View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5973_low_2 (Length: 624)
Name: NF5973_low_2
Description: NF5973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5973_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 19 - 607
Target Start/End: Complemental strand, 413946 - 413353
Alignment:
| Q |
19 |
gccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttcctagtattctcattacttgtttcatcaaacttttttg |
118 |
Q |
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| T |
413946 |
gccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttcctagtattcttattacttatttcatcaaactttttcg |
413847 |
T |
|
| Q |
119 |
aggcttgaagttcccctgccaatgcctcctgctcaagagggtcactttctgcatcaaaattattttgttcagccatttgatttgaaccattggacaatga |
218 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
413846 |
aggcttgaatttcccctgccaatgcctcctgctcaagagggtcactttctgtttcaaaattattttgttcagccatttgatttgaaccattggacaatga |
413747 |
T |
|
| Q |
219 |
catttcagcctcacctagttcctccaccttcactggtatagctaccattgaattttccacattttcagcatcatgtcccaaatctggttccactgtgaga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
413746 |
catttcagcctcacctagttcctccaccttcactggtatagctaccattgaattttccacattttcagcatcatgtcccaaatctggttccagtgtgaga |
413647 |
T |
|
| Q |
319 |
ggatgagaaactgctactaggcatcttgaacaggattgtacttgatcaaaacctgctccttgaacttgatatgcctgcaccaaatctcatattaaaaatt |
418 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
413646 |
ggatgagaaactgctactaggtatcttgaacaggattgtacttgatcaaaacctgctccttgaacttgatatgcctgcaccaaatctcatattaaaaatt |
413547 |
T |
|
| Q |
419 |
ccatatatgcatatagttactctctctacaatgatataaaactataactcatagattttgatgaattttggcagaac-----attgcactaaaaaactaa |
513 |
Q |
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| T |
413546 |
ccatatatgcatatagttactctctctacaatgatataaaactataactcatagattttgatgaattttggcagaacattatattgcactaaaaaactaa |
413447 |
T |
|
| Q |
514 |
gataaaatggatgttattccatacagaattgatagtgttggatcgatcatcaggttgttggttgccatcagaagcagaagactgttctcttgag |
607 |
Q |
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| T |
413446 |
gataaaatggatgttattccatacagaattgatagtgttggatcgatcatcaggttgttggttgccatcagaagcagaagactgttctcttgag |
413353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 1e-58; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 20 - 404
Target Start/End: Original strand, 37202906 - 37203281
Alignment:
| Q |
20 |
ccattgcagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttcctagtattctcattacttgtttcatcaaacttttttga |
119 |
Q |
| |
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||||| |||||||||| || ||||| || ||||| |||||||| |||||||||||||||||| | || ||| ||| |||||| | | ||| |
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| T |
37202906 |
ccatttcagttagttttagactaaaagatggggacgaacatccttcccttgaaatacacttccga---------tttgttgcttcctcaaacctatgtga |
37202996 |
T |
|
| Q |
120 |
ggcttgaagttcccctgccaatgcctcctgctcaagagggtcactttctgcatcaaaattattttgttcagccatttgatttgaaccattggacaatgac |
219 |
Q |
| |
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|||||||| |||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||||||||| |||||||||||| | |||||||||| |
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| T |
37202997 |
ggcttgaatttcccctgccaatggctcctgctcaagaggtacactttctgcttcaaatgtattttgttcagctatttgatttgaatgactggacaatgaa |
37203096 |
T |
|
| Q |
220 |
atttcagcctcacctagttcctccaccttcactggtatagctaccattgaattttccacattttcagca---tcatgtcccaaatctggttccactgtga |
316 |
Q |
| |
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|||||||||||||||| | || ||||||| |||| || |||| ||||||||||| |||| ||||||| |||| | |||| |||||||||||| ||| |
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| T |
37203097 |
atttcagcctcacctaatacccccacctt---tggtgtacctactattgaattttcaacatcttcagcatcttcattttccaactctggttccactatga |
37203193 |
T |
|
| Q |
317 |
gaggatgagaaactgctactaggcatcttgaacaggattgtacttgatcaaaacctgctccttgaacttgatatgcctgcaccaaatc |
404 |
Q |
| |
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||||||| ||||| ||||||| ||||||| ||||| |||||||||||| ||| || || ||||||||||||||||||||||||| |
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| T |
37203194 |
caggatgaagaactgatactaggtatcttgatggggattctacttgatcaaacccttcttctggaacttgatatgcctgcaccaaatc |
37203281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 188 - 409
Target Start/End: Original strand, 37184054 - 37184278
Alignment:
| Q |
188 |
cagccatttgatttgaaccattggacaatgacatttcagcctcacctagttcctccaccttcactggtatagctaccattgaattttccacattttcagc |
287 |
Q |
| |
|
||||||||| ||||||| || ||| |||||||||||||||||||||| ||| ||| ||| | |||||| || | |||||||||| ||||||||||| |
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| T |
37184054 |
cagccattttatttgaattatgggagaatgacatttcagcctcacctaattctcccatattctcaggtatacctcctgttgaattttcaacattttcagc |
37184153 |
T |
|
| Q |
288 |
atc---atgtcccaaatctggttccactgtgagaggatgagaaactgctactaggcatcttgaacaggattgtacttgatcaaaacctgctccttgaact |
384 |
Q |
| |
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|| ||| |||| |||||||||| ||||||||||| | |||| ||||||| ||||||| ||||| |||||||||| ||||| || || ||||| |
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| T |
37184154 |
ctctttatgctccaactctggttccattgtgagaggataaacaacttgtactaggtatcttgacatggattctacttgatcagaaccttcttctggaact |
37184253 |
T |
|
| Q |
385 |
tgatatgcctgcaccaaatctcata |
409 |
Q |
| |
|
|||| ||||| |||||||||||||| |
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|
| T |
37184254 |
tgatttgcctacaccaaatctcata |
37184278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 188 - 409
Target Start/End: Original strand, 37195186 - 37195410
Alignment:
| Q |
188 |
cagccatttgatttgaaccattggacaatgacatttcagcctcacctagttcctccaccttcactggtatagctaccattgaattttccacattttcagc |
287 |
Q |
| |
|
||||||||| ||||||| || ||| |||||||||||||||||||||| ||| ||| ||| | |||||| || | |||||||||| ||||||||||| |
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| T |
37195186 |
cagccattttatttgaattatgggagaatgacatttcagcctcacctaattctcccatattctcaggtatacctcctgttgaattttcaacattttcagc |
37195285 |
T |
|
| Q |
288 |
atc---atgtcccaaatctggttccactgtgagaggatgagaaactgctactaggcatcttgaacaggattgtacttgatcaaaacctgctccttgaact |
384 |
Q |
| |
|
|| ||| |||| |||||||||| ||||||||||| | |||| ||||||| ||||||| ||||| |||||||||| ||||| || || ||||| |
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| T |
37195286 |
ctctttatgctccaactctggttccattgtgagaggataaacaacttgtactaggtatcttgacatggattctacttgatcagaaccttcttctggaact |
37195385 |
T |
|
| Q |
385 |
tgatatgcctgcaccaaatctcata |
409 |
Q |
| |
|
|||| ||||| |||||||||||||| |
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|
| T |
37195386 |
tgatttgcctacaccaaatctcata |
37195410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 37212282 - 37212350
Alignment:
| Q |
27 |
agttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttcctagtattctcatt |
95 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||| || ||||||||| |
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| T |
37212282 |
agttagtttgaggctaaaggatggggatgaacatccagtccttgaaatacacttcatatgattctcatt |
37212350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 447 - 594
Target Start/End: Original strand, 37203345 - 37203487
Alignment:
| Q |
447 |
caatgatataaaactataactcatagattttgatgaattttggcagaacattgcactaaaaaactaagataaaatggatgttattccatacagaattgat |
546 |
Q |
| |
|
||||| || ||||||| |||||| ||| ||||||||| ||||||||| |||||| ||||||||| |||||| ||||||||| |||||||||||||| |
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|
| T |
37203345 |
caatggtagaaaactagaactca--gatgttgatgaatgttggcagaaaattgcattaaaaaactt---taaaatagatgttatttcatacagaattgat |
37203439 |
T |
|
| Q |
547 |
agtgttggatcgatcatcaggttgttggttgccatcagaagcagaaga |
594 |
Q |
| |
|
|||| || | ||| || ||| ||||||||| |||||| |||||||| |
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|
| T |
37203440 |
tgtgtcggcttgatgattaggctgttggttgtcatcaggggcagaaga |
37203487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 37183841 - 37183896
Alignment:
| Q |
26 |
cagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttc |
81 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||||||||||||||||| ||||| |
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|
| T |
37183841 |
cagttagtttgaggctaaaagatggggatagacatccagcccttgaaatagacttc |
37183896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 37194973 - 37195028
Alignment:
| Q |
26 |
cagttagtttgaggctaaaggacggggatgaacatccagcccttgaaatacacttc |
81 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||||||||||||||||| ||||| |
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|
| T |
37194973 |
cagttagtttgaggctaaaagatggggatagacatccagcccttgaaatagacttc |
37195028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 477 - 530
Target Start/End: Original strand, 37184359 - 37184412
Alignment:
| Q |
477 |
tgatgaattttggcagaacattgcactaaaaaactaagataaaatggatgttat |
530 |
Q |
| |
|
|||||||| ||||||||| |||| |||||||||||||||| |||| |||||||| |
|
|
| T |
37184359 |
tgatgaatgttggcagaaaattgaactaaaaaactaagatgaaatagatgttat |
37184412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 607
Target Start/End: Original strand, 37184439 - 37184519
Alignment:
| Q |
527 |
ttattccatacagaattgatagtgttggatcgat-catcaggttgttggttgccatcagaagcagaagactgttctcttgag |
607 |
Q |
| |
|
||||| |||||||||||||| ||||||| | ||| ||||| |||||||| ||| |||||| | |||||| |||||||||||| |
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| T |
37184439 |
ttatttcatacagaattgattgtgttggct-gatacatcaagttgttggatgctatcagatgaagaagaatgttctcttgag |
37184519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 407
Target Start/End: Complemental strand, 5364818 - 5364706
Alignment:
| Q |
295 |
cccaaatctggttccactgtgagaggatgagaaactgctactaggcatcttgaacaggattgtacttgatcaaaacctgctccttgaacttgatatgcct |
394 |
Q |
| |
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||||||| ||||| || |||||||||||||| |||| |||| || |||||| ||||||||||||||| ||||| | || |||||||||||||| |
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|
| T |
5364818 |
cccaaatttggttacaatgtgagaggatgagcaacttgtactggggctcttgatggcgattgtacttgatcacaaccttccttttcaacttgatatgcct |
5364719 |
T |
|
| Q |
395 |
gcaccaaatctca |
407 |
Q |
| |
|
|| ||||||||| |
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|
| T |
5364718 |
acatcaaatctca |
5364706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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