View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5973-Insertion-5 (Length: 280)
Name: NF5973-Insertion-5
Description: NF5973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5973-Insertion-5 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 280
Target Start/End: Original strand, 58620 - 58891
Alignment:
| Q |
9 |
aactttgcatacaaaagaaaagaacacatgcttagttcatttgatagtctcagctaatttcgacgcagtatgaatgtcnnnnnnncttatcaatacatat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
58620 |
aactttgcatacaaaagaaaagaacacatgcttagttcatttgatagtctcagctaatttcgacgcagtatgaatgtcaaaaaaacttatcaatacatat |
58719 |
T |
|
| Q |
109 |
ataataataatgaagatgaattggatgatttgacaataaactcctggagaataacaaaagctagaatgaaagggttacaaaagagcagtcttgtccttca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
58720 |
ataataataatgaagatgaattggatgatttgacaataaactcctggagaataacaaaagctagaatgaaagggttacaaaagagcagtcttgtccttca |
58819 |
T |
|
| Q |
209 |
ataaccatattgctcagataatttagaaacatttcctatgcacaattgatggtccagactcatcatactcag |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
58820 |
ataaccatattgctcagataatttagaaacatttcctatgcacaattgatggtccagactcatcatactcag |
58891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University