View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5973-Insertion-4 (Length: 875)
Name: NF5973-Insertion-4
Description: NF5973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5973-Insertion-4 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 503; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 280 - 871
Target Start/End: Original strand, 32668553 - 32669147
Alignment:
| Q |
280 |
atttgaggtaatatcgggtctgtgagtgaactttcataaaagtttattagtcggagtcaatatattcgagaggtgggtgggagaggcggctaatgtatta |
379 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
32668553 |
atttgaggtaatatcgggtctatgagtgaactttcataaaagtttattagtcggagtcaatatatcccagaggtgggtgggagaggcggctaatgtatta |
32668652 |
T |
|
| Q |
380 |
aaatgtaaaataggatttactctgtttaagtaacttggtttaccaatcaaagcaaatctgaggatattagatacttggcatccagtgattgaggctgtcg |
479 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32668653 |
aaatgtaaaataggatttactctgtttaagtaacttggtttaccaatcagagcaaatctgaggatattagatacttggcatccagtgattgaggctgtca |
32668752 |
T |
|
| Q |
480 |
gatcaagattgttgaagtggaagaataaacaattgcccattgtaggtcaaatcgttctaataaaatcagtcttctgtgtgcttcttgttcactatctttt |
579 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| |||||||||| |
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|
| T |
32668753 |
gatcaacattgttgaagtggaagaataaacaattgcccattgtaggtcgaatcgttctaataaaattagtcttgcatgtgcttcttgtttactatctttt |
32668852 |
T |
|
| Q |
580 |
ctttttcaaggctccg---ggtataatctcaaaacttgaatatcttttcaaacaatttttatggggaggaagtgagcatgtgagaaaaataaactgggtt |
676 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32668853 |
ctttttcaaggctccggcaggtataatctcaaaacttgaatatcttttcaaacaatttttatggggaggaagtgagcatgtgagaaaaataaactgggtt |
32668952 |
T |
|
| Q |
677 |
aaatgggaaagaccttatagcatagcatcaatcaatggtgcataaatccgagggtatgtattggagttttatggtaacttgatcactcgaagcttcatag |
776 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
32668953 |
aaataggaaagaccttatagcatagcatcaatcaatggtgcataaatccgagggtatgtatgggagttttatggtgacttgatcacttgaagcttcatag |
32669052 |
T |
|
| Q |
777 |
cagttcgttactttaatgttctgtttttaggatcatgttttggtgttgtattggtgtcgaagagacgggacttgggtggaattgcaastagtttt |
871 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| | ||||| |
|
|
| T |
32669053 |
cagttcgttactttaatgttctgtttttaggatcatgttctggtgttgtattggtgtcgaagagacgggacttgggaggaattgcaagtggtttt |
32669147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 32664100 - 32664373
Alignment:
| Q |
9 |
ttttgtttatatttcattctcgaggaagtacaatgtaatgactctatcatttatactagcaaggaggtacgttgtcgtcattcctttatctaatagcggc |
108 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
32664100 |
ttttgtttatatttcattctagaggaagtacaatgtaatgactctaccatttatactagcaaggaggtgcgttgtcgtcattcctttatctaatagtggc |
32664199 |
T |
|
| Q |
109 |
ggaaagcttcaatatgttgatgaggagggcaatggaggagggaaaattgacagtatacagatttgacatggaggaagacatgttcacacacttacaatat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32664200 |
ggaaagcttcaatatgttgatgaggagggcaatggaggagggaaaattgacagtatacagatttgacatggaggaagacatgttcacaaacttacaatat |
32664299 |
T |
|
| Q |
209 |
gccaacgatacattgattattcgtgagaaaaagtggtcaaatatcataatcatcaaggtaaatttgcttctatt |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32664300 |
gccaacgatacattgattattcgtgagaaaaagtggtcaaatatcagaatcatcaaggtaaatttgcttctatt |
32664373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 27119947 - 27119878
Alignment:
| Q |
197 |
cacttacaatatgccaacgatacattgattattcgtgagaaaaagtggtcaaatatcataatcatcaagg |
266 |
Q |
| |
|
||||||||||||| |||| |||||||||||| |||| |||||||||| |||||||||||||| |||| |
|
|
| T |
27119947 |
cacttacaatatgtagacgacacattgattattggtgaaaaaaagtggtagaatatcataatcattaagg |
27119878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 81 - 686
Target Start/End: Complemental strand, 23703605 - 23702996
Alignment:
| Q |
81 |
tgtcgtcattcctttatctaatagcggcggaaagcttcaatatgttgatgaggagggcaatggaggagggaaaattgacagtatacagatttgacatgga |
180 |
Q |
| |
|
||||||| ||||||||| |||| | || ||| |||| |||||||||||||||| |||| |||||||||||||||| |||| ||||| |||||||| || |
|
|
| T |
23703605 |
tgtcgtcgttcctttatttaattgtagcagaaggctttaatatgttgatgaggatggcagtggaggagggaaaattcacagaatacatatttgacaaggg |
23703506 |
T |
|
| Q |
181 |
ggaagacatgttcacacacttacaatatgccaacgatacattgattattcgtgagaaaaagtggtcaaatatcataatcatcaaggtaaatttgcttcta |
280 |
Q |
| |
|
||||||| | | ||||| |||||||||| ||||||||||||||||| |||| |||||||||| ||||||| ||| | |||| |||||| ||||| |
|
|
| T |
23703505 |
ggaagaccggctaacacatttacaatatgatgacgatacattgattattagtgaaaaaaagtggttgaatatcaaaattaaaaaggcaaatttacttctt |
23703406 |
T |
|
| Q |
281 |
tttgaggtaatatcgggtctgtgagtgaactttcataaaagtttattagtcggagtcaatatattcgagaggtgggtgggagaggcggctaatgtattaa |
380 |
Q |
| |
|
||||| ||||| | ||||| ||| |||||||||||||||| ||| || ||||||||||||| | || ||||||| |||||| ||||| || ||| |
|
|
| T |
23703405 |
tttgaagtaatgtttggtctaaaagtcaactttcataaaagttcattggtgggagtcaatatatcacaaagatgggtggaagaggcagctaaagtcctaa |
23703306 |
T |
|
| Q |
381 |
aatgtaaaataggatttactctgtttaagtaacttggtttaccaatcaaagcaaatctgaggatattagatacttggcatccagtgattgaggctgtcgg |
480 |
Q |
| |
|
| ||||||||| ||| |||||| |||||||| ||||||||||| || |||||||| |||| ||||||||| | ||| | ||||||||||||| | |
|
|
| T |
23703305 |
attgtaaaatatgatgtactctatttaagtatcttggtttacctattggagcaaatcctaggagattagatacatagcaactagtgattgaggctaggag |
23703206 |
T |
|
| Q |
481 |
atcaagattgttgaagtggaagaataaacaattgcccattgtaggtcaaatcgttctaataaaatcagtcttctgtgtgcttcttgttcactatcttttc |
580 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| ||||| |||| | || ||||||||||||||||||| | || ||||| |||| ||| ||||| | |
|
|
| T |
23703205 |
atcaagattgttgaagtggaagaataatcatttgtgcattggaggtagagtcattctaataaaatcagtcttgtctgcgcttcctgtttactttctttcc |
23703106 |
T |
|
| Q |
581 |
tttttcaaggct---ccgggtataatctcaaaacttgaatatcttttcaaaca-atttttatggggaggaagtgagcatgtgagaaaaataaactgggtt |
676 |
Q |
| |
|
|||||||||||| || |||||||||| |||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||| ||| |||||| |
|
|
| T |
23703105 |
tttttcaaggcttcgacgagtataatctcgaaacttgaatctcttttcaaacatttttttatggggaggaagtgaggatgtgagaaaaagaaattgggtt |
23703006 |
T |
|
| Q |
677 |
aaatgggaaa |
686 |
Q |
| |
|
|||||||||| |
|
|
| T |
23703005 |
aaatgggaaa |
23702996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 7e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 80 - 547
Target Start/End: Original strand, 39293940 - 39294408
Alignment:
| Q |
80 |
ttgtcgtcattcctttatctaatagcggcggaaagcttcaatatgttgatgaggagggcaatggaggagggaa-aattgacagtatacagatttgacatg |
178 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||||| ||||||||||||||||||||| | | |||||| ||| |||| |||| ||||| |||||||||| |
|
|
| T |
39293940 |
ttgtcgtcgttcctttttctaatagcagcggaagacttcaatatgttgatgaggagagtagtggaggtgggggcaattcacaggatacaaatttgacatg |
39294039 |
T |
|
| Q |
179 |
gaggaagacatgttcacacacttacaatatgccaacgatacattgattattcgtgagaaaaagtggtcaaatatcataatcatcaaggtaaatttgcttc |
278 |
Q |
| |
|
| |||||| | ||||| || ||| |||| ||| | |||| ||||||||| |||||||||||||||| ||||| |||||| |||| |||| || | |
|
|
| T |
39294040 |
ggggaagatcttttcactcatttagaatacgccgatgataacttgattattggtgagaaaaagtggtcgaatattcgaatcattaaggcaaatatgttat |
39294139 |
T |
|
| Q |
279 |
tatttgaggtaatatcgggtctgtgagtgaactttcataaaagtttattagtcggagtcaatatattcgagaggtgggtgggagaggcggctaatgtatt |
378 |
Q |
| |
|
||||||| ||||| | |||||| | | | | |||||||||||||| | ||||||| ||| | |||||| | || ||||||| | ||| | | |
|
|
| T |
39294140 |
tatttgaagtaatgttgggtctaaaaatcagttctcataaaagtttatcgatgggagtcattatctctcagaggtagtaggaagaggcgaccaatatcct |
39294239 |
T |
|
| Q |
379 |
aaaatgtaaaataggatttactctgtttaagtaacttggtttaccaatcaaagcaaatctgaggatattagatacttggcatccagtgattgaggctgtc |
478 |
Q |
| |
|
||| ||||||||||||| ||| |||||||||| |||||||||||||| ||||| || || |||| || ||||||||||||||||||||||||| || |
|
|
| T |
39294240 |
aaattgtaaaataggatccactatgtttaagtacattggtttaccaatcggagcaagtccgacgataataaatacttggcatccagtgattgaggcagtg |
39294339 |
T |
|
| Q |
479 |
ggatcaagattgttgaagtggaagaataaacaattgcccattgtaggtcaaatcgttctaataaaatca |
547 |
Q |
| |
|
| |||||||||| |||||||||||||||||| || | |||| ||||| | ||||| ||||||||||| |
|
|
| T |
39294340 |
aggtcaagattgtcaaagtggaagaataaacaactgtctattgaaggtctagtcgttttaataaaatca |
39294408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 620 - 684
Target Start/End: Original strand, 39294463 - 39294527
Alignment:
| Q |
620 |
cttttcaaacaatttttatggggaggaagtgagcatgtgagaaaaataaactgggttaaatggga |
684 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| | ||| |||||||||| ||| |||||||||| |
|
|
| T |
39294463 |
cttttcaaacaatttttatggggagggagtgaggaagtgtgaaaaataaattggattaaatggga |
39294527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 580 - 684
Target Start/End: Complemental strand, 29122023 - 29121916
Alignment:
| Q |
580 |
ctttttcaaggctccgg---gtataatctcaaaacttgaatatcttttcaaacaatttttatggggaggaagtgagcatgtgagaaaaataaactgggtt |
676 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||| ||||||||||||||| | |||||||| ||||| || ||||||||||| |||||| |
|
|
| T |
29122023 |
ctttttcaaggctccgacaagtataatctctaaacttgaatctcttttcaaacaattcatgtggggagggtgtgagggggtaagaaaaataaattgggtt |
29121924 |
T |
|
| Q |
677 |
aaatggga |
684 |
Q |
| |
|
|||||||| |
|
|
| T |
29121923 |
aaatggga |
29121916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 608 - 652
Target Start/End: Complemental strand, 22638980 - 22638936
Alignment:
| Q |
608 |
aaacttgaatatcttttcaaacaatttttatggggaggaagtgag |
652 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
22638980 |
aaacttgaatctcttttcaaacaatttttatggggagggagtgag |
22638936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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