View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5973_low_10 (Length: 256)
Name: NF5973_low_10
Description: NF5973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5973_low_10 |
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| [»] scaffold0187 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37855414 - 37855660
Alignment:
| Q |
1 |
catctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg---------gtattattatgataatgcttcata |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37855414 |
catctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattattatgataatgcttcata |
37855513 |
T |
|
| Q |
92 |
tgataacaaagtgtggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaag |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37855514 |
tgataacaaagtgtggccaagtgatgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaag |
37855613 |
T |
|
| Q |
192 |
aaacgtatttctgaatctcaaattcattgccaagctcaacctgatca |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37855614 |
aaacgtatttctgaatctcaaattcattgccaagctcaacctgatca |
37855660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37867602 - 37867848
Alignment:
| Q |
1 |
catctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg---------gtattattatgataatgcttcata |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
37867602 |
catctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattattatgataatgcttcata |
37867701 |
T |
|
| Q |
92 |
tgataacaaagtgtggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaag |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37867702 |
tgataacaaagtgtggccaagtgatgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaag |
37867801 |
T |
|
| Q |
192 |
aaacgtatttctgaatctcaaattcattgccaagctcaacctgatca |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37867802 |
aaacgtatttctgaatctcaaattcattgccaagctcaacctgatca |
37867848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37881642 - 37881888
Alignment:
| Q |
1 |
catctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg---------gtattattatgataatgcttcata |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
37881642 |
catctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattattatgataatgcttcata |
37881741 |
T |
|
| Q |
92 |
tgataacaaagtgtggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaag |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37881742 |
tgataacaaagtgtggccaagtgatgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaag |
37881841 |
T |
|
| Q |
192 |
aaacgtatttctgaatctcaaattcattgccaagctcaacctgatca |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37881842 |
aaacgtatttctgaatctcaaattcattgccaagctcaacctgatca |
37881888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37911587 - 37911833
Alignment:
| Q |
1 |
catctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg---------gtattattatgataatgcttcata |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
37911587 |
catctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattattatgataatgcttcata |
37911686 |
T |
|
| Q |
92 |
tgataacaaagtgtggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaag |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37911687 |
tgataacaaagtgtggccaagtgatgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaag |
37911786 |
T |
|
| Q |
192 |
aaacgtatttctgaatctcaaattcattgccaagctcaacctgatca |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37911787 |
aaacgtatttctgaatctcaaattcattgccaagctcaacctgatca |
37911833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 27490 - 27244
Alignment:
| Q |
1 |
catctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagg---------gtattattatgataatgcttcata |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27490 |
catctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagaggaggaggagggtattattatgataatgcttcata |
27391 |
T |
|
| Q |
92 |
tgataacaaagtgtggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaag |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27390 |
tgataacaaagtgtggccaagtgatgaagacagaggtagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaag |
27291 |
T |
|
| Q |
192 |
aaacgtatttctgaatctcaaattcattgccaagctcaacctgatca |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27290 |
aaacgtatttctgaatctcaaattcattgccaaggtcaacctgatca |
27244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 17149 - 16916
Alignment:
| Q |
11 |
atcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagggt------attattatgataatgcttcatatgataacaaagtg |
104 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||| | ||||||||| ||| | | |||| ||||||||| |
|
|
| T |
17149 |
atcatcattcaggtctgttttcaacatttttaaatctagtagtaacaagcaaagaggtggaggagagtattatgatcatggtgcttatgctaacaaagta |
17050 |
T |
|
| Q |
105 |
tggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctg |
204 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17049 |
tggccaagtgatgaagatagaggaagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctg |
16950 |
T |
|
| Q |
205 |
aatctcaaattcattgccaagctcaacctgatca |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
16949 |
aatctcaaattcattgccaagctcaacctgatca |
16916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 6821 - 6588
Alignment:
| Q |
11 |
atcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaagagggt------attattatgataatgcttcatatgataacaaagtg |
104 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||| | ||||||||| ||| | | |||| ||||||||| |
|
|
| T |
6821 |
atcatcattcaggtctgttttcaacatttttaaatctagtagtaacaagcaaagaggtggaggagagtattatgatcatggtgcttatgctaacaaagta |
6722 |
T |
|
| Q |
105 |
tggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgtatttctg |
204 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6721 |
tggccaagtgatgaagatagaggaagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaaacgaatttctg |
6622 |
T |
|
| Q |
205 |
aatctcaaattcattgccaagctcaacctgatca |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
6621 |
aatctcaaattcattgccaagctcaacctgatca |
6588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 9239802 - 9239670
Alignment:
| Q |
1 |
catctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcagtaacaagcaaa---------gagggtattattatgataatgcttcata |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9239802 |
catctaaatcatcatcattcaggtcagttttcaacatattcaaatctagcaataacaagcaaagaggaggaggagggtattattatgataatgcttcata |
9239703 |
T |
|
| Q |
92 |
tgataacaaagtgtggccaagtgatgaagacag |
124 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
9239702 |
tgataacaaagtgtggcctagtgatgaagacag |
9239670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 45759409 - 45759321
Alignment:
| Q |
105 |
tggccaagtgatgaagacagaggcagttggggtgtagctgatcctgttattgacatgagagctacagcattcattgctcaatacaagaa |
193 |
Q |
| |
|
||||| ||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| |
|
|
| T |
45759409 |
tggcctagtgatgaagacaaaggtacatggggggtagctgatcctgttattgacatgagagctacagcttttattgctcgatacaagaa |
45759321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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