View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5973_low_1 (Length: 706)
Name: NF5973_low_1
Description: NF5973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5973_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 662; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 1 - 694
Target Start/End: Original strand, 413943 - 414636
Alignment:
| Q |
1 |
tggcggaagaggaagatgatgatgagcttgattccgaaatacaaacccggcctaaggacaatattaaagaatatcaaataaagtcggaacatatgccggt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
413943 |
tggcggaagaggaagatgatgatgagcttgattccgaaatacaaagccggcctaaggacaatattaaagaatatcaaataaagtcggaacatatgccggt |
414042 |
T |
|
| Q |
101 |
attaagaaaaatcatcggcaagcatggagatattgtgaagaactgcacgacaaagtttgtgaagttccgttcattgttcttggaggcaatctgtgaaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
414043 |
attaagaaaaatcatcggcaagcatggagatattgtgaagaactgcacgacaaagtttgtgaagttccgttcattgttcttggaggcaatttgtgaaatc |
414142 |
T |
|
| Q |
201 |
atagcagagttggacaaaaagaatgctagtattgctaacatctcaagcaaaaacctggaaaagaagattgacgtcgtgagttatataaaaaaccagaacg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
414143 |
atagcagagttggacaaaaagaatgctagtattgctaacatctcaagcaaaaacctggaaaagaagattgacgtcgtgagttatataaaaaaccagaacg |
414242 |
T |
|
| Q |
301 |
tggatgttgaatggcttcacagcaggctaactgagatacttgaggcaaggcgaattcttaagcagacttgcaagctgatacaggatacagacagcgttag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
414243 |
tggatgttgaatggcttcacagcaggctaactgagatacttgaggcaaggcgaattcttaagcagacttgcaagctgatacaggaaacagacagcgttag |
414342 |
T |
|
| Q |
401 |
gttggtgactgaagctgctgaaagagatttgaacaaatgggaagcaaggaaggaggaactgacagagaaggttaaagtaatatttcttgaattgaaagaa |
500 |
Q |
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| T |
414343 |
gatggtgactgaagctgctgaaagagatttgaacaaatgggaagcaaggaaggaggaactgacagagaaggttaaagaaatatttcatgaattgaaagaa |
414442 |
T |
|
| Q |
501 |
gcaactgataaggaagctgattgcaaagaaagattggttagagcgcacaatgagtctaccaagatatctcaaatagtcaaagatgccaaatctaaagtca |
600 |
Q |
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| T |
414443 |
gcaactgataaggaagctgattgcaaagaaagattggttagagcgcacaatgagtctaccaagatatctcaaatagtcaaagatgccaaatctaaagtca |
414542 |
T |
|
| Q |
601 |
gacgatttcttgactgctcacttattgatgatttgctttagtatgttgcaatttcatctccttttcttcttttttcatactactggttgatgat |
694 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
414543 |
gacgatttcttgactgctcacttattgatgatttgctttagtatgttgcaatttcatctccttttcttcttgtttcatactactggtttatgat |
414636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 7527817 - 7527762
Alignment:
| Q |
102 |
ttaagaaaaatcatcggcaagcatggagatattgtgaagaactgcacgacaaagtt |
157 |
Q |
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||||||||| | |||||||||||||||||||||| |||||| ||||| ||||||| |
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| T |
7527817 |
ttaagaaaagttatcggcaagcatggagatattgcgaagaattgcacttcaaagtt |
7527762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 7527612 - 7527576
Alignment:
| Q |
312 |
tggcttcacagcaggctaactgagatacttgaggcaa |
348 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||| |
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| T |
7527612 |
tggcttcacagtaggctaactgacatacttgaggcaa |
7527576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 6e-33; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 506 - 662
Target Start/End: Complemental strand, 37211772 - 37211616
Alignment:
| Q |
506 |
tgataaggaagctgattgcaaagaaagattggttagagcgcacaatgagtctaccaagatatctcaaatagtcaaagatgccaaatctaaagtcagacga |
605 |
Q |
| |
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|||||| || |||||||| ||||| |||||| |||| ||| ||||||||||||| | |||||||| ||| ||||||| ||||||||||||||||||| |
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| T |
37211772 |
tgataaagaggctgattggaaagagagattgactagaatgcaggatgagtctaccaaaacatctcaaagagtaaaagatgtcaaatctaaagtcagacga |
37211673 |
T |
|
| Q |
606 |
tttcttgactgctcacttattgatgatttgctttagtatgttgcaatttcatctcct |
662 |
Q |
| |
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||| |||| |||||||| ||||||| ||||||||||||||||| |||||| |||||| |
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| T |
37211672 |
tttgttgattgctcactaattgatggtttgctttagtatgttgtaatttcttctcct |
37211616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 506 - 661
Target Start/End: Complemental strand, 37217454 - 37217299
Alignment:
| Q |
506 |
tgataaggaagctgattgcaaagaaagattggttagagcgcacaatgagtctaccaagatatctcaaatagtcaaagatgccaaatctaaagtcagacga |
605 |
Q |
| |
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|||||| || |||||||| ||| | |||||||||||| ||| ||||||||||||||| || ||| | ||||||||| ||||||||||||||||| | |
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| T |
37217454 |
tgataaagaggctgattggaaaaagagattggttagaatgcatgatgagtctaccaagacattcaaaagaatcaaagatggcaaatctaaagtcagacaa |
37217355 |
T |
|
| Q |
606 |
tttcttgactgctcacttattgatgatttgctttagtatgttgcaatttcatctcc |
661 |
Q |
| |
|
|||||| | ||||||| ||||||||||| ||||||||||||||||||||||||| |
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|
| T |
37217354 |
tttcttaatggctcactggttgatgatttgatttagtatgttgcaatttcatctcc |
37217299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 37212254 - 37211916
Alignment:
| Q |
18 |
gatgatgagcttgattccgaaatacaaacccggcctaaggacaatattaaagaatatcaaataaagtcggaacatatgccggtattaagaaaaatcatcg |
117 |
Q |
| |
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||||||||| ||||||| ||||| |||| || |||| |||||| |||| ||||||| | ||| | ||| |||| || ||||||||||||| |||| |
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| T |
37212254 |
gatgatgaggttgattctgaaatgcaaagccagcctgaggacatggttaatatatatcaagtgaagccagaatttatgtcgatattaagaaaaattatcg |
37212155 |
T |
|
| Q |
118 |
gcaagcatggagatattgtgaagaactgcacgacaaagtttgtgaagttccgttcattgttcttggaggcaatctgtgaaatcatagcagagttggacaa |
217 |
Q |
| |
|
|||| |||||||||||| ||||| || |||||||| ||||| || |||||| |||||||| | ||||||||||| ||| |||| |||||||| |
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| T |
37212154 |
gcaaacatggagatattaccaagaattgtgtgacaaagtcggtgaaatttcgttcagctttcttggatacgatctgtgaaataatatcagatttggacaa |
37212055 |
T |
|
| Q |
218 |
aaagaatgctagtattgctaacatctcaagcaaaaacctggaaaagaagattgacgtcgtgagttatataaaaaaccagaacgtggatgttgaatggctt |
317 |
Q |
| |
|
|||| || |||||||||||| | | || ||||| ||| ||||| | | ||| | | | |||||||| | ||| ||||| ||||| |||||| |
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|
| T |
37212054 |
aaaggat------attgctaacatcaaaggaaatgacctgaaaattaagatcggtgacgttaatgacataaaaaatctgaaagtggaagttgagtggctt |
37211961 |
T |
|
| Q |
318 |
cacagcaggctaactgagatacttgaggcaaggcgaattcttaag |
362 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
37211960 |
cacaccaggctaactgagatacttgaggcaaggcagattcttaag |
37211916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 37183737 - 37183604
Alignment:
| Q |
92 |
tatgccggtattaagaaaaatcatcggcaagcatggagatattgtgaagaactgcacgacaaagtttgtgaagttccgttcattgttcttggaggcaatc |
191 |
Q |
| |
|
||||||| | ||||||||||| ||||| |||||||||||||||| ||||| ||| | |||||| ||| || |||||||| |||| |||||| ||| |
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| T |
37183737 |
tatgccgatgttaagaaaaattatcggtaagcatggagatattgctaagaattgcttggcaaagtctgtaaaattccgttcggtgttgttggagatgatc |
37183638 |
T |
|
| Q |
192 |
tgtgaaatcatagcagagttggacaaaaagaatg |
225 |
Q |
| |
|
|||| ||| ||| |||| |||||| ||||||||| |
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|
| T |
37183637 |
tgtggaattatatcagatttggacgaaaagaatg |
37183604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 225
Target Start/End: Complemental strand, 37194869 - 37194736
Alignment:
| Q |
92 |
tatgccggtattaagaaaaatcatcggcaagcatggagatattgtgaagaactgcacgacaaagtttgtgaagttccgttcattgttcttggaggcaatc |
191 |
Q |
| |
|
||||||| | ||||||||||| ||||| |||||||||||||||| ||||| ||| | |||||| ||| || |||||||| |||| |||||| ||| |
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| T |
37194869 |
tatgccgatgttaagaaaaattatcggtaagcatggagatattgctaagaattgcttggcaaagtctgtaaaattccgttcggtgttgttggagatgatc |
37194770 |
T |
|
| Q |
192 |
tgtgaaatcatagcagagttggacaaaaagaatg |
225 |
Q |
| |
|
|||| ||| ||| |||| |||||| ||||||||| |
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|
| T |
37194769 |
tgtggaattatatcagatttggacgaaaagaatg |
37194736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 312 - 366
Target Start/End: Complemental strand, 37217627 - 37217573
Alignment:
| Q |
312 |
tggcttcacagcaggctaactgagatacttgaggcaaggcgaattcttaagcaga |
366 |
Q |
| |
|
|||||||| | ||||||||||| |||||||||||||||| ||||||||||||| |
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|
| T |
37217627 |
tggcttcaaaccaggctaactggaatacttgaggcaaggcagattcttaagcaga |
37217573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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