View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5973_low_15 (Length: 244)

Name: NF5973_low_15
Description: NF5973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5973_low_15
NF5973_low_15
[»] chr5 (15 HSPs)
chr5 (14-228)||(27135-27348)
chr5 (14-138)||(2076457-2076579)
chr5 (14-138)||(20318168-20318290)
chr5 (14-138)||(24177701-24177823)
chr5 (18-117)||(37123752-37123849)
chr5 (12-55)||(1288592-1288635)
chr5 (142-216)||(1288466-1288540)
chr5 (142-216)||(20318322-20318396)
chr5 (142-216)||(1274596-1274670)
chr5 (142-216)||(2076351-2076425)
chr5 (142-216)||(12493239-12493313)
chr5 (142-216)||(24177855-24177929)
chr5 (23-65)||(35685044-35685086)
chr5 (14-75)||(17212445-17212506)
chr5 (23-67)||(14099514-14099558)
[»] chr4 (17 HSPs)
chr4 (14-131)||(23907292-23907407)
chr4 (14-138)||(435409-435531)
chr4 (21-138)||(48623510-48623625)
chr4 (21-138)||(39707648-39707762)
chr4 (14-138)||(1777999-1778122)
chr4 (14-138)||(53703786-53703909)
chr4 (14-138)||(27451156-27451278)
chr4 (27-66)||(2296364-2296403)
chr4 (23-61)||(33369028-33369066)
chr4 (145-216)||(1777892-1777963)
chr4 (23-138)||(55769365-55769478)
chr4 (23-138)||(55833621-55833734)
chr4 (142-216)||(435563-435637)
chr4 (142-216)||(23907179-23907253)
chr4 (23-61)||(41598176-41598214)
chr4 (10-59)||(16002181-16002230)
chr4 (45-128)||(44860319-44860398)
[»] chr8 (12 HSPs)
chr8 (14-138)||(36566224-36566346)
chr8 (21-126)||(36544336-36544438)
chr8 (14-64)||(6184837-6184887)
chr8 (14-76)||(15216314-15216376)
chr8 (30-123)||(35094015-35094106)
chr8 (27-76)||(42855056-42855105)
chr8 (142-216)||(36544483-36544557)
chr8 (36-117)||(30579226-30579305)
chr8 (142-228)||(45231786-45231873)
chr8 (142-228)||(13983964-13984050)
chr8 (23-76)||(25984736-25984789)
chr8 (27-75)||(11130981-11131029)
[»] chr7 (21 HSPs)
chr7 (14-138)||(32629785-32629907)
chr7 (14-138)||(39907362-39907484)
chr7 (14-138)||(36651171-36651293)
chr7 (14-138)||(46356834-46356956)
chr7 (14-76)||(22346689-22346751)
chr7 (14-138)||(33350789-33350911)
chr7 (24-138)||(36870307-36870419)
chr7 (14-138)||(38606216-38606337)
chr7 (14-76)||(38896794-38896856)
chr7 (23-129)||(48055808-48055912)
chr7 (142-216)||(49028612-49028686)
chr7 (38-138)||(11593154-11593252)
chr7 (12-63)||(17101539-17101590)
chr7 (21-132)||(24178184-24178293)
chr7 (23-65)||(32483659-32483701)
chr7 (23-61)||(33738384-33738422)
chr7 (142-216)||(11593284-11593358)
chr7 (142-216)||(33350683-33350757)
chr7 (142-216)||(36651325-36651399)
chr7 (142-216)||(46356728-46356802)
chr7 (147-216)||(38896947-38897016)
[»] chr3 (9 HSPs)
chr3 (14-138)||(52138005-52138127)
chr3 (14-138)||(51448692-51448814)
chr3 (23-67)||(50630371-50630415)
chr3 (21-68)||(38849286-38849333)
chr3 (27-64)||(48220971-48221008)
chr3 (142-216)||(52138159-52138233)
chr3 (27-62)||(3368954-3368989)
chr3 (142-216)||(51448586-51448660)
chr3 (23-52)||(30724850-30724879)
[»] chr2 (8 HSPs)
chr2 (14-138)||(45368608-45368731)
chr2 (14-138)||(452599-452721)
chr2 (14-138)||(24584589-24584711)
chr2 (14-138)||(2609705-2609827)
chr2 (14-132)||(8179970-8180088)
chr2 (23-75)||(14769486-14769538)
chr2 (142-216)||(452493-452567)
chr2 (142-216)||(38453495-38453569)
[»] chr6 (8 HSPs)
chr6 (14-132)||(9705952-9706068)
chr6 (14-138)||(5260231-5260353)
chr6 (14-138)||(6082577-6082699)
chr6 (14-138)||(20428620-20428742)
chr6 (21-76)||(2681479-2681534)
chr6 (25-138)||(2208385-2208496)
chr6 (14-68)||(30670071-30670125)
chr6 (27-217)||(3629456-3629636)
[»] chr1 (16 HSPs)
chr1 (14-138)||(43241364-43241486)
chr1 (21-138)||(29173512-29173627)
chr1 (14-126)||(8671095-8671205)
chr1 (14-68)||(49348453-49348507)
chr1 (21-138)||(51441747-51441862)
chr1 (24-138)||(32405447-32405558)
chr1 (25-138)||(34828068-34828179)
chr1 (142-209)||(49348278-49348345)
chr1 (142-216)||(43241258-43241332)
chr1 (142-203)||(29173419-29173480)
chr1 (174-214)||(35829272-35829312)
chr1 (145-228)||(37463726-37463810)
chr1 (142-204)||(8671252-8671314)
chr1 (25-67)||(35829443-35829485)
chr1 (142-216)||(51441641-51441715)
chr1 (105-137)||(37463846-37463878)
[»] scaffold0113 (2 HSPs)
scaffold0113 (21-138)||(13241-13356)
scaffold0113 (142-216)||(13133-13207)
[»] scaffold0045 (1 HSPs)
scaffold0045 (15-76)||(90133-90194)
[»] scaffold0018 (1 HSPs)
scaffold0018 (21-138)||(30652-30767)
[»] scaffold0286 (1 HSPs)
scaffold0286 (25-138)||(484-595)
[»] scaffold0220 (1 HSPs)
scaffold0220 (14-57)||(25271-25314)
[»] scaffold0171 (1 HSPs)
scaffold0171 (24-75)||(5634-5685)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 27135 - 27348
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27135 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgatag-atttcctaaagagatttttgtcgaaagccctagaga 27233  T
Q  114 agaagggggttaggattgcttatatgaatcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatca 213  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  27234 agaagggggttaggattgcttatattaatcgactagtgtgaggacgtatgaggggcctttcgacgattttcccgtaacaataggattgcacgaaggatca 27333  T
Q  214 acctaagctcttacc 228  Q
    |||||||||||||||    
T  27334 acctaagctcttacc 27348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 2076579 - 2076457
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||| |||||| |||||| || | || | ||||| |||||| | ||||||||||||    
T  2076579 atatcggacggataaaaaagacttgcacttaattttcattgatttggaaaaggcgtatgata-gagtaccgagagaga-ttttgtggcaagccctagaga 2076482  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |  | |||||||||||||| |||||    
T  2076481 aataaggggttaggattgcctatat 2076457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 20318168 - 20318290
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||| |||||| || | ||   ||||| |||||| ||||||||| ||||    
T  20318168 atatcggacggataaataagacttgcacttagttttcattaatttggaaaaggcgtatgata-gagtaccgggagaga-ttttgtggaaagccctggaga 20318265  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| |||||||||||||| |||||    
T  20318266 agaaaggggttaggattgcctatat 20318290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 24177701 - 24177823
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| | |||||  |||||| || | || | ||||| |||||| ||||||||| ||||    
T  24177701 atatcggacggataaaaaagacttgcacttagttttcattgatttgaaaaaggcatatgata-gagtaccgagagaga-ttttgtggaaagccctggaga 24177798  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| |||||||| ||||| |||||    
T  24177799 agaaaggggttagcattgcctatat 24177823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 37123752 - 37123849
Alignment:
Q  18 cgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaa 117  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||||   | |||||| || |||||||||||| ||||||  |||| ||||||||||||    
T  37123752 cgaatggataaaaaagatgtgcacttagttttcattgatttggagaaactgtatgata-gagttcctaaagaga-ttttgtgtaaagtcctagagaagaa 37123849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 1288635 - 1288592
Alignment:
Q  12 caatatcgaacggataaaaaagacttgcacttagttttcattga 55  Q
    |||||||| ||||||||||||||| |||||||||||||||||||    
T  1288635 caatatcggacggataaaaaagacatgcacttagttttcattga 1288592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 1288540 - 1288466
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||||||||||||||| | || ||| ||  ||| ||||||||||||| ||||||||||||| |||| ||||||    
T  1288540 tcgactagtgtgaggacgcaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaacc 1288466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 20318322 - 20318396
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||||||||||||||| | || ||| ||  ||| ||||||||||||| ||||||||||||| |||| ||||||    
T  20318322 tcgactagtgtgaggacgcaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaacc 20318396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 1274596 - 1274670
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||||||||||||||| | || ||| ||  ||| ||||||||||||| ||||| ||||||| |||| ||||||    
T  1274596 tcgactagtgtgaggacgcaggatgggactaccgaagattttcccataacaatagaattgcaccaagggtcaacc 1274670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 2076425 - 2076351
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||||||||||||||| |||| | | ||  ||| |||||||||| || ||||||||||||| |||| ||||||    
T  2076425 tcgactagtgtgaggacgcatgatgagactaccgaagattttcccacaacaataggattgcaccaagggtcaacc 2076351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 12493313 - 12493239
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||||||||||||||| | || ||| ||  |||  |||||||||||| ||||||||||||| |||| ||||||    
T  12493313 tcgactagtgtgaggacgcaggatgggactaccgaatattttcccataacaataggattgcaccaagggtcaacc 12493239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 24177855 - 24177929
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||||||||||||||| | || ||| ||  ||| |||||||| |||| ||||||||||||| |||| ||||||    
T  24177855 tcgactagtgtgaggacgcaggatgggactaccgaagattttccgataacaataggattgcaccaagggtcaacc 24177929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 35685044 - 35685086
Alignment:
Q  23 ggataaaaaagacttgcacttagttttcattgatttggagaag 65  Q
    ||||||||||||||| | |||| ||||||||||||||||||||    
T  35685044 ggataaaaaagacttacgcttaattttcattgatttggagaag 35685086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 17212445 - 17212506
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgata 75  Q
    |||||||| || | |||| ||||||||||||| ||||||||||||| ||||| || ||||||    
T  17212445 atatcgaatgggtcaaaatgacttgcacttagatttcattgatttgaagaagacgtatgata 17212506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 14099514 - 14099558
Alignment:
Q  23 ggataaaaaagacttgcacttagttttcattgatttggagaaggc 67  Q
    |||| ||||||||||| ||||||||||||||||||| || |||||    
T  14099514 ggattaaaaagacttgaacttagttttcattgattttgataaggc 14099558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 23907407 - 23907292
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || | || | ||||| |||||| ||||||||| ||||    
T  23907407 atatcgaacggataaaaaagacttgcacttagttttcattgatttggaaaaggcgtatgata-gagtaccaagagaga-ttttgtggaaagccctggaga 23907310  T
Q  114 agaagggggttaggattg 131  Q
    |||| |||||||||||||    
T  23907309 agaaaggggttaggattg 23907292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 435409 - 435531
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||| || |||||| || | || | ||||| |||||| ||||||||| ||||    
T  435409 atatcggacggataaaaaagacttgcacttagttttcattgatttggaaaagacgtatgata-gagtaccgagagaga-ttttgtggaaagccctggaga 435506  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| |||||||||||||| |||||    
T  435507 agaaaggggttaggattgcctatat 435531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 48623625 - 48623510
Alignment:
Q  21 acggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaaggg 120  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| | |||||| || | || | ||||| |||||| ||||||||| |||||||| ||    
T  48623625 acggataaaaaagacttgcacttagttttcattgatttggaaaaggtgtatgata-gagtaccgagagaga-ttttgtggaaagccctggagaagaaagg 48623528  T
Q  121 ggttaggattgcttatat 138  Q
    |||||||||||| |||||    
T  48623527 ggttaggattgcctatat 48623510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 39707648 - 39707762
Alignment:
Q  21 acggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaaggg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||| || | |||| ||||  |||||| ||||| ||| |||||||| ||    
T  39707648 acggataaaaaagacttgcacttagttttcattgatttggagaagacgtatgata-gagtgcctagagag-gttttgt-gaaagtcctggagaagaaagg 39707744  T
Q  121 ggttaggattgcttatat 138  Q
    |||| ||||||| |||||    
T  39707745 ggtttggattgcctatat 39707762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 1778122 - 1777999
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttgg-agaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagag 112  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||| | |||| | |||||| || |  | | ||||| |||||| ||||||||| |||    
T  1778122 atatcggacggataaaaaaaacttgcacttagttttcattgatttggaaaaaggtgtatgata-gagtatcaagagaga-ttttgtggaaagcccttgag 1778025  T
Q  113 aagaagggggttaggattgcttatat 138  Q
    ||||| |||||||| ||||| |||||    
T  1778024 aagaaaggggttagaattgcctatat 1777999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 53703786 - 53703909
Alignment:
Q  14 atatcgaacggataaaaaag-acttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagag 112  Q
    |||||| |||||| |||||| |||||||||||||||||| ||||||||| |||||| |||||  || | || | ||||| |||||| |||||||||  ||    
T  53703786 atatcggacggatgaaaaaggacttgcacttagttttcactgatttggaaaaggcgtatgat-tgagtaccgagagaga-ttttgtggaaagccctgaag 53703883  T
Q  113 aagaagggggttaggattgcttatat 138  Q
    ||||| |||||||||||||| |||||    
T  53703884 aagaaaggggttaggattgcctatat 53703909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 27451278 - 27451156
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| |||||||||||||||||||| |||||||||| | |||||||||||||| | |||| || | | || ||||| |||||| |||| |||| ||||    
T  27451278 atatcggacggataaaaaagacttgcaattagttttcacttatttggagaaggcgtaggata-gagtacttagagaga-ttttgtggaaaaccctggaga 27451181  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| ||| | |||||||| |||||    
T  27451180 agaaagggatgaggattgcctatat 27451156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 2296364 - 2296403
Alignment:
Q  27 aaaaaagacttgcacttagttttcattgatttggagaagg 66  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2296364 aaaaaagacttgcacttagttttcattgatttggagaagg 2296403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 33369028 - 33369066
Alignment:
Q  23 ggataaaaaagacttgcacttagttttcattgatttgga 61  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33369028 ggataaaaaagacttgcacttagttttcattgatttgga 33369066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 1777963 - 1777892
Alignment:
Q  145 actagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    ||||||||||||||||| || ||| ||  ||| ||||||||||||| ||||||||||||| |||| ||||||    
T  1777963 actagtgtgaggacgtaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaacc 1777892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 55769478 - 55769365
Alignment:
Q  23 ggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaaggggg 122  Q
    |||||||||||||||||| ||  || |||||||||| || |||||| ||| || || | |||| | ||| |||||| |||||| ||||||||||| |||     
T  55769478 ggataaaaaagacttgcagttgattatcattgattttgataaggcgtatggta-gagtgcctagacaga-ttttgtggaaagctctagagaagaaaggga 55769381  T
Q  123 ttaggattgcttatat 138  Q
    ||||||||||||||||    
T  55769380 ttaggattgcttatat 55769365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 55833734 - 55833621
Alignment:
Q  23 ggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaaggggg 122  Q
    |||||||||||||||||| ||  || |||||||||| || |||||| ||| || || | |||| | ||| |||||| |||||| ||||||||||| |||     
T  55833734 ggataaaaaagacttgcagttgattatcattgattttgataaggcgtatggta-gagtgcctagacaga-ttttgtggaaagctctagagaagaaaggga 55833637  T
Q  123 ttaggattgcttatat 138  Q
    ||||||||||||||||    
T  55833636 ttaggattgcttatat 55833621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 435563 - 435637
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||||||||||||||| | || ||| ||  ||| ||||||||||||| ||||||| ||||| |||| ||||||    
T  435563 tcgactagtgtgaggacgcaagatgggactaccgaagattttcccataacaataggagtgcaccaagggtcaacc 435637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 23907253 - 23907179
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||||||||||||||| | || | | ||  ||| ||||||||||||| ||||||||||||| |||| ||||||    
T  23907253 tcgactagtgtgaggacgcaggatgagactaccgaagattttcccataacaataggattgcaccaagggtcaacc 23907179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 41598176 - 41598214
Alignment:
Q  23 ggataaaaaagacttgcacttagttttcattgatttgga 61  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  41598176 ggataaaagagacttgcacttagttttcaatgatttgga 41598214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 16002181 - 16002230
Alignment:
Q  10 aacaatatcgaacggataaaaaagacttgcacttagttttcattgatttg 59  Q
    |||||||| | |||||||||||| | || |||||||||||||||||||||    
T  16002181 aacaatattgcacggataaaaaaaaatttcacttagttttcattgatttg 16002230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 44860319 - 44860398
Alignment:
Q  45 gttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaagggggttagga 128  Q
    |||||||||||||||||| ||||| |||||||   | |||| | ||| |||||| ||||||| |||||||||| ||||||||||    
T  44860319 gttttcattgatttggaggaggcgtatgatag---tgcctagacaga-ttttgtggaaagccttagagaagaaaggggttagga 44860398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 36566346 - 36566224
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || |  | | ||||| |||||| ||||||||| ||||    
T  36566346 atatcggacggataaaaaagacttgcacttagttttcattgatttggaaaaggcgtatgata-gagtatcgagagaga-ttttgtggaaagccctggaga 36566249  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| |||||||||||||| |||||    
T  36566248 agaaaggggttaggattgcctatat 36566224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 36544336 - 36544438
Alignment:
Q  21 acggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaaggg 120  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||| |||||| || | || | | ||| |||||| ||||||||| |||||||| ||    
T  36544336 acggataaaaaagatttgcacttagttttcattgatttgga-aaggcgtatgata-gagtaccgagataga-ttttgtggaaagccctggagaagaaagg 36544432  T
Q  121 ggttag 126  Q
    ||||||    
T  36544433 ggttag 36544438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 6184837 - 6184887
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaa 64  Q
    |||||| || |||||||||||||| ||||||||||||||||||||||||||    
T  6184837 atatcggacagataaaaaagacttacacttagttttcattgatttggagaa 6184887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 15216376 - 15216314
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgatag 76  Q
    |||||||| ||||||||||||||| || |||||||||||||||||| | |||||| |||||||    
T  15216376 atatcgaatggataaaaaagacttacatttagttttcattgatttgaataaggcgtatgatag 15216314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 35094106 - 35094015
Alignment:
Q  30 aaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaagggggt 123  Q
    ||||| ||||| ||||||||||||||||||||||||| |  ||||| || | ||||||||||  ||||| |||||||||||||||||| |||||    
T  35094106 aaagagttgcatttagttttcattgatttggagaaggtgtgtgata-gaatgcctaaagaga-ctttgtggaaagccctagagaagaaaggggt 35094015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 42855105 - 42855056
Alignment:
Q  27 aaaaaagacttgcacttagttttcattgatttggagaaggcgaatgatag 76  Q
    ||||||||||| |||||||||||||||||||||||||||||  |||||||    
T  42855105 aaaaaagacttacacttagttttcattgatttggagaaggcatatgatag 42855056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 36544483 - 36544557
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||||||||||||||| | || ||| ||  ||| ||||||||||||| ||||||||||||| |||| ||||||    
T  36544483 tcgactagtgtgaggacgcaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaacc 36544557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 30579305 - 30579226
Alignment:
Q  36 ttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaa 117  Q
    |||||||||||||| ||| ||||||||||||||||| ||| || | |||| ||||| ||||||||||||| ||| |||||||    
T  30579305 ttgcacttagttttaattcatttggagaaggcgaatcata-gagtgcctagagaga-ttttgtcgaaagcactaaagaagaa 30579226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 45231873 - 45231786
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaa-cctaagctcttacc 228  Q
    |||||||||||||||||| |||| ||| |||| |||||||||   |||| ||||||||||||  |||| |||| ||||| ||||||||    
T  45231873 tcgactagtgtgaggacgcatgatggggcttttgacgatttttatataacaataggattgcattaagggtcaatcctaaactcttacc 45231786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 13983964 - 13984050
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacctaagctcttacc 228  Q
    |||||||||||||||||||| || ||| ||   |||||||||| |||||  ||| |||||||| |||||| | ||||||| ||||||    
T  13983964 tcgactagtgtgaggacgtaagatggggctactgacgattttctcataactatatgattgcaccaaggataaccctaagcacttacc 13984050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 25984736 - 25984789
Alignment:
Q  23 ggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgatag 76  Q
    |||| |||| ||||||||||| |||| ||||||||||||||||||  |||||||    
T  25984736 ggatcaaaaggacttgcacttggtttccattgatttggagaaggcatatgatag 25984789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 11131029 - 11130981
Alignment:
Q  27 aaaaaagacttgcacttagttttcattgatttggagaaggcgaatgata 75  Q
    |||||| |||||||  ||||||||||||||||||| |||||| ||||||    
T  11131029 aaaaaatacttgcatctagttttcattgatttggataaggcgtatgata 11130981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 32629785 - 32629907
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || | |||| ||||| |||||| |||||||||  |||    
T  32629785 atatcggacggataaaaaagacttacacttagttttcattgatttggagaaggcgtatgata-gagtacctagagaga-ttttgtggaaagccctgaaga 32629882  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| ||||| |||||||| |||||    
T  32629883 agaaaggggtgaggattgcctatat 32629907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 39907484 - 39907362
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| || |||||||||||||||||||||||||||||||||||||| |||||| |||||| || | || | ||||| |||||| ||||||||| ||||    
T  39907484 atatcggacagataaaaaagacttgcacttagttttcattgatttggaaaaggcgtatgata-gagtaccgagagaga-ttttgtggaaagccctggaga 39907387  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| |||||||||||||| |||||    
T  39907386 agaaaggggttaggattgcctatat 39907362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 36651171 - 36651293
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || | || | ||||| ||| || ||||||||| ||||    
T  36651171 atatcggacggataaaaaagacttgcacttagttttcattgatttggaaaaggcgtatgata-gagtaccgagagaga-tttcgtggaaagccctggaga 36651268  T
Q  114 agaagggggttaggattgcttatat 138  Q
    || | |||||||||||||| |||||    
T  36651269 agtaaggggttaggattgcctatat 36651293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 46356956 - 46356834
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||| |||||| |||||| || | || | ||||| |||||| ||||||||| ||||    
T  46356956 atatcggacgaataaaaaagacttgcacttagttttcattgatttggaaaaggcgtatgata-gagtaccgagagaga-ttttgtggaaagccctggaga 46356859  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| |||||||| ||||| |||||    
T  46356858 agaaaggggttagaattgcctatat 46356834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 22346689 - 22346751
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgatag 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  22346689 atatcgaacggataaaaaagacttgcacttagttttcattgatttggaaaaggcgtatgatag 22346751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 33350911 - 33350789
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||| |||| | |||||| || | || | ||||| |||||| ||||||||| ||||    
T  33350911 atatcggacggataaaaaagacttgcacttagttttctttgatttggaaaaggggtatgata-gagtaccgagagaga-ttttgtggaaagccctggaga 33350814  T
Q  114 agaagggggttaggattgcttatat 138  Q
    ||||  ||||||||||||| |||||    
T  33350813 agaaaagggttaggattgcctatat 33350789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 36870419 - 36870307
Alignment:
Q  24 gataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaagggggt 123  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||| |||||| || | |||| ||||| |||||| ||||||||| || || || |||||    
T  36870419 gataaaaaatacttgcacttaattttcattgatttggagaaggcgtatgata-gagtgcctagagaga-ttttgtggaaagccctggaaaataaaggggt 36870322  T
Q  124 taggattgcttatat 138  Q
    ||||||||| |||||    
T  36870321 taggattgcctatat 36870307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 38606216 - 38606337
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| |||||  || | |||  ||||| |||||| ||||||||| ||||    
T  38606216 atatcggacggataaaaaagacttacacttagttttcattgattttgagaaggcgtatgat--gagtacctggagaga-ttttgtggaaagccctggaga 38606312  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| ||| | |||||||| |||||    
T  38606313 agaaagggatgaggattgcctatat 38606337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 38896794 - 38896856
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgatag 76  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||| |||| | |||||||    
T  38896794 atatcggacggataaaaaagacttgcacttagttttcattaatttggaaaaggtgtatgatag 38896856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 48055912 - 48055808
Alignment:
Q  23 ggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaaggggg 122  Q
    |||| |||| ||||||||||||||||||||||||| ||||||||||  ||||| || | |||||||||| |||  | |||| ||||||||||||| ||||    
T  48055912 ggattaaaacgacttgcacttagttttcattgattcggagaaggcgtgtgata-gagtgcctaaagaga-tttcatggaaatccctagagaagaaagggg 48055815  T
Q  123 ttaggat 129  Q
    |||||||    
T  48055814 ttaggat 48055808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 49028612 - 49028686
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||||||||||||||||| || ||| ||  ||| ||||||||||||| ||||||||||||| |||| ||||||    
T  49028612 tcgactagtgtgaggacgtaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaacc 49028686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 11593154 - 11593252
Alignment:
Q  38 gcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaagggggttaggattgcttata 137  Q
    |||||||||||||||||||||||| |||||| |||||| || | || | ||||| ||||||   ||||||| |||||||| |||||||||||||| ||||    
T  11593154 gcacttagttttcattgatttggaaaaggcgtatgata-gagtaccgagagaga-ttttgtgacaagccctggagaagaaaggggttaggattgcctata 11593251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 17101590 - 17101539
Alignment:
Q  12 caatatcgaacggataaaaaagacttgcacttagttttcattgatttggaga 63  Q
    |||||||| | |||||||||||||||| ||||||||||||| ||||||||||    
T  17101590 caatatcggatggataaaaaagacttgtacttagttttcatcgatttggaga 17101539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 24178293 - 24178184
Alignment:
Q  21 acggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaaggg 120  Q
    ||||||| |||||  || || |||||||||||||||||||||| || | |||| || | | |||| ||||||||| || ||||||||| |||||||| ||    
T  24178293 acggatacaaaagggttacaattagttttcattgatttggagacggtgtatgacag-agtacctagagagatttt-gtggaaagccctggagaagaaagg 24178196  T
Q  121 ggttaggattgc 132  Q
    ||||||||||||    
T  24178195 ggttaggattgc 24178184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 32483659 - 32483701
Alignment:
Q  23 ggataaaaaagacttgcacttagttttcattgatttggagaag 65  Q
    |||||||||||||||||||||| |||||||||||||| |||||    
T  32483659 ggataaaaaagacttgcacttaattttcattgatttgtagaag 32483701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 33738422 - 33738384
Alignment:
Q  23 ggataaaaaagacttgcacttagttttcattgatttgga 61  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  33738422 ggataaaaaagacttgcacttaattttcattgatttgga 33738384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 11593284 - 11593358
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||||||||||||||| | || | | ||  ||| ||||||||||||| ||||||||||||| |||| ||||||    
T  11593284 tcgactagtgtgaggacgcaggatgagactaccgaagattttcccataacaataggattgcaccaagggtcaacc 11593358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 33350757 - 33350683
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    ||||||||||||| |||| | || ||| ||  ||| ||||||||||||| ||||||||||||| |||| ||||||    
T  33350757 tcgactagtgtgaagacgcaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaacc 33350683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 36651325 - 36651399
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||||||||||||||| | || ||| ||  ||| | ||||||||||| ||||||||||||| |||| ||||||    
T  36651325 tcgactagtgtgaggacgcaggatgggactaccgaagtttttcccataacaataggattgcaccaagggtcaacc 36651399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 46356802 - 46356728
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||||||||||||||| | || ||| ||  | | ||||||||||||| ||||||||||||| |||| ||||||    
T  46356802 tcgactagtgtgaggacgcaggatgggactaccaaagattttcccataacaataggattgcaccaagggtcaacc 46356728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 38896947 - 38897016
Alignment:
Q  147 tagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    ||||||||||||| | || ||| ||  ||| ||||||||||||| ||||||||||||| |||| ||||||    
T  38896947 tagtgtgaggacgcaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaacc 38897016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 52138005 - 52138127
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| || |||||||||||||||||||||||||||||||||||||| |||||| |||||| || | || | ||||| |||||| ||||||||| ||||    
T  52138005 atatcggacagataaaaaagacttgcacttagttttcattgatttggaaaaggcgtatgata-gagtaccgagagaga-ttttgtggaaagccctggaga 52138102  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| |||||||||||||| |||||    
T  52138103 agaaaggggttaggattgcctatat 52138127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 51448814 - 51448692
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || | || | ||||| |||||| ||||||||  ||||    
T  51448814 atatcggacggataaaaaagacttgcacttagttttcattgatttggaaaaggcgtatgata-gagtaccgagagaga-ttttgtggaaagcccgggaga 51448717  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| ||||||||| |||| |||||    
T  51448716 agaaaggggttaggtttgcctatat 51448692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 50630415 - 50630371
Alignment:
Q  23 ggataaaaaagacttgcacttagttttcattgatttggagaaggc 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  50630415 ggataaaaaagacttgcacttagttttcattgatttggagaaggc 50630371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 38849286 - 38849333
Alignment:
Q  21 acggataaaaaagacttgcacttagttttcattgatttggagaaggcg 68  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  38849286 acggataaaaaacacttacacttagttttcattgatttggagaaggcg 38849333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 48220971 - 48221008
Alignment:
Q  27 aaaaaagacttgcacttagttttcattgatttggagaa 64  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48220971 aaaaaagacttgcacttagttttcattgatttggagaa 48221008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 52138159 - 52138233
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||||||||||||||| | || ||| ||  ||| ||||||||||||| ||||| ||||||| |||||||||||    
T  52138159 tcgactagtgtgaggacgcaggatgggactaccgaagattttcccataacaatagaattgcaccaaggatcaacc 52138233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 3368954 - 3368989
Alignment:
Q  27 aaaaaagacttgcacttagttttcattgatttggag 62  Q
    |||||||||||||||||||||||| |||||||||||    
T  3368954 aaaaaagacttgcacttagttttctttgatttggag 3368989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 51448660 - 51448586
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||| ||||||||||| | || ||| ||  ||| ||||||||||||| ||||||||||||| |||| ||||||    
T  51448660 tcgactggtgtgaggacgcaggatgggactaccgaagattttcccataacaataggattgcaccaagggtcaacc 51448586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 52
Target Start/End: Complemental strand, 30724879 - 30724850
Alignment:
Q  23 ggataaaaaagacttgcacttagttttcat 52  Q
    ||||||||||||||||||||||||||||||    
T  30724879 ggataaaaaagacttgcacttagttttcat 30724850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 45368731 - 45368608
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| |||||||||||  |||| |||||||||||||||||||| ||||||||| |||||| || | |||| |||||||||||| ||||||||| ||||    
T  45368731 atatcggacggataaaaagaacttacacttagttttcattgattttgagaaggcgtatgata-gagtacctagagagatttttgtggaaagccctggaga 45368633  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| ||||| |||||||| |||||    
T  45368632 agaatggggtgaggattgcctatat 45368608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 452721 - 452599
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |||| || | || | ||||| |||||| ||||||||  ||||    
T  452721 atatcggacggataaaaaagacttgcacttagttttcattgatttggaaaaggcgtacgata-gagtaccgagagaga-ttttgtggaaagcccgggaga 452624  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| |||||||||||||| |||||    
T  452623 agaaaggggttaggattgcctatat 452599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 24584711 - 24584589
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| ||||||||||||||||| ||| || ||||||||||||||||||||||| |||||||  ||||| | ||||| |||||| |||| |||| ||||    
T  24584711 atatcggacggataaaaaagacttacacctaattttcattgatttggagaaggcgtatgatagagtttcc-agagaga-ttttgtggaaaaccctggaga 24584614  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| |||||||||||||| |||||    
T  24584613 agaaaggggttaggattgcctatat 24584589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 2609705 - 2609827
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || | |  | ||||| |||||| ||||||||  ||||    
T  2609705 atatcggacggataaaaaagacttgcacttagttttcattgatttggaaaaggcgtatgata-gagtgctgagagaga-ttttgtggaaagccccggaga 2609802  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| ||||| |||||||| |||||    
T  2609803 agaaaggggtaaggattgcctatat 2609827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 8179970 - 8180088
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagaga-tttttgtcgaaagccctagag 112  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||| ||| || |||||| || | || | |||||  |||||| ||||||||| |||    
T  8179970 atatcggacggataaaaaagacttgcacttggttttcattgatttggaaaagacgtatgata-gagtaccgagagagagattttgtggaaagccctggag 8180068  T
Q  113 aagaagggggttaggattgc 132  Q
    ||||| ||||||||||||||    
T  8180069 aagaaaggggttaggattgc 8180088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 14769486 - 14769538
Alignment:
Q  23 ggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgata 75  Q
    ||||||||||||||||||||| ||||||||||||||||||||| || ||||||    
T  14769486 ggataaaaaagacttgcacttggttttcattgatttggagaagacgtatgata 14769538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 452567 - 452493
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||||||||||||||| | || | | ||  ||| ||||||||||||| ||||||||||||| |||| ||||||    
T  452567 tcgactagtgtgaggacgcaggatgagactaccgaagattttcccataacaataggattgcaccaagggtcaacc 452493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 38453569 - 38453495
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||||||||||||||| | || |||  |  ||| ||||||||||||| ||||||||||||| |||| ||||||    
T  38453569 tcgactagtgtgaggacgcaggatgggattaccgaagattttcccataacaataggattgcaccaagggtcaacc 38453495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 9705952 - 9706068
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || | |||| ||||| |||||| |||||||||  |||    
T  9705952 atatcggacggataaaaaagacttacacttagttttcattgatttggagaaggcgtatgata-gagtacctagagaga-ttttgtggaaagccctgtaga 9706049  T
Q  114 agaagggggttaggattgc 132  Q
    |||| ||||| ||||||||    
T  9706050 agaaaggggtgaggattgc 9706068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 5260353 - 5260231
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| || | |||| ||||| ||| || |||||||||||| |    
T  5260353 atatcggacggataaaaaagacttacacttagttttcatcgatttggagaaggcgtatgata-gagtacctagagaga-tttagtggaaagccctagaaa 5260256  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| ||||| | ||||||||||||    
T  5260255 agaaaggggtgatgattgcttatat 5260231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 6082577 - 6082699
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||| |||| | |||||| || | || | ||||| |||||| ||||||||| ||||    
T  6082577 atatcggacggataaaaaggacttgcacttagttttcattgatttggaaaaggtgtatgata-gagtaccgagagaga-ttttgtggaaagccctggaga 6082674  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| |||||||||||||| |||||    
T  6082675 agaaaggggttaggattgcctatat 6082699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 20428742 - 20428620
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||| || | |||| ||||| |||||| ||||||||| ||||    
T  20428742 atatcggacggataaaaaagacttacacctagttttcattgatttgtagaaggcgtatgata-gagtacctagagaga-ttttgtggaaagccctggaga 20428645  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| ||||| |||||||| |||||    
T  20428644 agaaaggggtgaggattgcctatat 20428620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 2681534 - 2681479
Alignment:
Q  21 acggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgatag 76  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  2681534 acgggtaaaaaatacttgcacttagttttcattgatttggagaaggcgtatgatag 2681479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 2208496 - 2208385
Alignment:
Q  25 ataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaagggggtt 124  Q
    ||||||| |||||| ||||||||||||||||||||||||||| | ||||||| || | ||| ||||| |||| | ||||| |||||||||||| |  |||    
T  2208496 ataaaaacgacttgtacttagttttcattgatttggagaaggtgtatgatagaatgt-ctagagagactttt-tggaaaggcctagagaagaaagatgtt 2208399  T
Q  125 aggattgcttatat 138  Q
    || |||||||||||    
T  2208398 agaattgcttatat 2208385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 30670071 - 30670125
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcg 68  Q
    |||||| || || ||||||||||| ||||||||||||||||||||||||||||||    
T  30670071 atatcggacagagaaaaaagacttacacttagttttcattgatttggagaaggcg 30670125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 3629456 - 3629636
Alignment:
Q  27 aaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaagggggttag 126  Q
    ||||||||||| ||||||||||||||||||||| |||||||| ||||||  | | ||||  |||| |||||| |||| | | ||||||||| || |||||    
T  3629456 aaaaaagacttacacttagttttcattgatttgaagaaggcgtatgata-aagtacctatggaga-ttttgtggaaacctccagagaagaaaggagttag 3629553  T
Q  127 gattgcttatatgaatcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacct 217  Q
    |||| |||||||        ||||||||| ||| | ||  ||  |  ||||||||||||||||| ||||||||||||| |||| |||||||    
T  3629554 gatttcttatat--------tagtgtgagaacgcaagatagggttaccgacgattttcccataacaataggattgcactaagggtcaacct 3629636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 43241486 - 43241364
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||| || |||||| || | || | ||||| |||||| |||||| || ||||    
T  43241486 atatcggacggataaaaaagacttgcacttagttttcattgatttggaaaagacgtatgata-gagtaccgagagaga-ttttgtggaaagctctggaga 43241389  T
Q  114 agaagggggttaggattgcttatat 138  Q
    |||| |||||||||||||| |||||    
T  43241388 agaaaggggttaggattgcctatat 43241364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 29173627 - 29173512
Alignment:
Q  21 acggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaaggg 120  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| || | || | ||||  |||||| ||||| |||||||||||  ||    
T  29173627 acggataaaaaagacttgcacttagtttttattgatttggagaaggcgtatgata-gagtgccgagagag-gttttgtggaaaggcctagagaagagagg 29173530  T
Q  121 ggttaggattgcttatat 138  Q
    |||||||||||| |||||    
T  29173529 ggttaggattgcctatat 29173512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 8671095 - 8671205
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagaga 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || | || | ||||| |||||| |||||| || ||||    
T  8671095 atatcggacggataaaaaagacttgcacttagttttcattgatttggaaaaggcgtatgata-gagtaccgagagaga-ttttgtggaaagcactggaga 8671192  T
Q  114 agaagggggttag 126  Q
    |||| ||||||||    
T  8671193 agaaaggggttag 8671205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 49348507 - 49348453
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcg 68  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49348507 atatcggacggataaaaaagacttgcacttagttttcattgatttggaaaaggcg 49348453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 51441862 - 51441747
Alignment:
Q  21 acggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaaggg 120  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||| |||||||  | || |  ||||| |||||| ||||||||| ||||||||  |    
T  51441862 acggataaaaaagacttgcacttagttttcattgatttggaaaaagcgtatgatagagtatcgt-gagaga-ttttgtggaaagccctggagaagaaatg 51441765  T
Q  121 ggttaggattgcttatat 138  Q
    |||||| ||||| |||||    
T  51441764 ggttagaattgcctatat 51441747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 32405558 - 32405447
Alignment:
Q  24 gataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaagggggt 123  Q
    |||||||||||  ||||||||||||||||||||||||| || ||| |||||| || |  ||| ||||| |||||| ||||||| |||||||||| |||||    
T  32405558 gataaaaaagatgtgcacttagttttcattgatttgga-aaagcgtatgata-gagtgtctagagaga-ttttgtggaaagccatagagaagaaaggggt 32405462  T
Q  124 taggattgcttatat 138  Q
    ||| |||||||||||    
T  32405461 tagaattgcttatat 32405447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 34828179 - 34828068
Alignment:
Q  25 ataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaagggggtt 124  Q
    ||||||| |||| |||||||||||||||||||||| |||| | | ||||||   | || |||||||||||| || ||||| |||||||||||| | ||||    
T  34828179 ataaaaatgactcgcacttagttttcattgatttgaagaatgtgtatgatatagtgtc-taaagagatttt-gtggaaagtcctagagaagaaagaggtt 34828082  T
Q  125 aggattgcttatat 138  Q
    ||||||||||||||    
T  34828081 aggattgcttatat 34828068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 49348345 - 49348278
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaagg 209  Q
    |||||||||||||||||| |||| ||| ||  ||| ||||||||||||| ||||||||||||| ||||    
T  49348345 tcgactagtgtgaggacgcatgatgggactaccgaagattttcccataacaataggattgcaccaagg 49348278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 43241332 - 43241258
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||||||||||||||| | || ||| ||  ||| ||||||||||||| ||||||||||||| |||| ||||||    
T  43241332 tcgactagtgtgaggacgcacgatgggactaccgaagattttcccataacaataggattgcaccaagggtcaacc 43241258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 29173480 - 29173419
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgca 203  Q
    |||||||||||||||||| |||| ||| ||  ||| ||||||||||||| ||||||||||||    
T  29173480 tcgactagtgtgaggacgcatgatggggctaccgaagattttcccataacaataggattgca 29173419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 35829312 - 35829272
Alignment:
Q  174 cgacgattttcccataaaaataggattgcacgaaggatcaa 214  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  35829312 cgacgattttcccataacaataggattgcaccaaggatcaa 35829272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 37463810 - 37463726
Alignment:
Q  145 actagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaa-cctaagctcttacc 228  Q
    ||||||||||||| | | |||||||||  ||| |||||||| |||| ||||||||||||| |||| |||| ||||||| ||||||    
T  37463810 actagtgtgaggatgcaggaggggcctaccgatgattttcctataacaataggattgcaccaagggtcaaccctaagcccttacc 37463726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 8671252 - 8671314
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcac 204  Q
    |||||||||||||||||| | || ||| || |||| ||||||||||||| ||||| |||||||    
T  8671252 tcgactagtgtgaggacgcaggatgggactatcgaagattttcccataacaatagaattgcac 8671314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 35829485 - 35829443
Alignment:
Q  25 ataaaaaagacttgcacttagttttcattgatttggagaaggc 67  Q
    ||||||||||  | |||||||||||||||||||||||||||||    
T  35829485 ataaaaaagatatacacttagttttcattgatttggagaaggc 35829443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 51441715 - 51441641
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||| ||||||||||||| | || ||| ||  ||| ||||||||||||| ||||||||||||| |||| ||||||    
T  51441715 tcgattagtgtgaggacgcaagatgggactaccgaagattttcccataacaataggattgcaccaagggtcaacc 51441641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 37463878 - 37463846
Alignment:
Q  105 ccctagagaagaagggggttaggattgcttata 137  Q
    ||||||||||||| |||||||||||||||||||    
T  37463878 ccctagagaagaaaggggttaggattgcttata 37463846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 13356 - 13241
Alignment:
Q  21 acggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaaggg 120  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||| |||||| || |||||| ||||| |||||| ||||| ||| |||||||| |     
T  13356 acggataataaagacttacacttagttttcattgatttggagaaggcgtatgata-gagttcctagagaga-ttttgtggaaagtcctggagaagaacga 13259  T
Q  121 ggttaggattgcttatat 138  Q
    ||||| |||||| |||||    
T  13258 ggttaagattgcctatat 13241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 13207 - 13133
Alignment:
Q  142 tcgactagtgtgaggacgtatgaggggcctttcgacgattttcccataaaaataggattgcacgaaggatcaacc 216  Q
    |||||||||||||||||| | || ||| ||  ||| ||||||||||||| ||||||||||||| |||| ||||||    
T  13207 tcgactagtgtgaggacgcaagatgggactaccgaagattttcccataacaataggattgcaccaagggtcaacc 13133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 90194 - 90133
Alignment:
Q  15 tatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgatag 76  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  90194 tatcggacggataaaaaagacttacacttagttttcattgatttggagaaggcgtatgatag 90133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 30652 - 30767
Alignment:
Q  21 acggataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaaggg 120  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| || | || | ||||| |||||| ||||||||   ||||||| ||    
T  30652 acggataaaaaagacttgcacttagttttcattgaattggaaaaggcgtatgata-gagtaccgagagaga-ttttgtggaaagccccgaagaagaaagg 30749  T
Q  121 ggttaggattgcttatat 138  Q
    |||||||||||| |||||    
T  30750 ggttaggattgcctatat 30767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 138
Target Start/End: Complemental strand, 595 - 484
Alignment:
Q  25 ataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgataggatttcctaaagagatttttgtcgaaagccctagagaagaagggggtt 124  Q
    ||||||| |||||| ||||||||||||||||||||||||||| | ||||||| || | ||| ||||| |||| | ||||| |||||||||||| |  |||    
T  595 ataaaaacgacttgtacttagttttcattgatttggagaaggtgtatgatagaatgt-ctagagagactttt-tggaaaggcctagagaagaaagatgtt 498  T
Q  125 aggattgcttatat 138  Q
    || |||||||||||    
T  497 agaattgcttatat 484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 25314 - 25271
Alignment:
Q  14 atatcgaacggataaaaaagacttgcacttagttttcattgatt 57  Q
    ||||| ||| |||||||||||||||||| |||||||||||||||    
T  25314 atatcaaacagataaaaaagacttgcacctagttttcattgatt 25271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 5634 - 5685
Alignment:
Q  24 gataaaaaagacttgcacttagttttcattgatttggagaaggcgaatgata 75  Q
    ||||||||| | | |||||||||||||||| |||||||||||||| ||||||    
T  5634 gataaaaaacaatcgcacttagttttcatttatttggagaaggcgtatgata 5685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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