View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5973_low_12 (Length: 254)
Name: NF5973_low_12
Description: NF5973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5973_low_12 |
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| [»] scaffold0187 (4 HSPs) |
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Alignment Details
Target: scaffold0187 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 419 - 175
Alignment:
| Q |
10 |
aagaatatattttgatggagggactaacttgattgatatttttcagtcaaggttatagttttaattgatatgttgatgtgcctttgtccaaaagttgaat |
109 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
419 |
aagaaaatattttgatggagggactaacttgattgatatttttcaatcaaggttatagttttaattgatatgttgatgtgcctttgtccaaaagttgaat |
320 |
T |
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| Q |
110 |
cataatttactgttccatgtgaacttgtttaaaccatgaatattggactcaccctagtggtttgaatccgattccttgtctttgtttaacaaaaagggtg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
319 |
cataatttactgttccatgtgaacttgtttaaaccatgaatattggactcaccctagtggtttgaatccgattccttgtctttgtttaacaaaaagggtg |
220 |
T |
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| Q |
210 |
tttagtagtaattggtactatataaactgagaccccctagctttc |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
219 |
tttagtagtaattggtactatataaactgagaccccctagctttc |
175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 98 - 252
Target Start/End: Complemental strand, 7096 - 6936
Alignment:
| Q |
98 |
caaaagttgaatcataatttactgttccatgtgaacttgtttaaaccatgaatattggactcaccctagtggtttgaatccgattcc--ttgtctttgtt |
195 |
Q |
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||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| |
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| T |
7096 |
caaaagttgtatcataatttacagttccatgtgatcttgtttaaaccatgaatattggactcaccctagtggtttgaatcagattccttttgtcttagtt |
6997 |
T |
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| Q |
196 |
taacaaaaagggtgtttag-tagtaa---ttggtactatataaactgagaccccctagctt |
252 |
Q |
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| T |
6996 |
taacaaaaagggtgtttagttagtaatagttagtactatataaactgagaccccctagctt |
6936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 98 - 252
Target Start/End: Complemental strand, 17424 - 17264
Alignment:
| Q |
98 |
caaaagttgaatcataatttactgttccatgtgaacttgtttaaaccatgaatattggactcaccctagtggtttgaatccgattcc--ttgtctttgtt |
195 |
Q |
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||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| |
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| T |
17424 |
caaaagttgtatcataatttacagttccatgtgatcttgtttaaaccatgaatattggactcaccctagtggtttgaatcagattccttttgtcttagtt |
17325 |
T |
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| Q |
196 |
taacaaaaagggtgtttag-tagtaa---ttggtactatataaactgagaccccctagctt |
252 |
Q |
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| T |
17324 |
taacaaaaagggtgtttagttagtaatagttagtactatataaactgagaccccctagctt |
17264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 27791 - 27638
Alignment:
| Q |
100 |
aaagttgaatcataatttactgttccatgtgaacttgtttaaaccat--gaatattggactcaccctagtggtttgaatccgattcc-ttgtctttgttt |
196 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||| |||||| |||||| |||| |
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| T |
27791 |
aaagttgaatcataatttacagttccatgtgatcttgtttaaaccataggaatattggagacaccccagtggtttgaatcagattcctttgtctaagttt |
27692 |
T |
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| Q |
197 |
aacaaaaagggtgtttagtagtaattggtactatataaactgagaccccctagctttc |
254 |
Q |
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|||||||||| |||||| ||||| |||||||||||| |||||||||||||||| |
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| T |
27691 |
aacaaaaaggttgttta----taattagtactatataaatatagaccccctagctttc |
27638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 136 - 252
Target Start/End: Original strand, 37855174 - 37855292
Alignment:
| Q |
136 |
gtttaaaccatgaatattggactcaccctagtggtttgaatccgattcc--ttgtctttgtttaacaaaaagggtgtttagtagtaattggtactatata |
233 |
Q |
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|||| ||||||||||||||||||||||| ||| ||||||||| |||||| ||||||| ||||||||||| |||||||||||| ||||| |||||||||| |
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| T |
37855174 |
gtttgaaccatgaatattggactcaccccagttgtttgaatcagattccctttgtcttagtttaacaaaaggggtgtttagtaataattagtactatata |
37855273 |
T |
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| Q |
234 |
aactgagaccccctagctt |
252 |
Q |
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| T |
37855274 |
aattgagaccccctagctt |
37855292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 100 - 254
Target Start/End: Original strand, 37911286 - 37911439
Alignment:
| Q |
100 |
aaagttgaatcataatttactgttccatgtgaacttgtttaaaccat--gaatattggactcaccctagtggtttgaatccgattcc-ttgtctttgttt |
196 |
Q |
| |
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|||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||| |||||| |||||| |||| |
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| T |
37911286 |
aaagttgaatcataatttacagttccatgtgatcttgtttaaaccataggaatattggagacaccccagtggtttgaatcagattcctttgtctaagttt |
37911385 |
T |
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| Q |
197 |
aacaaaaagggtgtttagtagtaattggtactatataaactgagaccccctagctttc |
254 |
Q |
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|||||||||| |||||| ||||| |||||||||||| |||||||||||||||| |
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| T |
37911386 |
aacaaaaaggttgttta----taattagtactatataaatatagaccccctagctttc |
37911439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 95 - 254
Target Start/End: Original strand, 37881337 - 37881497
Alignment:
| Q |
95 |
gtccaaaagttgaatcataatttactgttccatgtgaacttgtttaaaccatgaatattggactcaccctagtggtttgaatccgattcc--ttgtcttt |
192 |
Q |
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||||||||||||||| |||||||| ||||||| ||| |||||||||||| |||||||| ||||||| | ||| ||||||| |||||| |||||| |
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| T |
37881337 |
gtccaaaagttgaatgataatttaatgttccacatgagtttgtttaaaccaagaatattgaactcacctcaatgggttgaatcagattccctctgtctta |
37881436 |
T |
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| Q |
193 |
gtttaacaaaaagggtgtttagtagtaattggtactatataaactgagaccccctagctttc |
254 |
Q |
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||||||| ||||||||||||| ||||||| |||||||||||| | |||| ||||||||||| |
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| T |
37881437 |
gtttaac-aaaagggtgtttatgagtaattagtactatataaattaagactccctagctttc |
37881497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 37867379 - 37867468
Alignment:
| Q |
167 |
tggtttgaatccgattccttgtctttgtttaacaaaaaggg-tgttta---gtagtaattggtactatataaactgagaccccctagctt |
252 |
Q |
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||||||||||| ||||| ||||||| | |||||||||| || |||||| ||||||||| |||||||||||| ||||||||| |||||| |
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| T |
37867379 |
tggtttgaatcagattctttgtcttagcttaacaaaaaaggctgtttattagtagtaatttgtactatataaattgagaccccatagctt |
37867468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 37854886 - 37854926
Alignment:
| Q |
99 |
aaaagttgaatcataatttactgttccatgtgaacttgttt |
139 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||| |
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| T |
37854886 |
aaaagttgaatcataattcactgttccatgtgatcttgttt |
37854926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 9240025 - 9239936
Alignment:
| Q |
167 |
tggtttgaatccgattccttgtctttgtttaacaaaaagggt-gttta---gtagtaattggtactatataaactgagaccccctagctt |
252 |
Q |
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||||||||||| ||||| ||||||| | |||| ||||| ||| ||||| ||||||||| |||||||||||| |||||||||||||||| |
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| T |
9240025 |
tggtttgaatcagattctttgtcttagcttaataaaaaaggttgtttattagtagtaatttgtactatataaattgagaccccctagctt |
9239936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 41513908 - 41513870
Alignment:
| Q |
16 |
atattttgatggagggactaacttgattgatatttttca |
54 |
Q |
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| T |
41513908 |
atattttgatggagagactaaattgattgatatttttca |
41513870 |
T |
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