View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5973_high_11 (Length: 255)
Name: NF5973_high_11
Description: NF5973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5973_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 612400 - 612162
Alignment:
| Q |
1 |
tttttctatatttaaaatgtgtgatatctggccattag---gatactcgacacaattataagaaaaaagaccaaagttgcatgcataaagaaactggata |
97 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||| |||||| |||| |||||||||||| |||||||||||||||| ||||||||||| ||||| |
|
|
| T |
612400 |
tttttctatatttaaaatgtgtgatctctgaccattagaaggatacttgacagaattataagaaacaagaccaaagttgcatacataaagaaaccggata |
612301 |
T |
|
| Q |
98 |
aatcaatgagctggtatatatcaaacattcatgattcaggcatatagtaaagagaaccattctatagtaaaatattaaccacgcatgcatatacacacgg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
612300 |
aatcaatgagctggtatatatcaaacattcatgattcaggcatatagtaaagagaaccattctatagtaaaatattaaccacgcatgcatatacacacgg |
612201 |
T |
|
| Q |
198 |
gtaagggtataagaatttttgtgttacggacaaaaacat |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
612200 |
gtaagggtataagaatttttgtgttacggacaaaaacat |
612162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University