474 tcagttct 481  Q
    ||| ||||    
T  21691294 tcaattct 21691301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 376 - 521
Target Start/End: Complemental strand, 25319149 - 25319003
Alignment:
Q  376 tgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaag-tcaattttaaaatcgaaagctacaaatactagcttcaagt-agaa 473  Q
    ||||| |||||||| || ||||||||| |||||| ||||||||  || |||||  |||  |||| | || |||||||||||| ||| |||||||| ||||    
T  25319149 tgtttcgatacatttacgtaaaagtgagttgaacaataaatttcagtataaaaaatcacatttagactc-aaagctacaaatcctaccttcaagttagaa 25319051  T
Q  474 tcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    ||| |||||||| ||||||||||||||||| | || ||| ||||||||    
T  25319050 tcaattctggagacaaaatcaattctactcgagagcaaccaaacatgt 25319003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 365 - 456
Target Start/End: Complemental strand, 45011986 - 45011895
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaat 456  Q
    |||||||| || ||||| ||||||||| |||||||||| |  || ||||||||||||||| ||| |||||| || |||| ||||||||||||    
T  45011986 aaagtggtttgggtttgaatacattcatataaaagtgagtaaaattataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaat 45011895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 374 - 500
Target Start/End: Original strand, 53713543 - 53713669
Alignment:
Q  374 tgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    |||||||||| |||||||  ||||||||| |||||||||| || | | |||  ||||||||| || |||| ||||||||||||  |||||||||||| ||    
T  53713543 tgtgtttggacacattcatgtaaaagtgagttgaactatatatatttatgtggaagtcaattatagaatcaaaagctacaaatcgtagcttcaagtaaaa 53713642  T
Q  474 tcagttctggaggcaaaatcaattcta 500  Q
    | | |||| ||  |||||| |||||||    
T  53713643 ttaattcttgaaacaaaattaattcta 53713669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 379 - 475
Target Start/End: Complemental strand, 16552053 - 16551959
Alignment:
Q  379 ttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatc 475  Q
    |||||||||||||  ||||||||| ||||||||||||||||||||  ||| |||||| || ||   ||| |||||||| ||||||||||| ||||||    
T  16552053 ttggatacattcatgtaaaagtgagttgaactataaatttgtgtg--aaaatcaattctagaactaaaaactacaaatcctagcttcaaggagaatc 16551959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 394 - 475
Target Start/End: Original strand, 52965856 - 52965937
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatc 475  Q
    ||||||||| ||||| ||||||||| ||||| | | ||||||||| |||| ||||||| ||||| || ||||||||||||||    
T  52965856 taaaagtgagttgaattataaatttatgtgttagaatcaattttagaatcaaaagctataaatagtaacttcaagtagaatc 52965937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 405 - 505
Target Start/End: Original strand, 20712827 - 20712927
Alignment:
Q  405 tgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattctactca 504  Q
    ||||||| ||| |||||||| ||| |||||| |  |||  ||| ||||||||  |||||||||||||||||  ||| |||||||||||||||| ||||||    
T  20712827 tgaactacaaaattgtgtgtgaaaatcaattcttcaataaaaaactacaaattttagcttcaagtagaatcgtttcgggaggcaaaatcaattttactca 20712926  T
Q  505 a 505  Q
    |    
T  20712927 a 20712927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 376 - 508
Target Start/End: Original strand, 33347154 - 33347286
Alignment:
Q  376 tgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatc 475  Q
    |||||| ||||| |||  ||||||||| |||||||||| ||||||||| |||| | |||| |  |||  |||  ||||||| ||| |||||||||||||     
T  33347154 tgtttgaatacaatcatgtaaaagtgaattgaactatatatttgtgtgcaaaaattaattatcgaataaaaaattacaaatcctaccttcaagtagaatt 33347253  T
Q  476 agttctggaggcaaaatcaattctactcaaaag 508  Q
    | |||| |||||||||| | || ||||||||||    
T  33347254 aattctagaggcaaaattacttatactcaaaag 33347286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 362 - 521
Target Start/End: Original strand, 33560540 - 33560700
Alignment:
Q  362 tgtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactag 461  Q
    |||||| |||| | ||||| |||||||  ||||| |||||| |||||| || ||| |  || ||||| ||| ||||| | || |||||||||||| ||||    
T  33560540 tgtaaattggtttatgtttagatacatatacatataagtgagttgaacaatgaatgtcagtttaaaaatcacttttagactcaaaagctacaaatcctag 33560639  T
Q  462 cttcaagt-agaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    |||   || ||||||| |||| ||||||||||||||||||||| | || ||| ||||||||    
T  33560640 ctttcggttagaatcaattctagaggcaaaatcaattctactcgagagcaaccaaacatgt 33560700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 363 - 526
Target Start/End: Original strand, 46344805 - 46344965
Alignment:
Q  363 gtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagc 462  Q
    |||||||| | | |||||||||||||| |  ||||||||| | ||||| ||||||||||| ||||| ||| ||  | |||| ||||||  |||| ||| |    
T  46344805 gtaaagtgatttttgtttggatacatt-atgtaaaagtgagtcgaactttaaatttgtgt-taaaaatcacttccagaatcaaaagctggaaattctaac 46344902  T
Q  463 ttcaagtagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgtaagaa 526  Q
    |||||||||||| | || ||||||||||||||||| ||||  |||| ||| |||||||| ||||    
T  46344903 ttcaagtagaataa-ttatggaggcaaaatcaattatacttgaaagcaaccaaacatgtcagaa 46344965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 394 - 500
Target Start/End: Complemental strand, 9064314 - 9064208
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatc 493  Q
    ||||||||| ||||||  |||| ||| |||| ||| |||||| || |||| ||| |||||||| |||| |||||||||||||| || ||| |||||| |     
T  9064314 taaaagtgagttgaaccgtaaacttgagtgtgaaaatcaattctagaatcaaaaactacaaattctagtttcaagtagaatcaattatggtggcaaattt 9064215  T
Q  494 aattcta 500  Q
    |||||||    
T  9064214 aattcta 9064208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 456
Target Start/End: Complemental strand, 20718716 - 20718638
Alignment:
Q  378 tttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaat 456  Q
    |||||||||||| |  ||||||| ||||||||||||| |||||||  |||| ||||||||| |||  ||||||||||||    
T  20718716 tttggatacatttatttaaaagtaacttgaactataattttgtgtagaaaaatcaattttataattaaaagctacaaat 20718638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 500
Target Start/End: Complemental strand, 22250325 - 22250203
Alignment:
Q  378 tttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcag 477  Q
    ||||||||||||||  ||||||||| | |||| ||||||||| || | |||  |||||| | |||| |||||| ||| | || ||||||||||||| ||     
T  22250325 tttggatacattcatgtaaaagtgaatcgaacaataaatttgagtattaaaagcaatttcagaatcaaaagcttcaatttcttgcttcaagtagaaccaa 22250226  T
Q  478 ttctggaggcaaaatcaattcta 500  Q
    | || || |||||||||||||||    
T  22250225 tcctagatgcaaaatcaattcta 22250203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 445 - 499
Target Start/End: Original strand, 29779107 - 29779161
Alignment:
Q  445 aaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattct 499  Q
    |||||||||||| ||||||||||||||||||| ||||  | ||||||||||||||    
T  29779107 aaagctacaaattctagcttcaagtagaatcaattctacaagcaaaatcaattct 29779161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 481
Target Start/End: Complemental strand, 1616503 - 1616387
Alignment:
Q  364 taaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagct 463  Q
    ||||||||| |||||||| |||||||||  ||||| ||| ||||||| ||||  |||||||   | |||||| || |||| ||||||||||||  |||||    
T  1616503 taaagtggtttgtgtttgaatacattcatgtaaaaatgagttgaactttaaacatgtgtgtgggaatcaattctagaatcaaaagctacaaattgtagct 1616404  T
Q  464 tcaagtagaatcagttct 481  Q
    | ||||||||||| ||||    
T  1616403 t-aagtagaatcaattct 1616387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 507
Target Start/End: Complemental strand, 22683978 - 22683833
Alignment:
Q  363 gtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagc 462  Q
    ||||| |||| | |||||||| ||||| |  |||||| || |||||| ||||||||   ||||||| |||  |||| | || ||||||||| ||  ||||    
T  22683978 gtaaaatggtttatgtttggacacatttatgtaaaagcgagttgaacaataaatttcaatgtaaaaatcacgtttagactcaaaagctacagatcatagc 22683879  T
Q  463 ttcaagt-agaatcagttctggaggcaaaatcaattctactcaaaa 507  Q
    ||||||| | ||| | |||||||||||||||||||| |||||||||    
T  22683878 ttcaagttataattaattctggaggcaaaatcaattttactcaaaa 22683833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 404 - 473
Target Start/End: Complemental strand, 53655243 - 53655174
Alignment:
Q  404 ttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    ||||||||||||||||||||| ||| |  ||||||||||| ||| ||  ||||| |||||||||||||||    
T  53655243 ttgaactataaatttgtgtgttaaaattgattttaaaatccaaatctttaaataatagcttcaagtagaa 53655174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 382 - 497
Target Start/End: Complemental strand, 25927401 - 25927288
Alignment:
Q  382 gatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttct 481  Q
    ||||||||||| ||||||||| |||| | |||||||| |||  |||| |||||| | |||||  |||||||||||  || || ||| |||||||| || |    
T  25927401 gatacattcacgtaaaagtgaattgagccataaatttatgt--aaaaatcaattctgaaatcataagctacaaatcttaactccaaatagaatcaattat 25927304  T
Q  482 ggaggcaaaatcaatt 497  Q
    ||||||| ||||||||    
T  25927303 ggaggcataatcaatt 25927288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 671 - 715
Target Start/End: Complemental strand, 34222394 - 34222350
Alignment:
Q  671 gaaaatagcagtttgttcaaactttgctacacaacagtgctattg 715  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||    
T  34222394 gaaaatagcagtttgttcaaattctgctacataacagtgctattg 34222350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 521
Target Start/End: Complemental strand, 2635182 - 2635119
Alignment:
Q  458 ctagcttcaagtagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    ||||||||||| | ||||| ||||||||||||||||| ||||||| ||||| ||  ||||||||    
T  2635182 ctagcttcaagcataatcaattctggaggcaaaatcagttctacttaaaagcaatcaaacatgt 2635119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 469
Target Start/End: Complemental strand, 10185293 - 10185202
Alignment:
Q  378 tttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagt 469  Q
    |||||||||||| |  ||||||||| || ||| ||||||||| |||||||  ||||||||| |||| |||||| ||| | ||| ||||||||    
T  10185293 tttggatacattaatgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaatcaaaagcttcaatttctaccttcaagt 10185202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 474
Target Start/End: Original strand, 44278954 - 44279049
Alignment:
Q  379 ttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaat 474  Q
    |||||||||||||  ||||| ||| ||||| || |||||| ||||| | | |||||||||||||  |||| |||| ||| ||| ||||||||||||    
T  44278954 ttggatacattcatgtaaaaatgatttgaattaaaaatttatgtgttagaatcaattttaaaataaaaagatacatatagtagtttcaagtagaat 44279049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 387 - 482
Target Start/End: Complemental strand, 14596781 - 14596684
Alignment:
Q  387 attcacataaaagtgacttgaactataaa--tttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctg 482  Q
    ||||| |||||||||| ||||||||||||  ||||| | ||||| |||||| || |||| ||| || ||||   |||||||||||||||||| |||||    
T  14596781 attcatataaaagtgaattgaactataaatttttgtatctaaaaatcaattctagaatcaaaaactgcaaaacatagcttcaagtagaatcaattctg 14596684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 649 - 790
Target Start/End: Original strand, 4145174 - 4145314
Alignment:
Q  649 gtgttgtaaattgcggattgtggaaaatagcagtttgttcaaactttgctacacaacagtgctattgagctactataactgctatttgataagattttgt 748  Q
    ||||||| ||||||||||||| || |||||   | |||||||| |  |||||||||||||| ||| |  |||||| | ||| ||| ||| || |||||||    
T  4145174 gtgttgtcaattgcggattgtagagaatagtgatatgttcaaaatccgctacacaacagtgttatagcactactaaagctg-tatctgacaacattttgt 4145272  T
Q  749 actgaaatgggtatcgtggaacaatagtgatttgttcaaatt 790  Q
    ||||||  | |||| |||||||||||   |||||||||||||    
T  4145273 actgaatagcgtatggtggaacaataacaatttgttcaaatt 4145314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 404 - 521
Target Start/End: Complemental strand, 30473007 - 30472890
Alignment:
Q  404 ttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattctactc 503  Q
    ||||||||||||| | | ||| ||| |||||| ||||||| ||| |||||||| ||| ||| ||||| ||||| || || ||  ||||| |||||||||     
T  30473007 ttgaactataaatatatatgtgaaaatcaattctaaaatcaaaaactacaaattctaacttgaagtaaaatcaattttgaagataaaattaattctactt 30472908  T
Q  504 aaaaggaactaaacatgt 521  Q
    || || || |||||||||    
T  30472907 aagagcaagtaaacatgt 30472890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 365 - 502
Target Start/End: Complemental strand, 39386745 - 39386608
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagctt 464  Q
    |||||||| | |||||  ||| |||||  ||||||||| ||||||| ||||| ||||||| ||| |||||| || |||  || | || ||||  ||||||    
T  39386745 aaagtggtttttgtttaaatatattcatgtaaaagtgagttgaactttaaatatgtgtgtgaaaatcaattatagaattaaatgttataaattttagctt 39386646  T
Q  465 caagtagaatcagttctggaggcaaaatcaattctact 502  Q
     ||||||||||| || | ||| || |||||||||||||    
T  39386645 taagtagaatcaattttagagacagaatcaattctact 39386608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 404 - 465
Target Start/End: Original strand, 42971914 - 42971975
Alignment:
Q  404 ttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttc 465  Q
    ||||||||||||||||| ||||||| |||||| ||||| | ||||||| ||||  |||||||    
T  42971914 ttgaactataaatttgtatgtaaaaatcaattctaaaagcaaaagctataaattatagcttc 42971975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 45694744 - 45694667
Alignment:
Q  348 gagtgaattgattgtgtaaa-gtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgt 424  Q
    ||||||||||||| |||||| |||   ||||||||||||||||||  ||||| ||| || |||||||||| |||||||    
T  45694744 gagtgaattgattctgtaaacgtgagttgtgtttggatacattcatgtaaaaatgagttcaactataaatgtgtgtgt 45694667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 1e-37; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 365 - 521
Target Start/End: Complemental strand, 32928004 - 32927848
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagctt 464  Q
    |||||| | ||||||||||||||||||  ||||||||| ||||||||||||||||||||||||| | |||| || |||| |||||||||||| |||||||    
T  32928004 aaagtgatttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcctagctt 32927905  T
Q  465 caagtagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    ||||||||||||  | | ||||||||||||||||||||  |||| ||| ||||||||    
T  32927904 caagtagaatcaactattgaggcaaaatcaattctactggaaagcaaccaaacatgt 32927848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 374 - 500
Target Start/End: Original strand, 4662885 - 4663011
Alignment:
Q  374 tgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    |||||||||||||||||||  ||||| || |||||||||| |||||||||||||| |||||| || || | |||||||||||| ||||||||||||||||    
T  4662885 tgtgtttggatacattcacggaaaagcgagttgaactatacatttgtgtgtaaaaatcaattctagaaacaaaagctacaaatcctagcttcaagtagaa 4662984  T
Q  474 tcagttctggaggcaaaatcaattcta 500  Q
    | | ||| ||| |||||||||||||||    
T  4662985 taaattccggatgcaaaatcaattcta 4663011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 365 - 503
Target Start/End: Complemental strand, 37684517 - 37684379
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagctt 464  Q
    |||||| | |||||||||||||||| |  ||||||||| ||||| ||||||||| ||  | ||| ||||||||| |||| ||||| |||||| ||| |||    
T  37684517 aaagtgatttgtgtttggatacatttatgtaaaagtgagttgaattataaatttttgcattaaaatcaattttagaatcaaaagccacaaatcctaactt 37684418  T
Q  465 caagtagaatcagttctggaggcaaaatcaattctactc 503  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  37684417 caagtagaatcaattctggagacaaaatcaattctactc 37684379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 374 - 503
Target Start/End: Original strand, 16972046 - 16972175
Alignment:
Q  374 tgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    |||||||| |||||||||  ||||||||| |||||| |||||||||||| ||||| |||||| ||||||  ||| |||||||| |||||||||| || ||    
T  16972046 tgtgtttgaatacattcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaattctaaaattaaaaactacaaattctagcttcaaatacaa 16972145  T
Q  474 tcagttctggaggcaaaatcaattctactc 503  Q
    |||  |||| ||||||||||||||||||||    
T  16972146 tcaactctgaaggcaaaatcaattctactc 16972175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 649 - 800
Target Start/End: Original strand, 10354742 - 10354892
Alignment:
Q  649 gtgttgtaaattgcggattgtggaaaatagcagtttgttcaaactttgctacacaacagtgctattgagctactataactgctatttgataagattttgt 748  Q
    ||||||| ||| |||||| | |||||||||  ||||||||||| |   |||| ||| |||||||| ||||  ||||||||| ||||| |||| |||||||    
T  10354742 gtgttgtcaatggcggatcgcggaaaatagatgtttgttcaaattccactacgcaatagtgctatagagccgctataactgttatttcataatattttgt 10354841  T
Q  749 actgaaatgggtatcgtggaacaatagtgatttgttcaaattgcattatgca 800  Q
     || |||| |||||||||||||||| |||||||||||||||| |||||||||    
T  10354842 gct-aaataggtatcgtggaacaatggtgatttgttcaaattccattatgca 10354892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 374 - 502
Target Start/End: Original strand, 26100128 - 26100257
Alignment:
Q  374 tgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    ||||||||||| |||| |  ||||||||| |||||| |||||||||||||||||| |||||| || |||| |||||||||||| |||||||||| |||||    
T  26100128 tgtgtttggatgcatttatgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaa 26100227  T
Q  474 tcagttctggag-gcaaaatcaattctact 502  Q
     || |||| |||  |||| |||||||||||    
T  26100228 ccaattctagagaccaaagtcaattctact 26100257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 364 - 476
Target Start/End: Complemental strand, 35495103 - 35494991
Alignment:
Q  364 taaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagct 463  Q
    ||||||| | |||||||||||| |||||  ||||||| | |||||||||| ||||||||||||||  ||||| || |||| |||||||||||| ||||||    
T  35495103 taaagtgatttgtgtttggatatattcatgtaaaagtaagttgaactatagatttgtgtgtaaaaaacaattctagaatcaaaagctacaaatcctagct 35495004  T
Q  464 tcaagtagaatca 476  Q
    ||| |||||||||    
T  35495003 tcatgtagaatca 35494991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 393 - 502
Target Start/End: Original strand, 44141051 - 44141160
Alignment:
Q  393 ataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaat 492  Q
    ||||||| || |||||||||||| || ||||| ||| |||| | || |||| ||| |||||||| ||| ||||||||||||||| || ||||||||||||    
T  44141051 ataaaagcgagttgaactataaaattatgtgtgaaaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaattttggaggcaaaat 44141150  T
Q  493 caattctact 502  Q
    ||||||||||    
T  44141151 caattctact 44141160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 376 - 500
Target Start/End: Complemental strand, 35495361 - 35495237
Alignment:
Q  376 tgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatc 475  Q
    |||||||||||||||| |||||||||| |||||| ||||||||| || ||||| |||||| || ||||  || ||| | |   |||||||||||||||||    
T  35495361 tgtttggatacattcaaataaaagtgatttgaacaataaatttgagtataaaaatcaattatagaatcagaatctagatagtgtagcttcaagtagaatc 35495262  T
Q  476 agttctggaggcaaaatcaattcta 500  Q
    | |||| |||||||||| |||||||    
T  35495261 aattctagaggcaaaattaattcta 35495237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 394 - 485
Target Start/End: Original strand, 13384656 - 13384747
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggag 485  Q
    ||||||||| ||||||||||||||||||||| ||| |||||| || |||| ||||||||||||  ||||||||| |||||||| || |||||    
T  13384656 taaaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaatcaattttggag 13384747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 365 - 500
Target Start/End: Complemental strand, 32101185 - 32101050
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagctt 464  Q
    |||||| | ||||| |||||||||| |  ||||||||| ||||||||||||||||| | | ||| | |||||||||||  ||| |||||||| ||| |||    
T  32101185 aaagtgatttgtgtgtggatacatttatgtaaaagtgagttgaactataaatttgtatatgaaaattaattttaaaattaaaaactacaaattctaactt 32101086  T
Q  465 caagtagaatcagttctggaggcaaaatcaattcta 500  Q
     ||||||||| ||||||| || || |||||||||||    
T  32101085 taagtagaattagttctgaagacataatcaattcta 32101050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 394 - 503
Target Start/End: Complemental strand, 38868581 - 38868472
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatc 493  Q
    ||||| ||| ||||||||||||||||||||| ||| |||||| || || | ||||||||||||  |||||||||||||||||| || | ||||||  |||    
T  38868581 taaaattgagttgaactataaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaatcaattttagaggcatcatc 38868482  T
Q  494 aattctactc 503  Q
    |||| |||||    
T  38868481 aattttactc 38868472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 404 - 481
Target Start/End: Original strand, 15677827 - 15677905
Alignment:
Q  404 ttgaactataaatttgtgtgtaaaag-tcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttct 481  Q
    |||||||||||||||||||||||||  |||||| || |||| ||||||| |||| ||||||||||||||||||| ||||    
T  15677827 ttgaactataaatttgtgtgtaaaaaatcaattctataatcaaaagctataaatcctagcttcaagtagaatcaattct 15677905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 378 - 456
Target Start/End: Complemental strand, 32736561 - 32736483
Alignment:
Q  378 tttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaat 456  Q
    |||| |||||||||  ||||||||| ||||||||||||||||||||||||| | |||||||||||  ||| ||||||||    
T  32736561 tttgaatacattcatgtaaaagtgaattgaactataaatttgtgtgtaaaaattaattttaaaataaaaaactacaaat 32736483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 363 - 521
Target Start/End: Complemental strand, 7533911 - 7533753
Alignment:
Q  363 gtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagc 462  Q
    |||||||| ||||||||||| |||||||| |||||||||| || || ||||| || || ||||||| ||||||||| |||| ||||||| |||   || |    
T  7533911 gtaaagtgatctgtgtttgggtacattcatataaaagtgagtt-aattataagttcgtatgtaaaaatcaattttagaatcaaaagctagaaactttatc 7533813  T
Q  463 ttcaagtagaatcagtt-ctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    || |||||||| || || |  ||| ||||||||||||||||  |||| ||| ||||||||    
T  7533812 ttaaagtagaaacaattccacgagacaaaatcaattctacttgaaagcaaccaaacatgt 7533753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 374 - 476
Target Start/End: Original strand, 38335843 - 38335945
Alignment:
Q  374 tgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    |||||| |||||||||||  ||||||||| ||  | |||||||||||| |||||| |||||| ||||||| ||||| ||||||  ||||||||| | |||    
T  38335843 tgtgttcggatacattcatgtaaaagtgagttagaatataaatttgtgcgtaaaaatcaattctaaaatcaaaagcaacaaatcttagcttcaactggaa 38335942  T
Q  474 tca 476  Q
    |||    
T  38335943 tca 38335945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 376 - 481
Target Start/End: Original strand, 32994226 - 32994331
Alignment:
Q  376 tgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatc 475  Q
    ||||||||  ||||||  ||||||| | ||| ||||||||||||||| ||||| |||||| || | || ||||||| ||||  |||||||||||||||||    
T  32994226 tgtttggactcattcatgtaaaagtcatttgcactataaatttgtgtataaaaatcaattctagactcaaaagctagaaatcatagcttcaagtagaatc 32994325  T
Q  476 agttct 481  Q
    | ||||    
T  32994326 aattct 32994331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 459 - 521
Target Start/End: Complemental strand, 42455930 - 42455868
Alignment:
Q  459 tagcttcaagtagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    |||| ||||||||||||| || |||||||| ||||||| ||||||||||| ||| ||||||||    
T  42455930 tagcatcaagtagaatcaattatggaggcagaatcaatcctactcaaaagcaaccaaacatgt 42455868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 445 - 520
Target Start/End: Original strand, 11791786 - 11791862
Alignment:
Q  445 aaagctacaaatactagcttcaag-tagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatg 520  Q
    |||||||||||| ||||||| ||| ||||||||||| |||||||||| |||||| || ||||| | ||| |||||||    
T  11791786 aaagctacaaatcctagcttgaaggtagaatcagttatggaggcaaattcaattatattcaaaggcaaccaaacatg 11791862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 650 - 790
Target Start/End: Complemental strand, 21227065 - 21226925
Alignment:
Q  650 tgttgtaaattgcggattgtggaaaatagcagtttgttcaaactttgctacacaacagtgctattgagctactataactgctatttgataagattttgta 749  Q
    |||||| |||||||||| | |||||||||| | ||  ||||| | ||||   |||||||| ||| | ||||||||| | ||||||||| || ||||||||    
T  21227065 tgttgtcaattgcggatagcggaaaatagcgggtttctcaaattctgctttgcaacagtgatatagcgctactatagcagctatttgacaacattttgta 21226966  T
Q  750 ctgaaatgggtatcgtggaacaatagtgatttgttcaaatt 790  Q
    |||||  | |||| | ||||||||||   ||||||||||||    
T  21226965 ctgaatagcgtatggaggaacaatagctttttgttcaaatt 21226925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 476
Target Start/End: Complemental strand, 30098991 - 30098911
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatca 476  Q
    ||||||||| || |||||||||||| |||  |||| | |||| || ||||||||||||||||| |||||||||| || |||||    
T  30098991 taaaagtgagttaaactataaatttttgt--aaaaattaattctagaatcgaaagctacaaattctagcttcaaataaaatca 30098911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 364 - 414
Target Start/End: Original strand, 9461510 - 9461560
Alignment:
Q  364 taaagtggtctgtgtttggatacattcacataaaagtgacttgaactataa 414  Q
    ||||||| | |||||||||||||||||| |||||||||| ||||| |||||    
T  9461510 taaagtgatttgtgtttggatacattcatataaaagtgagttgaattataa 9461560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 430 - 508
Target Start/End: Original strand, 11572496 - 11572574
Alignment:
Q  430 tcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattctactcaaaag 508  Q
    ||||||||| |||| ||| ||||||||  |||||||||||| ||||| || || | | ||||||||||||||| |||||    
T  11572496 tcaattttataatcaaaatctacaaattttagcttcaagtataatcaattatgtaagtaaaatcaattctacttaaaag 11572574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 2206460 - 2206497
Alignment:
Q  302 attgattttgagtgaattaattacataaaattgatttt 339  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  2206460 attgatttagagtgaattaattatataaaattgatttt 2206497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 422 - 499
Target Start/End: Complemental strand, 10368050 - 10367973
Alignment:
Q  422 tgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattct 499  Q
    ||||||| | |||| || |||| |||||| ||||| ||||| |||||||||| || || ||||||| |||||||||||    
T  10368050 tgtaaaaatgaattctagaatcaaaagctgcaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaattct 10367973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 469 - 502
Target Start/End: Complemental strand, 40881107 - 40881074
Alignment:
Q  469 tagaatcagttctggaggcaaaatcaattctact 502  Q
    |||||||| |||||||||||||||||||||||||    
T  40881107 tagaatcatttctggaggcaaaatcaattctact 40881074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 5e-37; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 643 - 790
Target Start/End: Complemental strand, 11049200 - 11049053
Alignment:
Q  643 atgagtgtgttgtaaattgcggattgtggaaaatagcagtttgttcaaactttgctacacaacagtgctattgagctactataactgctatttgataaga 742  Q
    |||||||||||| |||||| |||||||||||||||||   ||||||||| ||||||||| ||||||||||||| ||||||||| ||||||||||||||||    
T  11049200 atgagtgtgttggaaattgtggattgtggaaaatagcgacttgttcaaattttgctacataacagtgctattgtgctactatagctgctatttgataaga 11049101  T
Q  743 ttttgtactgaaatgggtatcgtggaacaatagtgatttgttcaaatt 790  Q
    |||||||||  |  | |||||||||| || ||| ||||||||||||||    
T  11049100 ttttgtactagatagtgtatcgtggagcagtagcgatttgttcaaatt 11049053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 380 - 475
Target Start/End: Complemental strand, 11049347 - 11049252
Alignment:
Q  380 tggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatc 475  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||||||||||||    
T  11049347 tggatacattcacgtaaaagtgacttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaatc 11049252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 374 - 503
Target Start/End: Original strand, 28083870 - 28083999
Alignment:
Q  374 tgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    |||||||||||| |||||  |||||||||  ||||||  |||||||||||||||| | |||| || |||| |||||||||||| ||||||||||||||||    
T  28083870 tgtgtttggatatattcatgtaaaagtgagctgaacttgaaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagtagaa 28083969  T
Q  474 tcagttctggaggcaaaatcaattctactc 503  Q
    ||| ||  | || |||||||||||||||||    
T  28083970 tcaattacgaagacaaaatcaattctactc 28083999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 374 - 474
Target Start/End: Complemental strand, 1514446 - 1514346
Alignment:
Q  374 tgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    ||||||||||||||||||  ||||| ||| |||||| |||||||||||||||||| |||||| || |||  |||||||||||| ||||||||||||||||    
T  1514446 tgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttcaagtagaa 1514347  T
Q  474 t 474  Q
    |    
T  1514346 t 1514346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 374 - 477
Target Start/End: Complemental strand, 30557605 - 30557504
Alignment:
Q  374 tgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||  ||| |||||| || |||| ||| |||||||| |||||||||| |||||    
T  30557605 tgtgtttggatacattcatataaaagtgagttgaactataaatttgtgtg--aaaatcaattctagaatcaaaaactacaaatcctagcttcaactagaa 30557508  T
Q  474 tcag 477  Q
    ||||    
T  30557507 tcag 30557504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 363 - 470
Target Start/End: Complemental strand, 7524227 - 7524120
Alignment:
Q  363 gtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagc 462  Q
    |||||||| | |||||||||| ||||| |  ||||||||| ||||||||||||||||||||||||| |||||| || |||| |||||||||||| ||| |    
T  7524227 gtaaagtgatttgtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaattctataatcaaaagctacaaatcctaac 7524128  T
Q  463 ttcaagta 470  Q
    ||||||||    
T  7524127 ttcaagta 7524120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 11049758 - 11049695
Alignment:
Q  9 ctcaactctatgctaaactgaaattcgatatggatgaagataattcttcagttgacgcggttcg 72  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11049758 ctcaactctacgctaaactgaaattcgaaatggatgaagataattcttcagttgacgcggttcg 11049695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 394 - 502
Target Start/End: Complemental strand, 6021887 - 6021779
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatc 493  Q
    ||||||||| |||||| ||||| ||| |||||||| || ||| || |||| ||||||||| || ||||||||||||||||||  |||| |||||||||||    
T  6021887 taaaagtgagttgaaccataaacttgagtgtaaaaatctattatagaatcaaaagctacatatcctagcttcaagtagaatcgattctagaggcaaaatc 6021788  T
Q  494 aattctact 502  Q
    |||||||||    
T  6021787 aattctact 6021779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 11049621 - 11049541
Alignment:
Q  147 actagtgaagaaaatgatggaaaattgaagtgtgaaattttgtactctattgttaggagaatagttttgttaagatagata 227  Q
    |||||||||||||||| |||||| |||||||||||||||||||| | |||||||||||||| |||||| ||||| ||||||    
T  11049621 actagtgaagaaaatggtggaaatttgaagtgtgaaattttgtaatgtattgttaggagaagagttttattaaggtagata 11049541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 363 - 497
Target Start/End: Original strand, 10324909 - 10325043
Alignment:
Q  363 gtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagc 462  Q
    |||||||| | ||||| |||||||||| |  ||||||||| |  ||| ||||||||| |||||||| |||||| || |||| |||||||||| | ||| |    
T  10324909 gtaaagtgatatgtgtatggatacattaatgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaatcaaaagctacaatttctatc 10325008  T
Q  463 ttcaagtagaatcagttctggaggcaaaatcaatt 497  Q
    |||||||||| ||| |||| |||||||||| ||||    
T  10325009 ttcaagtagactcaattctagaggcaaaattaatt 10325043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 376 - 476
Target Start/End: Complemental strand, 3016263 - 3016163
Alignment:
Q  376 tgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatc 475  Q
    ||||||||||||||||  ||||||||| ||||||  ||||||| ||||||||  |||||| || |||| |||||||||||| |||  |||||||||||||    
T  3016263 tgtttggatacattcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaatcaaaagctacaaattctaagttcaagtagaatc 3016164  T
Q  476 a 476  Q
    |    
T  3016163 a 3016163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 394 - 502
Target Start/End: Original strand, 7790644 - 7790752
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatc 493  Q
    ||||||||| |||||| |||||||||||||||||| |||||| || |||| ||| ||||||||  || ||||||||||||||| ||||  || ||| |||    
T  7790644 taaaagtgagttgaacaataaatttgtgtgtaaaaatcaattatagaatctaaatctacaaatcataacttcaagtagaatcaattctaaagacaatatc 7790743  T
Q  494 aattctact 502  Q
    |||| ||||    
T  7790744 aattatact 7790752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 394 - 478
Target Start/End: Original strand, 30850401 - 30850485
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagt 478  Q
    ||||||||| ||||||||||||||||| ||| ||| |||||| ||||||  ||| |||||||| |||| ||||||||||||||||    
T  30850401 taaaagtgagttgaactataaatttgtatgttaaaatcaattctaaaattaaaaactacaaatcctagtttcaagtagaatcagt 30850485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 378 - 505
Target Start/End: Complemental strand, 3416179 - 3416052
Alignment:
Q  378 tttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcag 477  Q
    ||||||||||| || |||||| ||| || |||||||||||||||||||||| |||||| ||||||  ||| ||||||||  || ||| ||||| |||||     
T  3416179 tttggatacatccatataaaattgagttaaactataaatttgtgtgtaaaaatcaattctaaaataaaaaactacaaatcttaactttaagtataatcaa 3416080  T
Q  478 ttctggaggcaaaatcaattctactcaa 505  Q
    || | || ||  ||||||||||||||||    
T  3416079 ttttagatgcgtaatcaattctactcaa 3416052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 394 - 473
Target Start/End: Original strand, 28287338 - 28287417
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    ||||||| | |||||| ||||||||| |||| ||| |||||| ||||||| |||||||||||| || |||||||||||||    
T  28287338 taaaagttagttgaacaataaatttgagtgttaaaatcaattctaaaatcaaaagctacaaatccttgcttcaagtagaa 28287417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 421 - 520
Target Start/End: Original strand, 47892417 - 47892516
Alignment:
Q  421 gtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatg 520  Q
    |||| ||| |||||| || |||| |||||| ||| | ||||||| |||||||||||||||| |  | ||||||||||||||||||||| ||| |||||||    
T  47892417 gtgttaaaatcaattctagaatcaaaagcttcaatttctagctttaagtagaatcagttctaggtgaaaaatcaattctactcaaaagcaaccaaacatg 47892516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 394 - 503
Target Start/End: Original strand, 47321909 - 47322017
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatc 493  Q
    ||||||||| ||||||||||||||||||| | ||| |||||| || |||  ||| || ||||| ||||||||||||| ||||| || | || ||| ||||    
T  47321909 taaaagtgaattgaactataaatttgtgtatgaaaatcaattctagaat-taaaactgcaaattctagcttcaagtataatcaattatagaagcagaatc 47322007  T
Q  494 aattctactc 503  Q
    ||||||||||    
T  47322008 aattctactc 47322017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 382 - 507
Target Start/End: Original strand, 50569633 - 50569758
Alignment:
Q  382 gatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttct 481  Q
    |||||||||| |||||| ||  ||||||||||||||||| ||| ||| |||||| || | || |||| |||| || |||| |||||| || || | || |    
T  50569633 gatacattcaaataaaactggattgaactataaatttgtttgtgaaattcaattatagattcaaaagttacagatcctagtttcaagcagcattaatttt 50569732  T
Q  482 ggaggcaaaatcaattctactcaaaa 507  Q
     |||| ||||||||||||||||||||    
T  50569733 tgaggtaaaatcaattctactcaaaa 50569758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 365 - 503
Target Start/End: Original strand, 2099660 - 2099797
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacat-aaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagct 463  Q
    |||||| | |||||||||||||||||| || |||| ||| |||| |||||||||| ||||| ||| |||||| || || | ||| ||||||||   ||||    
T  2099660 aaagtgatttgtgtttggatacattcatataaaaaatgagttgagctataaatttatgtgtgaaaatcaattctataaccaaaatctacaaatctcagct 2099759  T
Q  464 tcaagtagaatcagttctggaggcaaaatcaattctactc 503  Q
    |||| || ||||| ||||||||  | ||||||||||||||    
T  2099760 tcaattacaatcaattctggag--acaatcaattctactc 2099797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 462 - 521
Target Start/End: Complemental strand, 24587924 - 24587865
Alignment:
Q  462 cttcaagtagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    |||||||||||||||||||||| | |||| |||||||||||||| || ||| ||||||||    
T  24587924 cttcaagtagaatcagttctggcgtcaaagtcaattctactcaagagcaaccaaacatgt 24587865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 376 - 490
Target Start/End: Original strand, 48548998 - 48549110
Alignment:
Q  376 tgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatc 475  Q
    ||||| |||||||| |  ||||||||| |||||| ||||||  | || ||||| |||||| || ||||  ||||||||| | ||||||||||||||||||    
T  48548998 tgttttgatacatttatgtaaaagtgagttgaacaataaat--gagtttaaaaatcaattctagaatcagaagctacaatttctagcttcaagtagaatc 48549095  T
Q  476 agttctggaggcaaa 490  Q
    | || ||||||||||    
T  48549096 aattttggaggcaaa 48549110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 376 - 474
Target Start/End: Complemental strand, 34915167 - 34915069
Alignment:
Q  376 tgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaat 474  Q
    |||||| |||||||||  ||||||||| ||||| |||||| | |||||| | | |||||| || |||| ||||||||||| | ||||||||| ||||||    
T  34915167 tgtttgaatacattcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaatcaaaagctacaaagaatagcttcaactagaat 34915069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 521
Target Start/End: Complemental strand, 646185 - 646136
Alignment:
Q  472 aatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    ||||| ||||||||||||||||||||||||||||||  ||| ||||||||    
T  646185 aatcaattctggaggcaaaatcaattctactcaaaaacaaccaaacatgt 646136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 442
Target Start/End: Original strand, 6283221 - 6283298
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaat 442  Q
    |||||| | |||||||||||||||||| | ||||  || || |||||||||||||||||||||| | |||| ||||||    
T  6283221 aaagtgatttgtgtttggatacattcataaaaaaacgaattaaactataaatttgtgtgtaaaaataaattctaaaat 6283298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 302 - 473
Target Start/End: Original strand, 32369945 - 32370112
Alignment:
Q  302 attgattttgagtgaattaattacataaaattgattttgactataagagtgaattgattgtgtaaagtggtctgtgtttggatacattcacataaaagtg 401  Q
    |||||||||||||||||| |||   || |||||||||||||||  | | || ||||||| |  |||||| | ||||||||||||||||||  ||||||      
T  32369945 attgattttgagtgaattgattgtgtagaattgattttgacta--ataatggattgattat--aaagtgatttgtgtttggatacattcatgtaaaagca 32370040  T
Q  402 acttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    | || || |||||||||||||||||||   |||| || |||  |||  ||||||| ||| ||||||||||||    
T  32370041 agttcaattataaatttgtgtgtaaaaaataattctagaataaaaaattacaaattctaacttcaagtagaa 32370112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 474
Target Start/End: Original strand, 40662993 - 40663061
Alignment:
Q  404 ttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaat 474  Q
    ||||| ||||||||||||||| ||  |||||| |  |||| |||||||||||||||||||| |||||||||    
T  40662993 ttgaattataaatttgtgtgttaa--tcaattcttgaatcaaaagctacaaatactagctttaagtagaat 40663061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 448 - 521
Target Start/End: Complemental strand, 12655274 - 12655200
Alignment:
Q  448 gctacaaatactagcttcaagt-agaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    ||||||||| |||||||||||| ||||| | |||| |||||||| || | ||||||| |||| ||||||||||||    
T  12655274 gctacaaattctagcttcaagttagaattaattctagaggcaaagtcgaatctactccaaagcaactaaacatgt 12655200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 384 - 497
Target Start/End: Original strand, 20026156 - 20026270
Alignment:
Q  384 tacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctgg 483  Q
    |||||| |||||||||||| |||||| ||||||||| ||||  || |||||| || | |  ||||||  || | ||||||||||||||||||| || |||    
T  20026156 tacatttacataaaagtgaattgaacaataaatttgagtgttcaaatcaattctagagttaaaagcttgaatttctagcttcaagtagaatcaattgtgg 20026255  T
Q  484 -aggcaaaatcaatt 497  Q
     || |||||||||||    
T  20026256 aagtcaaaatcaatt 20026270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 383 - 476
Target Start/End: Complemental strand, 35961462 - 35961371
Alignment:
Q  383 atacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatca 476  Q
    |||||||||  ||||||||| ||||| | ||||||||||| ||||| |||  |||| || | |||||||||||| | | |||||||||||||||    
T  35961462 atacattcatgtaaaagtgagttgaattttaaatttgtgtataaaactca--tttacaaccaaaagctacaaattcaaacttcaagtagaatca 35961371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 669 - 699
Target Start/End: Original strand, 49581747 - 49581777
Alignment:
Q  669 tggaaaatagcagtttgttcaaactttgcta 699  Q
    |||||||||||||||||||||||||||||||    
T  49581747 tggaaaatagcagtttgttcaaactttgcta 49581777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 394 - 435
Target Start/End: Original strand, 38797631 - 38797672
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaatt 435  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||    
T  38797631 taaaagtgagttgaactataaatttgtgtgtgaaaatcaatt 38797672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 420 - 473
Target Start/End: Original strand, 51500862 - 51500915
Alignment:
Q  420 tgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    ||||||||| |||||| || |||| |||||||||||| |||| |||||||||||    
T  51500862 tgtgtaaaaatcaattctagaatcaaaagctacaaatcctaggttcaagtagaa 51500915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 8e-30; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 292 - 497
Target Start/End: Complemental strand, 40491759 - 40491558
Alignment:
Q  292 ggtgataagtattgattttgagtgaattaattacataaaattgattttgactataagagtgaattgattgtgtaaagtggtctgtgtttggatacattca 391  Q
    ||||| ||| |||||||||||||||||| |||   |||||||||||||||||| |||  ||| ||||  ||  |||||| | | | ||||||||||||||    
T  40491759 ggtgacaagaattgattttgagtgaattgattctgtaaaattgattttgactaaaag--tgagttgaaggt--aaagtgatttatttttggatacattca 40491664  T
Q  392 cataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaa 491  Q
      ||||||||| || |||| |||||||||||||||||||||||| || |||| |||||||||||   || ||||||||||| ||| ||||| ||||||||    
T  40491663 tgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaattctagaatcaaaagctacaaaacttaacttcaagtagagtcaattctgaaggcaaaa 40491564  T
Q  492 tcaatt 497  Q
    ||||||    
T  40491563 tcaatt 40491558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 395 - 526
Target Start/End: Original strand, 41386818 - 41386949
Alignment:
Q  395 aaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatca 494  Q
    |||||||| ||||| ||||||||||||||||||  |||||| || |||  |||||||||||| ||||||||||||||||||| ||||| |||  ||||||    
T  41386818 aaaagtgagttgaattataaatttgtgtgtaaatatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattctgaaggtgaaatca 41386917  T
Q  495 attctactcaaaaggaactaaacatgtaagaa 526  Q
    ||| ||||| |||| ||  |||||||| ||||    
T  41386918 attatactcgaaagcaatcaaacatgtcagaa 41386949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 363 - 465
Target Start/End: Complemental strand, 45557479 - 45557377
Alignment:
Q  363 gtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagc 462  Q
    |||||||| | ||||||||||||||||||  ||||||||| |||| ||| |||||||||||||||| |||||  || |||  ||||||||| || |||||    
T  45557479 gtaaagtgatttgtgtttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgtaaaaatcaatcctagaattaaaagctacagattctagc 45557380  T
Q  463 ttc 465  Q
    |||    
T  45557379 ttc 45557377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 421 - 526
Target Start/End: Original strand, 5489875 - 5489980
Alignment:
Q  421 gtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatg 520  Q
    |||| ||| |||||| || |||| |||||| ||| | ||||| ||||||||||||| || |||||||||||| |||||||||||  || ||| |||||||    
T  5489875 gtgttaaaatcaattatataatcaaaagctccaatttctagcatcaagtagaatcaattttggaggcaaaattaattctactcaggagcaaccaaacatg 5489974  T
Q  521 taagaa 526  Q
    ||||||    
T  5489975 taagaa 5489980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 374 - 481
Target Start/End: Original strand, 38123648 - 38123755
Alignment:
Q  374 tgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    |||||| ||| |||||||  ||||||||| |||| | ||||||||| |||||||| |||||| || |||   ||||||||| | ||||||||||||||||    
T  38123648 tgtgttcggacacattcatgtaaaagtgagttgaccaataaatttgagtgtaaaaatcaattctagaattagaagctacaatttctagcttcaagtagaa 38123747  T
Q  474 tcagttct 481  Q
    ||| ||||    
T  38123748 tcaattct 38123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 379 - 503
Target Start/End: Complemental strand, 27571960 - 27571836
Alignment:
Q  379 ttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagt 478  Q
    ||||||||||| |  |||| |||| |||||  ||||| ||| |||| ||| |||||| || |||| |||||| ||| | ||| ||||||||||||||| |    
T  27571960 ttggatacatttatgtaaatgtgagttgaataataaacttgagtgttaaaatcaattctagaatcaaaagctccaatttctaacttcaagtagaatcaat 27571861  T
Q  479 tctggaggcaaaatcaattctactc 503  Q
    ||| |||| |||||||||| |||||    
T  27571860 tcttgaggtaaaatcaattatactc 27571836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 394 - 521
Target Start/End: Original strand, 597948 - 598074
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatc 493  Q
    ||||||||| |||||| ||||||||  ||| || | |||||| || ||||||||||||| |||  |||||||||||||||||| ||||| || ||| ||     
T  597948 taaaagtgagttgaacaataaattttagtgcaagaatcaattatagaatcgaaagctac-aattttagcttcaagtagaatcaattctgcagccaatata 598046  T
Q  494 aattctactcaaaaggaactaaacatgt 521  Q
    ||||| |||  | |||||||||| ||||    
T  598047 aattccactttagaggaactaaaaatgt 598074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 411 - 501
Target Start/End: Original strand, 30182315 - 30182404
Alignment:
Q  411 ataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattctac 501  Q
    ||||||||| |||||||| | |||| || |||| |||||||||| |  |||||||||||||||||| || ||||||  |||||||||||||    
T  30182315 ataaatttgagtgtaaaaattaattctagaatcaaaagctacaatttttagcttcaagtagaatcaattttggagg-gaaatcaattctac 30182404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 379 - 441
Target Start/End: Complemental strand, 39956325 - 39956263
Alignment:
Q  379 ttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaa 441  Q
    |||||||||||||||||||||||| ||||| ||||||||| ||||| ||  |||||| |||||    
T  39956325 ttggatacattcacataaaagtgagttgaattataaatttatgtgtgaagatcaattataaaa 39956263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 459 - 521
Target Start/End: Complemental strand, 45005038 - 45004976
Alignment:
Q  459 tagcttcaagtagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    |||||||||||||||||| ||||| ||||||||||||||||| || | || ||| ||||||||    
T  45005038 tagcttcaagtagaatcaattctgaaggcaaaatcaattctattcgagagcaaccaaacatgt 45004976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 503
Target Start/End: Complemental strand, 22195967 - 22195838
Alignment:
Q  374 tgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    |||||||||||||||  |  ||||||||| || |||||||||| ||  ||| ||| ||||||||| |||| |||| |||||||  |||||| ||||| ||    
T  22195967 tgtgtttggatacatgaatgtaaaagtgaattaaactataaatatgcatgtgaaaatcaattttagaatcaaaagttacaaatcatagcttaaagtaaaa 22195868  T
Q  474 tcagttctggaggcaaaatcaattctactc 503  Q
    ||| || ||  | || ||||||||||||||    
T  22195867 tcaattttgaggacataatcaattctactc 22195838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 445 - 502
Target Start/End: Complemental strand, 36271012 - 36270955
Alignment:
Q  445 aaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattctact 502  Q
    |||||||||||| | | ||||||||||||| | |||| ||||||||||||||||||||    
T  36271012 aaagctacaaatcccaacttcaagtagaataaattctagaggcaaaatcaattctact 36270955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 337
Target Start/End: Original strand, 15019356 - 15019391
Alignment:
Q  302 attgattttgagtgaattaattacataaaattgatt 337  Q
    ||||||||||||||||||||||| ||||||||||||    
T  15019356 attgattttgagtgaattaattatataaaattgatt 15019391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 502
Target Start/End: Complemental strand, 31625494 - 31625398
Alignment:
Q  404 ttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattctact 502  Q
    |||||||||||||||| ||| |||  ||||||||| || | || ||||||||| ||||||| ||  ||||||| |||  ||| ||||||||||||||||    
T  31625494 ttgaactataaatttgcgtgaaaa--tcaattttataaccaaaggctacaaatcctagctttaatgagaatcaattcaagagacaaaatcaattctact 31625398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 450
Target Start/End: Original strand, 40795960 - 40796047
Alignment:
Q  363 gtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagct 450  Q
    |||||||||| | || |||||||||||||  ||||||||| |||||   |||||||| |||| ||| |||||| || |||||||||||    
T  40795960 gtaaagtggtttatgattggatacattcatgtaaaagtgatttgaatagtaaatttgagtgttaaaatcaattctacaatcgaaagct 40796047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 430 - 500
Target Start/End: Original strand, 28725090 - 28725160
Alignment:
Q  430 tcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattcta 500  Q
    |||||| || |||| |||||||||||| ||||||||||||| ||||| |  |||||||  |||||||||||    
T  28725090 tcaattatagaatcaaaagctacaaattctagcttcaagtataatcaatattggaggctgaatcaattcta 28725160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 445 - 502
Target Start/End: Complemental strand, 40422825 - 40422767
Alignment:
Q  445 aaagctacaaatactagcttcaagt-agaatcagttctggaggcaaaatcaattctact 502  Q
    ||||| |||||| ||| |||||||| ||||||| |||| ||||||||||||||||||||    
T  40422825 aaagccacaaatcctaacttcaagttagaatcaattcttgaggcaaaatcaattctact 40422767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 363 - 520
Target Start/End: Complemental strand, 41788430 - 41788275
Alignment:
Q  363 gtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagc 462  Q
    |||||||| | | |||||| ||||||| | |||||||||| ||||||   ||||||| |||| ||| |||||| || | || |||| | ||| | |||||    
T  41788430 gtaaagtgatttatgtttgtatacattaatataaaagtgagttgaacagcaaatttgagtgttaaaatcaattatagactcaaaagtttcaatttctagc 41788331  T
Q  463 ttcaagtagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatg 520  Q
    || ||||||||||| |||| |||  | ||||| |||||||||| || ||| |||||||    
T  41788330 tttaagtagaatcaattcttgag--acaatcatttctactcaagagcaaccaaacatg 41788275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 672 - 713
Target Start/End: Original strand, 18749198 - 18749239
Alignment:
Q  672 aaaatagcagtttgttcaaactttgctacacaacagtgctat 713  Q
    |||||||||||||||||||| | || ||||||||||||||||    
T  18749198 aaaatagcagtttgttcaaattatgttacacaacagtgctat 18749239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 394 - 507
Target Start/End: Original strand, 24951103 - 24951216
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatc 493  Q
    ||||||| |||| |||||||||  | | ||||||| |||||| || ||| || ||||||||||  ||| || ||||||||||  ||||  || |||||||    
T  24951103 taaaagtaacttcaactataaaactatatgtaaaaatcaattatagaattgagagctacaaatcttagatttaagtagaatcgattctaaagacaaaatc 24951202  T
Q  494 aattctactcaaaa 507  Q
    |||| |||||||||    
T  24951203 aattatactcaaaa 24951216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 379 - 456
Target Start/End: Complemental strand, 35772356 - 35772279
Alignment:
Q  379 ttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaat 456  Q
    ||||||||||| | |||||||| | ||||| ||||||||| | ||| ||| |||||| ||||||| ||| ||||||||    
T  35772356 ttggatacatttatataaaagtaaattgaattataaatttatttgtgaaaatcaattctaaaatcaaaaactacaaat 35772279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 374 - 435
Target Start/End: Original strand, 42816450 - 42816511
Alignment:
Q  374 tgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaatt 435  Q
    |||||||| |||||||||  || |||||| ||||| ||||||||||||||| ||| ||||||    
T  42816450 tgtgtttgcatacattcatgtagaagtgaattgaattataaatttgtgtgtgaaaatcaatt 42816511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 5e-28; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 374 - 498
Target Start/End: Complemental strand, 16518881 - 16518758
Alignment:
Q  374 tgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    ||||||||||||||||||  ||||||||| |||||||||||||||||| ||||||||| || ||| |||| |||||||||||| ||| |||| |||||||    
T  16518881 tgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgcgtaaaagtc-atcttataatcaaaagctacaaatcctatcttctagtagaa 16518783  T
Q  474 tcagttctggaggcaaaatcaattc 498  Q
    ||| ||||||| |||||| ||||||    
T  16518782 tcaattctggaagcaaaaccaattc 16518758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 365 - 503
Target Start/End: Original strand, 33019129 - 33019267
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagctt 464  Q
    |||||| | ||||||||||| ||||||  ||||||||| ||||||||||||||| ||||| ||| |||||| ||||| | |||||||||||| |||||||    
T  33019129 aaagtgatttgtgtttggatgcattcatgtaaaagtgagttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagctt 33019228  T
Q  465 caagtagaatcagttctggaggcaaaatcaattctactc 503  Q
    ||| || ||||| |||| |||||| |||||||| |||||    
T  33019229 caaatataatcaattctagaggcagaatcaattatactc 33019267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 415 - 502
Target Start/End: Original strand, 2002718 - 2002805
Alignment:
Q  415 atttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattctact 502  Q
    |||||||||||||| ||||||||| |||  ||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  2002718 atttgtgtgtaaaaatcaattttagaatgaaaaactacaaatcctagcttcaagtagaatcaggtctggaggcaaaatcaattctact 2002805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 365 - 502
Target Start/End: Complemental strand, 22536110 - 22535973
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagctt 464  Q
    |||||| | |||||||||||||||| |  ||||| ||| || |||||||||| |||||| |||| | |||| ||||||| |||||| ||||| |||  ||    
T  22536110 aaagtgatttgtgtttggatacatttatgtaaaaatgagtttaactataaatatgtgtgcaaaaattaattctaaaatcaaaagcttcaaattctaaatt 22536011  T
Q  465 caagtagaatcagttctggaggcaaaatcaattctact 502  Q
    |||||||||||| ||||  |||||||||||||||||||    
T  22536010 caagtagaatcaattctaaaggcaaaatcaattctact 22535973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 378 - 496
Target Start/End: Complemental strand, 42982643 - 42982523
Alignment:
Q  378 tttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatc-- 475  Q
    ||||||||||||||  ||||||||| ||| |  |||||||||||||||||| |||||| |  |||| |||||||||| | ||||||||||||||||||      
T  42982643 tttggatacattcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaattctggaatcaaaagctacaatttctagcttcaagtagaatcaa 42982544  T
Q  476 agttctggaggcaaaatcaat 496  Q
    | |||||||||||||||||||    
T  42982543 aattctggaggcaaaatcaat 42982523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 377 - 503
Target Start/End: Complemental strand, 10644703 - 10644577
Alignment:
Q  377 gtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatca 476  Q
    ||||||||||||| | |||||||||| ||||||||||||||| ||| | ||||| |||| || |||  ||| ||||||||  || ||||||||||||| |    
T  10644703 gtttggatacatttatataaaagtgagttgaactataaatttatgtatgaaagttaattctataatgaaaaactacaaatcttaacttcaagtagaataa 10644604  T
Q  477 gttctggaggcaaaatcaattctactc 503  Q
     || |||||||| ||||||||||||||    
T  10644603 attttggaggcagaatcaattctactc 10644577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 362 - 501
Target Start/End: Complemental strand, 33502349 - 33502223
Alignment:
Q  362 tgtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactag 461  Q
    ||||||||| | ||||||||||||||||    ||||||||| ||||||||||||| ||||||||||| ||||||||| |||| |||| |||||||         
T  33502349 tgtaaagtgatttgtgtttggatacattg---taaaagtgagttgaactataaatatgtgtgtaaaaatcaattttagaatcaaaagttacaaat----- 33502258  T
Q  462 cttcaagtagaatcagttctggaggcaaaatcaattctac 501  Q
         |||||||||| ||||||||||||||||||||||||    
T  33502257 -----agtagaatcaattctggaggcaaaatcaattctac 33502223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 348 - 486
Target Start/End: Complemental strand, 42741105 - 42740968
Alignment:
Q  348 gagtgaattgattgtgtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaa 447  Q
    |||| |||||||| | ||||||| | |||||||| ||||||| |  ||||||||| ||| ||  |||||||| |||||||| |||||| || |||| |||    
T  42741105 gagtaaattgattatctaaagtgatttgtgtttgaatacatt-atgtaaaagtgagttggacagtaaatttgagtgtaaaaatcaattctagaatcaaaa 42741007  T
Q  448 gctacaaatactagcttcaagtagaatcagttctggagg 486  Q
    |||||||||  |||||||||||||||||| || ||||||    
T  42741006 gctacaaatcttagcttcaagtagaatcaattatggagg 42740968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 459 - 521
Target Start/End: Original strand, 680344 - 680406
Alignment:
Q  459 tagcttcaagtagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    |||||||||||||||||| ||||||||||||||||| ||||| || |||| ||||||||||||    
T  680344 tagcttcaagtagaatcaattctggaggcaaaatcagttctattcgaaagcaactaaacatgt 680406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 396 - 505
Target Start/End: Complemental strand, 31453464 - 31453355
Alignment:
Q  396 aaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaa 495  Q
    ||||||| || |||| |||||||||| || ||| ||||||| | |||| ||||  ||||||  |||||||||||||||||| || | |||||||||| ||    
T  31453464 aaagtgagttaaactctaaatttgtgcgtgaaaatcaatttcagaatcaaaaggaacaaattttagcttcaagtagaatcaattatagaggcaaaataaa 31453365  T
Q  496 ttctactcaa 505  Q
    ||||||||||    
T  31453364 ttctactcaa 31453355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 378 - 474
Target Start/End: Original strand, 5533017 - 5533113
Alignment:
Q  378 tttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaat 474  Q
    ||||||||| ||||  |||| |||| ||||| ||||||||| |||||  || ||||||| | |||| ||||||||||||| ||||||||||||||||    
T  5533017 tttggatacgttcatgtaaatgtgagttgaattataaatttatgtgtttaaatcaatttaagaatcaaaagctacaaatagtagcttcaagtagaat 5533113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 365 - 481
Target Start/End: Complemental strand, 43501235 - 43501121
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagctt 464  Q
    |||||| | |||||||| |||||||||  ||||| ||| ||||| ||||| ||||||| || || |||||| ||||||| |||||||||||| |||| ||    
T  43501235 aaagtgatttgtgtttgtatacattcatgtaaaactgagttgaattataattttgtgt-tagaa-tcaattctaaaatcaaaagctacaaatcctagttt 43501138  T
Q  465 caagtagaatcagttct 481  Q
    |||||||||||| ||||    
T  43501137 caagtagaatcaattct 43501121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 394 - 497
Target Start/End: Complemental strand, 44439337 - 44439230
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaag-tagaatca---gttctggaggcaa 489  Q
    ||||||||| |||||| ||||||||| |||| ||| ||||||||| |||| |||||| |||||  |||||||||| ||||||||    |||| |||||||    
T  44439337 taaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaaattttagcttcaagttagaatcaattcttctagaggcaa 44439238  T
Q  490 aatcaatt 497  Q
    ||||||||    
T  44439237 aatcaatt 44439230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 410 - 470
Target Start/End: Complemental strand, 17281476 - 17281416
Alignment:
Q  410 tataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagta 470  Q
    ||||||||||||| | ||| ||||||||||||| |||||||||| ||| ||||||||||||    
T  17281476 tataaatttgtgtattaaaatcaattttaaaattgaaagctacagatagtagcttcaagta 17281416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 362 - 426
Target Start/End: Original strand, 44670858 - 44670922
Alignment:
Q  362 tgtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaa 426  Q
    ||||||||| | ||||||| ||||||||||| ||||||||| ||||| | |||||||||||||||    
T  44670858 tgtaaagtgatatgtgttttgatacattcacttaaaagtgagttgaattttaaatttgtgtgtaa 44670922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 420 - 499
Target Start/End: Complemental strand, 30503266 - 30503187
Alignment:
Q  420 tgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattct 499  Q
    ||||||||| |||||| |  |||| |||||||| ||| || |||||||||||||||| || |||||||||||||| ||||    
T  30503266 tgtgtaaaaatcaattcttgaatcaaaagctacgaatcctggcttcaagtagaatcaattttggaggcaaaatcatttct 30503187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 404 - 442
Target Start/End: Original strand, 31685981 - 31686019
Alignment:
Q  404 ttgaactataaatttgtgtgtaaaagtcaattttaaaat 442  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  31685981 ttgaactataaatttgtatgtaaaagtcaattttaaaat 31686019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 374 - 456
Target Start/End: Complemental strand, 32596094 - 32596012
Alignment:
Q  374 tgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaat 456  Q
    |||||||||||| ||| |  ||||||||| ||||| ||| ||||||| ||||||| ||||||||| |||| |||| |||||||    
T  32596094 tgtgtttggatatatttatgtaaaagtgagttgaattatgaatttgtatgtaaaaatcaattttagaatcaaaagttacaaat 32596012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 476
Target Start/End: Original strand, 4894128 - 4894241
Alignment:
Q  363 gtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagc 462  Q
    |||||||| | | ||||| ||||||||||  |||||||||||||||  ||||||||| || ||| | |||||| || |||| |||||||| | | ||||     
T  4894128 gtaaagtgatttatgtttagatacattcatttaaaagtgacttgaataataaatttgagtataataatcaattatagaatcaaaagctacgatttctagt 4894227  T
Q  463 ttcaagtagaatca 476  Q
    ||||||| ||||||    
T  4894228 ttcaagttgaatca 4894241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 474
Target Start/End: Complemental strand, 13912899 - 13912790
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagctt 464  Q
    |||||| | |||||||||||||| |||  ||||| ||| ||||||  ||||||||||||||||| | |||| || |||  |||  ||||||| |||||||    
T  13912899 aaagtgatttgtgtttggatacaatcatgtaaaaatgagttgaacggtaaatttgtgtgtaaaaattaattctagaataaaaaattacaaattctagctt 13912800  T
Q  465 caagtagaat 474  Q
    || |||||||    
T  13912799 catgtagaat 13912790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 445 - 521
Target Start/End: Original strand, 36987164 - 36987241
Alignment:
Q  445 aaagctacaaatactagcttcaagt-agaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    ||||||| |||| ||| |||||||| ||||||| ||||||| |||||||||||| |||||||||| | | ||||||||    
T  36987164 aaagctataaattctaacttcaagttagaatcatttctggaagcaaaatcaattatactcaaaagaatccaaacatgt 36987241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 365 - 505
Target Start/End: Original strand, 11504035 - 11504174
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagctt 464  Q
    |||||| | |||||||  |||||||||  ||||||||| ||||||||||| ||||||||| |||  ||||| || |||| ||| |||||||| ||| |||    
T  11504035 aaagtgatttgtgttttaatacattcatgtaaaagtgagttgaactataactttgtgtgtgaaa-acaattctataatcaaaaactacaaatcctaactt 11504133  T
Q  465 caagtagaatcagttctggaggcaaaatcaattctactcaa 505  Q
       ||||||||| || |||||| | ||||| || |||||||    
T  11504134 tcggtagaatcaattttggaggtagaatcagttatactcaa 11504174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 394 - 503
Target Start/End: Original strand, 37420197 - 37420308
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaa--atcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaa 491  Q
    ||||||||| |||||  ||||||||| |||||||| |||||| || |  ||   ||||||||  | |||| ||| |||||||||| |||| |||||||||    
T  37420197 taaaagtgagttgaataataaatttgagtgtaaaaatcaattctagagaattagaagctacattttctagattctagtagaatcaattctagaggcaaaa 37420296  T
Q  492 tcaattctactc 503  Q
    ||||||||||||    
T  37420297 tcaattctactc 37420308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 731 - 790
Target Start/End: Complemental strand, 42035571 - 42035513
Alignment:
Q  731 tatttgataagattttgtactgaaatgggtatcgtggaacaatagtgatttgttcaaatt 790  Q
    ||||||| || |||| ||||| |||| |||||||||||||| ||||||||||||||||||    
T  42035571 tatttgacaatatttagtact-aaataggtatcgtggaacagtagtgatttgttcaaatt 42035513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 413 - 498
Target Start/End: Original strand, 10618962 - 10619047
Alignment:
Q  413 aaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattc 498  Q
    ||||||| |||| ||| |||||| || |||| ||||||  || | |||||||||| |||||||| ||||  |||||||||||||||    
T  10618962 aaatttgagtgttaaaatcaattatagaatcaaaagctctaatttctagcttcaactagaatcaattctaaaggcaaaatcaattc 10619047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 650 - 691
Target Start/End: Original strand, 35849470 - 35849511
Alignment:
Q  650 tgttgtaaattgcggattgtggaaaatagcagtttgttcaaa 691  Q
    |||||| |||||| |||||||||||||||| |||||||||||    
T  35849470 tgttgtcaattgcagattgtggaaaatagcggtttgttcaaa 35849511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 2e-24; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 363 - 501
Target Start/End: Original strand, 5724601 - 5724739
Alignment:
Q  363 gtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagc 462  Q
    |||||||| | |||||||| |||  |||| |||||||||| || ||  ||| |||||||||||||| |||||| || |||  |||| ||||||| |||||    
T  5724601 gtaaagtgatttgtgtttgaatatgttcatataaaagtgagttaaatgatatatttgtgtgtaaaaatcaattatagaataaaaagttacaaatcctagc 5724700  T
Q  463 ttcaagtagaatcagttctggaggcaaaatcaattctac 501  Q
    |||||||||||||| || |||||||||||||||||||||    
T  5724701 ttcaagtagaatcaattttggaggcaaaatcaattctac 5724739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 376 - 500
Target Start/End: Complemental strand, 4911009 - 4910885
Alignment:
Q  376 tgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatc 475  Q
    |||||||||||||| |  ||||||||| | ||||||||||||||| ||| ||| |||||| || |||| ||||||||||||  |||||||||||||||||    
T  4911009 tgtttggatacatttatgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatc 4910910  T
Q  476 agttctggaggcaaaatcaattcta 500  Q
    | || | |||||| |||||||||||    
T  4910909 aatttttgaggcagaatcaattcta 4910885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 394 - 501
Target Start/End: Complemental strand, 26280688 - 26280581
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatc 493  Q
    ||||||||| || ||||||||||||||  |||||| ||||||||  |||| ||| |||||||| |||||||||||| |||||| |||| |||||||||||    
T  26280688 taaaagtgagtttaactataaatttgtacgtaaaaatcaattttggaatcaaaaactacaaattctagcttcaagtggaatcaattcttgaggcaaaatc 26280589  T
Q  494 aattctac 501  Q
    ||||||||    
T  26280588 aattctac 26280581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 404 - 520
Target Start/End: Original strand, 6654102 - 6654218
Alignment:
Q  404 ttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattctactc 503  Q
    ||||||||||||||| ||||| ||| |||| | || |||  |||||||||||| ||||||||||||||||| | ||||| ||| ||||||||||||||||    
T  6654102 ttgaactataaatttctgtgtgaaaatcaaatctagaattaaaagctacaaatcctagcttcaagtagaattaattctgaaggaaaaatcaattctactc 6654201  T
Q  504 aaaaggaactaaacatg 520  Q
    || || ||| |||||||    
T  6654202 aatagcaaccaaacatg 6654218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 366 - 502
Target Start/End: Complemental strand, 16540218 - 16540082
Alignment:
Q  366 aagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttc 465  Q
    ||||||| |||||||||||||||| |  ||||||||| || |||||||||| |||  || ||| ||||||  | |||| |||||||||||| ||||||||    
T  16540218 aagtggtttgtgtttggatacattgatgtaaaagtgagtttaactataaatatgtaagtgaaactcaattcaataatcaaaagctacaaatcctagcttc 16540119  T
Q  466 aagtagaatcagttctggaggcaaaatcaattctact 502  Q
    ||||||||||| || ||||| || |||||||| ||||    
T  16540118 aagtagaatcaattttggagacagaatcaattttact 16540082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 377 - 505
Target Start/End: Original strand, 1485131 - 1485259
Alignment:
Q  377 gtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatca 476  Q
    ||||||||||| | |  ||||||||| |||||| ||||||||| |||| ||| |||||| || |||| |||||| ||| | |||| ||||||||||||||    
T  1485131 gtttggatacacttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagctccaatttctagattcaagtagaatca 1485230  T
Q  477 gttctggaggcaaaatcaattctactcaa 505  Q
     ||||  ||||||||| ||||||||||||    
T  1485231 attctaaaggcaaaattaattctactcaa 1485259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 365 - 501
Target Start/End: Complemental strand, 3482158 - 3482022
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagctt 464  Q
    |||||| | |||||||| |||||||||  ||||||| | |||||||||||| |||||||| ||| |||||| ||||||| || |||||||||  || |||    
T  3482158 aaagtgatttgtgtttgaatacattcatgtaaaagtaagttgaactataaacttgtgtgtgaaaatcaattctaaaatcaaaggctacaaatcttaactt 3482059  T
Q  465 caagtagaatcagttctggaggcaaaatcaattctac 501  Q
    |||||| ||||| ||||  || || ||||||||||||    
T  3482058 caagtataatcaattctaaagacagaatcaattctac 3482022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 365 - 526
Target Start/End: Original strand, 25195339 - 25195498
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagctt 464  Q
    |||||| | |||||||||||||||| |  ||||||||| ||||| | ||||||||||| | ||| |||||| || |||  ||| |||||||| |  ||||    
T  25195339 aaagtgatttgtgtttggatacatttatgtaaaagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gctt 25195436  T
Q  465 caagtagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgtaagaa 526  Q
    |||||||||||| ||| ||||||| |||||||| ||||| | || ||| |||||||| ||||    
T  25195437 caagtagaatcaattccggaggcagaatcaattatactcgatagcaaccaaacatgtcagaa 25195498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 408 - 507
Target Start/End: Original strand, 7952725 - 7952824
Alignment:
Q  408 actataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattctactcaaaa 507  Q
    ||||||||||||||||| |||  ||||| || |||| |||||||||||| || |||||||||||||| | || |||||||||||| || || ||||||||    
T  7952725 actataaatttgtgtgtgaaacccaattctagaatcaaaagctacaaatcctcgcttcaagtagaataaattttggaggcaaaattaaatcaactcaaaa 7952824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 668 - 790
Target Start/End: Original strand, 33532430 - 33532552
Alignment:
Q  668 gtggaaaatagcagtttgttcaaactttgctacacaacagtgctattgagctactataactgctatttgataagattttgtactgaaatgggtatcgtgg 767  Q
    |||||||||||| ||||||||||| | |||||| |||||||||||| | || |||||| ||||| ||||| || ||| |||||| ||  | |||| |||     
T  33532430 gtggaaaatagcggtttgttcaaattctgctactcaacagtgctatagcgcaactatagctgctgtttgacaacattctgtactaaatagcgtatagtgt 33532529  T
Q  768 aacaatagtgatttgttcaaatt 790  Q
    |||||| | ||||||||||||||    
T  33532530 aacaatggcgatttgttcaaatt 33532552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 363 - 521
Target Start/End: Complemental strand, 34621000 - 34620842
Alignment:
Q  363 gtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagc 462  Q
    |||||||| | | |||||||||||||| |  ||||||||| |||||  ||||||||  |||||||| |||||| || ||||  ||||||  | | |||||    
T  34621000 gtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctatgatttctagc 34620901  T
Q  463 ttcaagtagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    |||| ||||||||| ||| ||||||||||| ||||||| |  | |||||| ||||||||    
T  34620900 ttcatgtagaatcaattccggaggcaaaattaattctagtttataggaaccaaacatgt 34620842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 363 - 521
Target Start/End: Complemental strand, 34748437 - 34748279
Alignment:
Q  363 gtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagc 462  Q
    |||||||| | | |||||||||||||| |  ||||||||| |||||  ||||||||  |||||||| |||||| || ||||  ||||||  | | |||||    
T  34748437 gtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctatgatttctagc 34748338  T
Q  463 ttcaagtagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    |||| ||||||||| ||| ||||||||||| ||||||| |  | |||||| ||||||||    
T  34748337 ttcatgtagaatcaattccggaggcaaaattaattctagtttataggaaccaaacatgt 34748279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 374 - 526
Target Start/End: Complemental strand, 7280593 - 7280441
Alignment:
Q  374 tgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    |||||||| | ||||| | |||||||||| |||||| ||||||||||||||||||   |||||| ||||| |||||||||| |  ||| || ||||| ||    
T  7280593 tgtgtttgaagacatttatataaaagtgaattgaacgataaatttgtgtgtaaaaagtaattttgaaatcaaaagctacaagttttagttttaagtaaaa 7280494  T
Q  474 tcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgtaagaa 526  Q
    ||| || | | | || |||||||||||||  |||| ||| |||||||| ||||    
T  7280493 tcaattttagggacacaatcaattctacttgaaagcaaccaaacatgtgagaa 7280441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 365 - 482
Target Start/End: Complemental strand, 25195960 - 25195845
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagctt 464  Q
    ||||| || ||||||||||||||||   ||  |||||| |||||||||||||||||||||| || |||||| || |||| ||||||| |||| |||| ||    
T  25195960 aaagttgtttgtgtttggatacatt--tatgtaagtgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagttt 25195863  T
Q  465 caagtagaatcagttctg 482  Q
     || |||||||| |||||    
T  25195862 taattagaatcaattctg 25195845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 394 - 518
Target Start/End: Original strand, 765390 - 765512
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatc 493  Q
    ||||| ||| ||||||||||||||| | |  || | |||||| || |||| ||||||||||||  |||||||||||||||||| |||| ||| ||||| |    
T  765390 taaaaatgagttgaactataaatttcttt--aataatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattcttgagccaaaacc 765487  T
Q  494 aattctactcaaaaggaactaaaca 518  Q
    | ||||||| ||||| ||| |||||    
T  765488 agttctacttaaaagcaaccaaaca 765512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 377 - 497
Target Start/End: Complemental strand, 852632 - 852512
Alignment:
Q  377 gtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatca 476  Q
    ||||| || ||||||  ||||||||| || ||| ||| ||||| |||||||| |||||| || ||||  || |||||| | |||||||||||| ||||||    
T  852632 gtttgtatgcattcatgtaaaagtgagttaaacaatacatttgggtgtaaaaatcaattctagaatcagaacctacaatttctagcttcaagttgaatca 852533  T
Q  477 gttctggaggcaaaatcaatt 497  Q
     || |||||||||||| ||||    
T  852532 attatggaggcaaaataaatt 852512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 454
Target Start/End: Complemental strand, 17225947 - 17225875
Alignment:
Q  382 gatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaa 454  Q
    ||||||||||  ||||| ||| ||||||||||||||||| ||||||| |||||| || |||| ||||||||||    
T  17225947 gatacattcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagctacaa 17225875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 493
Target Start/End: Complemental strand, 30927103 - 30927027
Alignment:
Q  417 ttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatc 493  Q
    |||||||||||| |||||| || |||| |||||||| |||  |||||||||||| ||||| ||||||| ||||||||    
T  30927103 ttgtgtgtaaaaatcaattctataatcaaaagctacgaatcttagcttcaagtataatcaattctggaagcaaaatc 30927027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 421 - 521
Target Start/End: Original strand, 35098487 - 35098587
Alignment:
Q  421 gtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatg 520  Q
    |||||||||| | || || |||| ||||||| |||| | ||  | ||||||||||| | ||||| ||||||||||||||||||||||| ||| |||||||    
T  35098487 gtgtaaaagttatttctagaatcaaaagctaaaaatcccagtattaagtagaatcaatcctggaagcaaaatcaattctactcaaaagtaaccaaacatg 35098586  T
Q  521 t 521  Q
    |    
T  35098587 t 35098587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 379 - 508
Target Start/End: Complemental strand, 2234614 - 2234484
Alignment:
Q  379 ttggatacattcacataaaagtgacttgaacta-taaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcag 477  Q
    ||||||||||| |  ||| ||||| |||||| | |||||||| |||| ||| |||||| || |||| |||||| ||  |  ||||||||||| ||||||     
T  2234614 ttggatacatttatgtaatagtgagttgaacaaataaatttgagtgttaaaatcaattctagaatcaaaagcttcagtttttagcttcaagttgaatcaa 2234515  T
Q  478 ttctggaggcaaaatcaattctactcaaaag 508  Q
    || || |||||||||||||||||||| ||||    
T  2234514 ttttgaaggcaaaatcaattctactcgaaag 2234484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 374 - 508
Target Start/End: Complemental strand, 8860607 - 8860473
Alignment:
Q  374 tgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    ||||||| ||||||||||   |||||||| |||||| |||||||| ||||| ||| |||||| | || |  ||||||||||||  | |||||||| ||||    
T  8860607 tgtgtttagatacattcatgcaaaagtgagttgaaccataaatttatgtgtcaaaatcaattcttaacttaaaagctacaaatcattgcttcaagcagaa 8860508  T
Q  474 tcagttctggaggcaaaatcaattctactcaaaag 508  Q
     || ||||   |||||||||||||| ||| |||||    
T  8860507 gcaattctcagggcaaaatcaattcaacttaaaag 8860473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 376 - 496
Target Start/End: Complemental strand, 882787 - 882667
Alignment:
Q  376 tgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatc 475  Q
    ||||||||||||||||   |||||||| || ||| |||||||||  ||||||| ||||||||  ||||  || ||| |     |||||||||||||||||    
T  882787 tgtttggatacattcatgcaaaagtgagttaaacaataaatttgaatgtaaaaatcaatttttgaatcagaacctagactgtttagcttcaagtagaatc 882688  T
Q  476 agttctggaggcaaaatcaat 496  Q
    |||||| ||||| ||||||||    
T  882687 agttctagaggccaaatcaat 882667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 376 - 483
Target Start/End: Original strand, 31305831 - 31305939
Alignment:
Q  376 tgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaag-tagaat 474  Q
    |||||||||| ||| |  ||||||||| |||| | ||||||||| ||||| || |||||| || |||| |||||| ||| |  |||||||||| ||||||    
T  31305831 tgtttggatatattaatgtaaaagtgagttgatcaataaatttgagtgtataaatcaattctagaatcaaaagctccaatttttagcttcaagttagaat 31305930  T
Q  475 cagttctgg 483  Q
    |||||||||    
T  31305931 cagttctgg 31305939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 521
Target Start/End: Original strand, 2008568 - 2008631
Alignment:
Q  458 ctagcttcaagtagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    ||||| ||| ||||||| | |||||||||||||||||||||||||  |||| ||| ||||||||    
T  2008568 ctagcatcacgtagaattaattctggaggcaaaatcaattctactagaaagcaaccaaacatgt 2008631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 476
Target Start/End: Original strand, 6895923 - 6896034
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagctt 464  Q
    |||||||| ||| ||| ||||||||||  ||||||||| || | ||||||||  |||||  ||| | |||| || |||| |||||||||||| ||| |||    
T  6895923 aaagtggtttgttttttgatacattcatgtaaaagtgaatttatctataaatacgtgtgcgaaaataaattctagaatcaaaagctacaaatcctaactt 6896022  T
Q  465 caagtagaatca 476  Q
    || |||||||||    
T  6896023 caggtagaatca 6896034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 712
Target Start/End: Complemental strand, 34227440 - 34227377
Alignment:
Q  649 gtgttgtaaattgcggattgtggaaaatagcagtttgttcaaactttgctacacaacagtgcta 712  Q
    ||||||| |||||| |||  ||||||||| ||||||||||||| ||  ||||||||||||||||    
T  34227440 gtgttgtcaattgccgatcatggaaaataacagtttgttcaaatttcactacacaacagtgcta 34227377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 374 - 500
Target Start/End: Original strand, 434219 - 434345
Alignment:
Q  374 tgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaa 473  Q
    |||||||||||| ||||   ||||||||| ||||| | ||||||| ||| ||||| |||||| ||||||| |||||||  |||  || |||||| || ||    
T  434219 tgtgtttggatatattcgtgtaaaagtgagttgaaatttaaatttatgtataaaaatcaattctaaaatcaaaagctattaattttaacttcaaatataa 434318  T
Q  474 tcagttctggaggcaaaatcaattcta 500  Q
    ||| || || | | |||||||||||||    
T  434319 tcaattatgaaagaaaaatcaattcta 434345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 386 - 456
Target Start/End: Complemental strand, 2046671 - 2046601
Alignment:
Q  386 cattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaat 456  Q
    ||||||||||||| ||| |  ||||||||| ||| |||||||| | |||||||||||| |||| |||||||    
T  2046671 cattcacataaaaatgagtataactataaacttgagtgtaaaaataaattttaaaatctaaagatacaaat 2046601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 469 - 519
Target Start/End: Original strand, 2234291 - 2234341
Alignment:
Q  469 tagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacat 519  Q
    |||||||| ||| |||||||||||||||||||||||| || ||| ||||||    
T  2234291 tagaatcaattcaggaggcaaaatcaattctactcaagagcaaccaaacat 2234341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 671 - 713
Target Start/End: Original strand, 19148507 - 19148549
Alignment:
Q  671 gaaaatagcagtttgttcaaactttgctacacaacagtgctat 713  Q
    ||||||||| |||||||||||||  ||||||||||||||||||    
T  19148507 gaaaatagcggtttgttcaaactccgctacacaacagtgctat 19148549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 446 - 500
Target Start/End: Original strand, 35098228 - 35098282
Alignment:
Q  446 aagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattcta 500  Q
    ||||||||| | |||||||||| |||||||| || || |||||||||||||||||    
T  35098228 aagctacaatttctagcttcaattagaatcaattttgtaggcaaaatcaattcta 35098282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 363 - 428
Target Start/End: Complemental strand, 2748107 - 2748043
Alignment:
Q  363 gtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaa 428  Q
    |||||||| | |||||||||||| |||   ||||| |||| |||||||||||||||||||||||||    
T  2748107 gtaaagtgatttgtgtttggatagatttgtataaa-gtgaattgaactataaatttgtgtgtaaaa 2748043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 658 - 687
Target Start/End: Original strand, 18270553 - 18270582
Alignment:
Q  658 attgcggattgtggaaaatagcagtttgtt 687  Q
    ||||||||||||||||||||||||||||||    
T  18270553 attgcggattgtggaaaatagcagtttgtt 18270582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 7e-24; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 386 - 494
Target Start/End: Complemental strand, 9818826 - 9818717
Alignment:
Q  386 cattcacataaaagtgacttgaactataaatttgtgtgtaaaag-tcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctgga 484  Q
    |||||| |||||||||| ||||||||||||||||||| |||||  |||||| || |||| ||||||||||||  |||||||||||||||||| || ||||    
T  9818826 cattcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatgga 9818727  T
Q  485 ggcaaaatca 494  Q
    ||||||||||    
T  9818726 ggcaaaatca 9818717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 365 - 500
Target Start/End: Complemental strand, 42858220 - 42858085
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagctt 464  Q
    |||||| |||||||||| ||| |||||  ||||||||| ||||||||||||||||||||| ||| |||||| || |||  |||||| ||||| ||| |||    
T  42858220 aaagtgatctgtgtttgaataaattcatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattatagaattaaaagctccaaatcctaactt 42858121  T
Q  465 caagtagaatcagttctggaggcaaaatcaattcta 500  Q
    |||||| ||||| |||| ||| |||||| |||||||    
T  42858120 caagtaaaatcaattctagagtcaaaatgaattcta 42858085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 406 - 476
Target Start/End: Original strand, 22226250 - 22226320
Alignment:
Q  406 gaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatca 476  Q
    ||||| ||||||||||||||||||| |||| ||||||| |||||||||||||||| |||||||||||||||    
T  22226250 gaactctaaatttgtgtgtaaaagttaattctaaaatcaaaagctacaaatactatcttcaagtagaatca 22226320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 368 - 476
Target Start/End: Original strand, 18851058 - 18851166
Alignment:
Q  368 gtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaa 467  Q
    ||||| ||||||||||||  ||||  ||||||||| || |||||||||| ||||||| ||| |||||| || |||| ||||||||||||  |||||||||    
T  18851058 gtggtttgtgtttggataacttcatgtaaaagtgagtttaactataaatatgtgtgtgaaaatcaattctataatcaaaagctacaaatcatagcttcaa 18851157  T
Q  468 gtagaatca 476  Q
    |||||||||    
T  18851158 gtagaatca 18851166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 378 - 476
Target Start/End: Original strand, 6951291 - 6951389
Alignment:
Q  378 tttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatca 476  Q
    |||||||| |||||  ||||||||| ||||| ||||||||| |||||| || |||||| || |||| |||||||||||| ||| |||||||||||||||    
T  6951291 tttggataaattcatgtaaaagtgaattgaattataaatttatgtgtacaaatcaattatagaatcaaaagctacaaatcctaacttcaagtagaatca 6951389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 376 - 521
Target Start/End: Original strand, 34250338 - 34250480
Alignment:
Q  376 tgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatc 475  Q
    |||||||| ||||||| | |||||| | |||||| | ||||||||||| ||||  ||||| || |||| |||||||||| | ||||| ||||||||||||    
T  34250338 tgtttggaaacattcata-aaaagtaagttgaacaaaaaatttgtgtgaaaaa--caattgtagaatcaaaagctacaatttctagcatcaagtagaatc 34250434  T
Q  476 agttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    | |||| |||||| |||||||||||||| | || ||| ||||||||    
T  34250435 aattctagaggcataatcaattctactctagagaaaccaaacatgt 34250480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 374 - 476
Target Start/End: Complemental strand, 38845547 - 38845444
Alignment:
Q  374 tgtgtttggatacattcacataaaa-gtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtaga 472  Q
    |||||||||||| |||||  ||||| |||| || ||||||| |||||||||| ||| |||||| || |||| ||| ||||||||  ||||||||||||||    
T  38845547 tgtgtttggatatattcatgtaaaaagtgagtttaactatatatttgtgtgtgaaaatcaattctagaatcaaaaactacaaatcttagcttcaagtaga 38845448  T
Q  473 atca 476  Q
    ||||    
T  38845447 atca 38845444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 394 - 500
Target Start/End: Original strand, 42439619 - 42439726
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaag-tagaatcagttctggaggcaaaat 492  Q
    ||||||||| |||||| ||||| ||  |||||||| |||  |||| | || ||||||||| || ||||||||||| |||||||| ||||||||| |||||    
T  42439619 taaaagtgagttgaacgataaaatttagtgtaaaaatcacgtttagactcaaaagctacagattctagcttcaagttagaatcaattctggaggaaaaat 42439718  T
Q  493 caattcta 500  Q
    ||||||||    
T  42439719 caattcta 42439726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 394 - 503
Target Start/End: Complemental strand, 36640020 - 36639911
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatc 493  Q
    |||||||||  |||||  |||||||| ||||||||  ||||| || |||   ||||||||| | | ||||||||||||||||  || |||||||||||||    
T  36640020 taaaagtgaggtgaacattaaatttgagtgtaaaaaacaattctagaattagaagctacaatttccagcttcaagtagaatctattttggaggcaaaatc 36639921  T
Q  494 aattctactc 503  Q
    ||||||||||    
T  36639920 aattctactc 36639911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 404 - 456
Target Start/End: Original strand, 370745 - 370797
Alignment:
Q  404 ttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaat 456  Q
    ||||| |||||||||||||||| || |||||||||||||| ||||||||||||    
T  370745 ttgaagtataaatttgtgtgtacaaatcaattttaaaatcaaaagctacaaat 370797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 649 - 713
Target Start/End: Original strand, 31632190 - 31632254
Alignment:
Q  649 gtgttgtaaattgcggattgtggaaaatagcagtttgttcaaactttgctacacaacagtgctat 713  Q
    ||||||| |||||| || || ||||||||||||||||||||||||  ||||||||||| ||||||    
T  31632190 gtgttgtgaattgcagaatgcggaaaatagcagtttgttcaaactcggctacacaacaatgctat 31632254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 393 - 456
Target Start/End: Original strand, 28110439 - 28110502
Alignment:
Q  393 ataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaat 456  Q
    |||||||||| || |||||||||||||||||| ||| |||||| ||||||| |||| |||||||    
T  28110439 ataaaagtgagttcaactataaatttgtgtgtgaaaatcaattctaaaatcaaaagttacaaat 28110502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 362 - 481
Target Start/End: Complemental strand, 39097361 - 39097242
Alignment:
Q  362 tgtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactag 461  Q
    ||||||||||| ||||||| ||| |||| |  |||||||   ||||||| ||||||| ||||| ||| |||||| || |||  |||| |||||||  |||    
T  39097361 tgtaaagtggtttgtgttttgattcatttatgtaaaagtaggttgaactttaaatttatgtgtgaaaatcaattatataattaaaagttacaaattttag 39097262  T
Q  462 cttcaagtagaatcagttct 481  Q
    ||||||||||||||| ||||    
T  39097261 cttcaagtagaatcaattct 39097242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 404 - 470
Target Start/End: Complemental strand, 35108312 - 35108246
Alignment:
Q  404 ttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagta 470  Q
    |||||||||||||||| |||||||| ||| |||||||||| |||| | |||| | ||||||||||||    
T  35108312 ttgaactataaatttgcgtgtaaaaatcagttttaaaatcaaaagttgcaaacaatagcttcaagta 35108246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 394 - 474
Target Start/End: Complemental strand, 15368456 - 15368376
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaat 474  Q
    ||||| ||| ||||| ||||||||||||||| | | |||||| || |||| |||| ||||| || ||||||||||||||||    
T  15368456 taaaactgagttgaattataaatttgtgtgttagaatcaattctataatcaaaagttacaactagtagcttcaagtagaat 15368376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 481
Target Start/End: Original strand, 22572410 - 22572493
Alignment:
Q  398 agtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttct 481  Q
    ||||| || |||||||||||||| | ||||| |||||| || |||| |||||||||||| | ||||||||| | ||||| ||||    
T  22572410 agtgagttaaactataaatttgtttataaaattcaattctataatcaaaagctacaaatcccagcttcaagaacaatcaattct 22572493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 497
Target Start/End: Complemental strand, 31906342 - 31906239
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatc 493  Q
    ||||||||| ||||||||||||||| | || |||  |||||| || |||| |||| |||||||  |||||||||||| ||||| || | |||| |||| |    
T  31906342 taaaagtgagttgaactataaatttatatgaaaatatcaattatataatcaaaagttacaaatcatagcttcaagtaaaatcaattatagaggtaaaaac 31906243  T
Q  494 aatt 497  Q
    ||||    
T  31906242 aatt 31906239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 521
Target Start/End: Complemental strand, 32980642 - 32980500
Alignment:
Q  378 tttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcag 477  Q
    ||||||||||||||  ||||||| ||| || | |||||||||  ||||||| ||| || || |||| |||| || ||||  || ||||||||| |||||     
T  32980642 tttggatacattcatgtaaaagtaactcgagcaataaatttgaatgtaaaaatcatttgtagaatcaaaagatataaatcttaacttcaagtaaaatcaa 32980543  T
Q  478 ttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    ||||| | ||||||||| ||||||| ||||  ||| ||||||||    
T  32980542 ttctgca-gcaaaatcacttctactaaaaaacaacaaaacatgt 32980500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 462 - 501
Target Start/End: Complemental strand, 43268506 - 43268467
Alignment:
Q  462 cttcaagtagaatcagttctggaggcaaaatcaattctac 501  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  43268506 cttcaagtagaaccaattctggaggcaaaatcaattctac 43268467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 445 - 497
Target Start/End: Original strand, 3970453 - 3970506
Alignment:
Q  445 aaagctacaaatactagcttca-agtagaatcagttctggaggcaaaatcaatt 497  Q
    |||||||||| | ||||||||| | |||||||| ||||||||||||||||||||    
T  3970453 aaagctacaattcctagcttcagattagaatcaattctggaggcaaaatcaatt 3970506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 394 - 435
Target Start/End: Complemental strand, 10898804 - 10898763
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaatt 435  Q
    ||||||||| |||||| |||||||||||||||||| ||||||    
T  10898804 taaaagtgagttgaacaataaatttgtgtgtaaaaatcaatt 10898763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 396 - 497
Target Start/End: Complemental strand, 14299411 - 14299310
Alignment:
Q  396 aaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaa 495  Q
    ||||||| | ||||||||||||| ||||| |||  ||||| || |||  ||| |||||||| ||| ||||||||||||||| || |  | ||||||||||    
T  14299411 aaagtgaatcgaactataaatttatgtgtgaaaaccaattctagaataaaaaactacaaatcctaacttcaagtagaatcaattttaaaagcaaaatcaa 14299312  T
Q  496 tt 497  Q
    ||    
T  14299311 tt 14299310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 375 - 476
Target Start/End: Original strand, 28031157 - 28031257
Alignment:
Q  375 gtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaat 474  Q
    ||||||| |||||||||  ||||||| | |||| |||||||||||||| |||||||||||| || |||| |||  || ||||  || |||||| ||||||    
T  28031157 gtgtttgaatacattcatgtaaaagtaagttgatctataaatttgtgt-taaaagtcaattatataatcaaaaaatataaattttaacttcaaatagaat 28031255  T
Q  475 ca 476  Q
    ||    
T  28031256 ca 28031257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 3e-23; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 365 - 497
Target Start/End: Original strand, 25359547 - 25359679
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagctt 464  Q
    |||||| | |||||||||||||||||| ||| |||||| || ||| |||||| ||||||| ||| |||||| || |||  ||| |||||||| ||| |||    
T  25359547 aaagtgatttgtgtttggatacattcatatagaagtgattttaacaataaatatgtgtgtgaaaatcaattatagaataaaaaactacaaattctaactt 25359646  T
Q  465 caagtagaatcagttctggaggcaaaatcaatt 497  Q
    |||||||||||| ||||||||||| ||||||||    
T  25359647 caagtagaatcaattctggaggcagaatcaatt 25359679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 364 - 470
Target Start/End: Original strand, 31708211 - 31708317
Alignment:
Q  364 taaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagct 463  Q
    ||||||||| ||||||||||||||||||  ||||||||| ||||| ||||||||||||||| | | |||||| || |||| ||||||||||||| |||||    
T  31708211 taaagtggtttgtgtttggatacattcatgtaaaagtgagttgaattataaatttgtgtgttagaatcaattctagaatcaaaagctacaaatagtagct 31708310  T
Q  464 tcaagta 470  Q
    || ||||    
T  31708311 tcgagta 31708317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 397 - 518
Target Start/End: Original strand, 32523345 - 32523467
Alignment:
Q  397 aagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagctt-caagtagaatcagttctggaggcaaaatcaa 495  Q
    |||||| || |||| ||||||||||||||||| ||||||||| |||| |||||||||||| ||| ||| |||||||||  | || ||||||||||||| |    
T  32523345 aagtgagttaaactctaaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctaacttccaagtagaaataattatggaggcaaaatcta 32523444  T
Q  496 ttctactcaaaaggaactaaaca 518  Q
    || ||||| |||| ||| |||||    
T  32523445 ttttactcgaaagcaaccaaaca 32523467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 446 - 503
Target Start/End: Original strand, 7717375 - 7717432
Alignment:
Q  446 aagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattctactc 503  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||    
T  7717375 aagctacaatttctagcttcaagtagaatcaattctggaggcaaaatcaattctactc 7717432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 393 - 503
Target Start/End: Complemental strand, 35058446 - 35058335
Alignment:
Q  393 ataaaagtgacttgaactataa-atttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaa 491  Q
    |||||||||| |||||| |||| ||||| |||| ||| |||||| || |||| ||||||  || | |||||| |||||||||||| |||| |||||||||    
T  35058446 ataaaagtgagttgaacaataatatttgagtgttaaaatcaattctagaatcaaaagctcgaatttctagctccaagtagaatcaattcttgaggcaaaa 35058347  T
Q  492 tcaattctactc 503  Q
    ||||||||||||    
T  35058346 tcaattctactc 35058335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 394 - 456
Target Start/End: Complemental strand, 4526215 - 4526153
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaat 456  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||| |||| |||||||    
T  4526215 taaaagtgtgttgaactataaatttgtgtgtaaaaatcaattttaaaatcaaaagttacaaat 4526153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 399 - 501
Target Start/End: Complemental strand, 44771772 - 44771670
Alignment:
Q  399 gtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattc 498  Q
    |||| |||||||  |||||  ||||||||| ||||||||| |||| |||||||||||| |||| || | ||||||||| ||| |||||||||| ||||||    
T  44771772 gtgagttgaacttcaaattaatgtgtaaaaatcaattttagaatcaaaagctacaaattctagatttaggtagaatcaattccggaggcaaaaccaattc 44771673  T
Q  499 tac 501  Q
    |||    
T  44771672 tac 44771670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 376 - 499
Target Start/End: Original strand, 35264395 - 35264518
Alignment:
Q  376 tgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatc 475  Q
    ||||||| ||||||||  ||||| |||||||||| ||||||||  |||| ||| |||||| || |||| ||||||  || | |||| |||||||||||||    
T  35264395 tgtttgggtacattcatgtaaaaatgacttgaacaataaatttaagtgttaaaatcaattctagaatcaaaagctctaatttctagtttcaagtagaatc 35264494  T
Q  476 agttctggaggcaaaatcaattct 499  Q
    |  | |||||||| ||||||||||    
T  35264495 atatttggaggcagaatcaattct 35264518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 365 - 464
Target Start/End: Original strand, 52141221 - 52141320
Alignment:
Q  365 aaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagctt 464  Q
    ||||| || |||||||  ||||||||| |||||||||| ||||||||||| | ||||||| ||| | |||| || ||||||| ||||||||| |||||||    
T  52141221 aaagtagtttgtgtttaaatacattcatataaaagtgagttgaactataattatgtgtgtgaaaattaattctagaatcgaatgctacaaatcctagctt 52141320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 474
Target Start/End: Complemental strand, 31013189 - 31013021
Alignment:
Q  302 attgattttgagtgaattaattacataaaattgattttgactataagagtgaattgattgtgtaaagtggtctgtgtttggatacattcacataaaagtg 401  Q
    |||||||||||||||||| ||| |||||||||||||  ||||| |||  ||| |||  |   ||||||| | ||||||||||| ||||||  || |||||    
T  31013189 attgattttgagtgaattgattccataaaattgattccgactaaaag--tgagttg--tagataaagtgatttgtgtttggatgcattcatgtacaagtg 31013094  T
Q  402 acttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaat 474  Q
    | ||||| | ||||||||||||| | | |||||| || | || || |||||||||| ||| ||||||||||||    
T  31013093 agttgaattctaaatttgtgtgttagaatcaattctagattcaaaggctacaaatagtaggttcaagtagaat 31013021  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 380 - 502
Target Start/End: Complemental strand, 36302280 - 36302158
Alignment:
Q  380 tggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagtt 479  Q
    ||||| ||||||  ||||||||| |||||| ||||||||  |||  ||| |||||| ||||||| ||| || |||   |||||||||| ||||||||  |    
T  36302280 tggattcattcatgtaaaagtgagttgaacaataaatttaagtgctaaaatcaattctaaaatcaaaatctccaatctctagcttcaaatagaatcaact 36302181  T
Q  480 ctggaggcaaaatcaattctact 502  Q
    ||| |||||||||||||||||||    
T  36302180 ctgaaggcaaaatcaattctact 36302158  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 440 - 521
Target Start/End: Original strand, 1441429 - 1441510
Alignment:
Q  440 aatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    |||| |||||||||||| |||| |||||||||| ||  || | ||| |||||||||||||||||||||| ||| ||||||||    
T  1441429 aatcaaaagctacaaatcctagtttcaagtagagtcgattatagagacaaaatcaattctactcaaaagaaaccaaacatgt 1441510  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 445 - 502
Target Start/End: Original strand, 41115415 - 41115472
Alignment:
Q  445 aaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattctact 502  Q
    |||||||||||| ||||||||||||||||||| ||||  | |||||||||||||||||    
T  41115415 aaagctacaaattctagcttcaagtagaatcaattctacaagcaaaatcaattctact 41115472  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 376 - 502
Target Start/End: Complemental strand, 5407005 - 5406881
Alignment:
Q  376 tgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatc 475  Q
    ||||||||||||||||  ||||||||| |||||   ||||||||| |  |||| |||||| || ||||  ||||||| | | |||||||| |||||||||    
T  5407005 tgtttggatacattcatgtaaaagtgatttgaagagtaaatttgttt--aaaaatcaattctataatcagaagctaccatttctagcttcgagtagaatc 5406908  T
Q  476 agttctggaggcaaaatcaattctact 502  Q
      |||| ||||||||||||||| ||||    
T  5406907 cattctagaggcaaaatcaattatact 5406881  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 383 - 497
Target Start/End: Original strand, 37335025 - 37335139
Alignment:
Q  383 atacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctg 482  Q
    ||||||||| |||||| ||| |||||| || ||||   |||||||| |||||| || |||| |||||||| | | ||| |||| |||| ||||| ||||     
T  37335025 atacattcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaattctagaatcaaaagctacgatttctaacttctagtaaaatcaattctc 37335124  T
Q  483 gaggcaaaatcaatt 497  Q
    |||||||||||||||    
T  37335125 gaggcaaaatcaatt 37335139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 503
Target Start/End: Complemental strand, 52364134 - 52364025
Alignment:
Q  394 taaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatc 493  Q
    ||||||||| ||||||| ||||||| ||| | ||| |||||| || |||| ||||||| ||||  ||||||||||||||| || |||| || |||  ||     
T  52364134 taaaagtgagttgaactgtaaatttatgtttgaaaatcaattatagaatcaaaagctataaatcatagcttcaagtagaaacaattctcgatgcatgatt 52364035  T
Q  494 aattctactc 503  Q
    ||||||||||    
T  52364034 aattctactc 52364025  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 404 - 456
Target Start/End: Original strand, 4401418 - 4401470
Alignment:
Q  404 ttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaat 456  Q
    ||||| |||||||| |||||||||| |||| ||||||||| ||||||||||||    
T  4401418 ttgaattataaattggtgtgtaaaaatcaactttaaaatcaaaagctacaaat 4401470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 378 - 474
Target Start/End: Complemental strand, 31492864 - 31492770
Alignment:
Q  378 tttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaat 474  Q
    |||||||||||| | ||||||  || ||||| ||||||||||||||| ||| |||||| || |||| ||||||||||||| | ||||||| ||||||    
T  31492864 tttggatacattaatataaaataga-ttgaattataaatttgtgtgttaaa-tcaattctagaatcaaaagctacaaatagttgcttcaaatagaat 31492770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 376 - 492
Target Start/End: Original strand, 40147834 - 40147950
Alignment:
Q  376 tgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatc 475  Q
    |||||||||||||| |  ||||||||| |||||  |||||||   ||||  || |||||| || |||| |||||| ||||| ||||||| ||||||||||    
T  40147834 tgtttggatacattaatgtaaaagtgagttgaatgataaattcaagtgttgaaatcaattctagaatcaaaagctccaaattctagcttgaagtagaatc 40147933  T
Q  476 agttctggaggcaaaat 492  Q
    | ||||| || ||||||    
T  40147934 aattctgaagacaaaat 40147950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 362 - 454
Target Start/End: Original strand, 41596119 - 41596211
Alignment:
Q  362 tgtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaa 454  Q
    ||||||||| | | ||||||||||||||||   |||||||| |  ||||||||| |||||||||||| |||||| |  |||| ||||||||||    
T  41596119 tgtaaagtgatttctgtttggatacattcatggaaaagtgagtcaaactataaacttgtgtgtaaaaatcaattctttaatcaaaagctacaa 41596211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 436 - 474
Target Start/End: Original strand, 26377445 - 26377483
Alignment:
Q  436 ttaaaatcgaaagctacaaatactagcttcaagtagaat 474  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  26377445 ttaaaatctaaagctacaaatagtagcttcaagtagaat 26377483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 413 - 467
Target Start/End: Original strand, 41208269 - 41208323
Alignment:
Q  413 aaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaa 467  Q
    |||||||||||| |||||||||||||||||  |||||||||| || || ||||||    
T  41208269 aaatttgtgtgttaaagtcaattttaaaatgaaaagctacaagtagtatcttcaa 41208323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 412 - 502
Target Start/End: Complemental strand, 54596883 - 54596793
Alignment:
Q  412 taaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattctact 502  Q
    ||||| |||| || ||| |||||| ||||||  |||| ||||||| ||| |||||| || ||||| || |||||||| |||||||||||||    
T  54596883 taaatatgtgggtgaaaatcaattctaaaattaaaagttacaaattctaacttcaaataaaatcatttttggaggcagaatcaattctact 54596793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 665 - 790
Target Start/End: Complemental strand, 5033456 - 5033331
Alignment:
Q  665 attgtggaaaatagcagtttgttcaaactttgctacacaacagtgctattgagctactataactgctatttgataagattttgtactgaaatgggtatcg 764  Q
    |||| |||||||||||||||||||||| |  ||||| |||||  ||||| | || ||||||||||| |||| |  | ||| |||||| ||  | |||||     
T  5033456 attgcggaaaatagcagtttgttcaaattccgctacgcaacacagctatagcgccactataactgcaatttcacgatattatgtactaaatagtgtatca 5033357  T
Q  765 tggaacaatagtgatttgttcaaatt 790  Q
     |||||||||||  ||||||||||||    
T  5033356 cggaacaatagttgtttgttcaaatt 5033331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 472 - 521
Target Start/End: Original strand, 7717453 - 7717502
Alignment:
Q  472 aatcagttctggaggcaaaatcaattctactcaaaaggaactaaacatgt 521  Q
    ||||| ||||||||||||||||||||||||||   |||||| ||||||||    
T  7717453 aatcaattctggaggcaaaatcaattctactctggaggaaccaaacatgt 7717502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 405 - 498
Target Start/End: Original strand, 44958619 - 44958712
Alignment:
Q  405 tgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctggaggcaaaatcaattc 498  Q
    ||||| ||||| ||| |||| ||| ||| || || |||| |||||| ||| | ||||| || ||||||||||  ||||||||||||||||||||    
T  44958619 tgaacaataaagttgagtgttaaaatcatttctagaatcaaaagctccaatttctagcatcgagtagaatcaactctggaggcaaaatcaattc 44958712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 366 - 503
Target Start/End: Complemental strand, 31940 - 31800
Alignment:
Q  366 aagtggtctgtgtttggatacattcacataaaagtgacttg---aactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagc 462  Q
    ||||||| |||||||||||||||| |  ||||||||| |||   |||||||||| ||| ||| ||| ||||||  | |||| |||||||||||| |||||    
T  31940 aagtggtttgtgtttggatacatttatgtaaaagtgagttgtttaactataaatatgtatgtgaaaatcaattcaataatcaaaagctacaaatcctagc 31841  T
Q  463 ttcaagtagaatcagttctggaggcaaaatcaattctactc 503  Q
    |||||||| ||||| || |||||||| |||||||| |||||    
T  31840 ttcaagtataatcaattttggaggcagaatcaattttactc 31800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 363 - 502
Target Start/End: Original strand, 14085 - 14223
Alignment:
Q  363 gtaaagtggtctgtgtttggatacattcacataaaagtgacttgaactataaatttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagc 462  Q
    |||||||| | | ||||||||||||||||  | ||||||| |||||  ||||||||| |||||||| |||||| || ||||  ||||||  | | |||||    
T  14085 gtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgagtgtaaaaatcaattctagaatcataagcta-gattgctagc 14183  T
Q  463 ttcaagtagaatcagttctggaggcaaaatcaattctact 502  Q
    |||||||||||||| |||| | | ||||||||||||||||    
T  14184 ttcaagtagaatcaattcttgtgacaaaatcaattctact 14223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 459 - 502
Target Start/End: Original strand, 12373 - 12417
Alignment:
Q  459 tagcttcaagt-agaatcagttctggaggcaaaatcaattctact 502  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||    
T  12373 tagcttcaagttagaatcatttctggaggcaaaatcaattctact 12417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 387 - 482
Target Start/End: Original strand, 220597 - 220694
Alignment:
Q  387 attcacataaaagtgacttgaactataaa--tttgtgtgtaaaagtcaattttaaaatcgaaagctacaaatactagcttcaagtagaatcagttctg 482  Q
    ||||| |||||||||| ||||||||||||  ||||| | ||||| |||||| || |||| ||| || ||||   |||||||||||||||||| |||||    
T  220597 attcatataaaagtgaattgaactataaatttttgtatctaaaaatcaattctagaatcaaaaactgcaaaacatagcttcaagtagaatcaattctg 220694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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