View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5973_high_6 (Length: 425)
Name: NF5973_high_6
Description: NF5973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5973_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 9 - 409
Target Start/End: Original strand, 47726202 - 47726602
Alignment:
| Q |
9 |
acatcatcacatagactacttaaattcaaaaatggtgaaattgtgaacctacccaatcatggcatgaaagcataaaatggtcagcaccttgacttctgtt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
47726202 |
acatcatcacatagactacttaaattcaaaaatggtgaaattgtgaacctacccaatcatggcatgaaagcagaaaatggtcagcaccttgacttatgtt |
47726301 |
T |
|
| Q |
109 |
ccaataaggatacttgttggcaacaatgttgatataatcctcaactaaaagctgtaagcgatgaggattataatctgatcttgactttctaggcttgtaa |
208 |
Q |
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| T |
47726302 |
ccaataaggatacttgttggcaacaattttgatataatcctcaactaaaagctgtaagcgatgaggattataatctgatcttgactttctaggcttgtaa |
47726401 |
T |
|
| Q |
209 |
acatagcgaatgaccttagaaacgctgaaaggaagaaagaaaacatgggccagttcaggatgagtagccttgaatggactcttgttacttgtgtccattt |
308 |
Q |
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| T |
47726402 |
acatagcgaatgaccttagacacgctgaaaggaagaaagaaaacatgggccagttcaggatgagtagccttgaatggactcttgttacttgtgtccattt |
47726501 |
T |
|
| Q |
309 |
catcaatgaattgtccttcaatggaatatttgttgtttacaggtccatcatgcaccaatggttgttctccttccttgtatacccataccttgaatctctt |
408 |
Q |
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| T |
47726502 |
catcaatgaattgtccttcaatggaatatttgttgtttacaggtccatcatgcaccaatggttgctctccttccttgtatacccataccttgaatctctt |
47726601 |
T |
|
| Q |
409 |
c |
409 |
Q |
| |
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| |
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| T |
47726602 |
c |
47726602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 409
Target Start/End: Original strand, 47729070 - 47729179
Alignment:
| Q |
300 |
tgtccatttcatcaatgaattgtccttcaatggaatatttgttgtttacaggtccatcatgcaccaatggttgttctccttccttgtatacccatacctt |
399 |
Q |
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|||| ||||||||||||||||| |||||||| | |||| ||||||| || ||||||||||| || | |||||| |||||||| | ||||||||| | ||| |
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| T |
47729070 |
tgtctatttcatcaatgaattgaccttcaattgcatatatgttgttcactggtccatcatgtactattggttgctctccttcttggtatacccaaatctt |
47729169 |
T |
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| Q |
400 |
gaatctcttc |
409 |
Q |
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||||||||| |
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| T |
47729170 |
caatctcttc |
47729179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 82 - 256
Target Start/End: Complemental strand, 26955734 - 26955568
Alignment:
| Q |
82 |
aaaatggtcagcaccttgacttctgttccaataaggatacttgttggcaacaatgttgatataatcctcaactaaaagctgtaagcgatgaggattataa |
181 |
Q |
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||||||| ||||| |||| |||||||||||||||||||||||||| ||| ||| || ||||| |||||||||||| ||| | ||||||| |||| |
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| T |
26955734 |
aaaatggccagcatcttggcttctgttccaataaggatacttgtttgcagcaa-gt-------atcctaaactaaaagctgcaagtggtgaggatcataa |
26955643 |
T |
|
| Q |
182 |
tctgatcttgactttctaggcttgtaaacatagcgaatgaccttagaaacgctgaaaggaagaaagaaaacatgg |
256 |
Q |
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|
| T |
26955642 |
tctgatctggatcttctaggtttgtaaacatagcgaatgaccttagacacactgaaacgaagaaagaaaacatgg |
26955568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 263534 - 263602
Alignment:
| Q |
57 |
ctacccaatcatggcatgaaagcataaaatggtcagcaccttgacttctgttccaataaggatacttgt |
125 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
263534 |
ctacccaatcatggcatgaaagtagaaaatggtcagcaccttggcttctgttccaataaggatacttgt |
263602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 36515067 - 36515134
Alignment:
| Q |
58 |
tacccaatcatggcatgaaagcataaaatggtcagcaccttgacttctgttccaataaggatacttgt |
125 |
Q |
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|||||||||||| || |||||||| ||||||||||| || | |||||| |||||||||| ||| |||| |
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| T |
36515067 |
tacccaatcatgacaagaaagcatgaaatggtcagctccataacttctattccaataagcatatttgt |
36515134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 49301630 - 49301577
Alignment:
| Q |
58 |
tacccaatcatggcatgaaagcataaaatggtcagcaccttgacttctgttcca |
111 |
Q |
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||||||||||||||| | |||||| || ||||||||||| ||| |||||||||| |
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| T |
49301630 |
tacccaatcatggcaagcaagcatgaagtggtcagcaccatgagttctgttcca |
49301577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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