View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5973_low_4 (Length: 575)
Name: NF5973_low_4
Description: NF5973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5973_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 286 - 559
Target Start/End: Complemental strand, 32664373 - 32664100
Alignment:
| Q |
286 |
aatagaagcaaatttaccttgatgattatgatatttgaccactttttctcacgaataatcaatgtatcgttggcatattgtaagtgtgtgaacatgtctt |
385 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32664373 |
aatagaagcaaatttaccttgatgattctgatatttgaccactttttctcacgaataatcaatgtatcgttggcatattgtaagtttgtgaacatgtctt |
32664274 |
T |
|
| Q |
386 |
cctccatgtcaaatctgtatactgtcaattttccctcctccattgccctcctcatcaacatattgaagctttccgccgctattagataaaggaatgacga |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32664273 |
cctccatgtcaaatctgtatactgtcaattttccctcctccattgccctcctcatcaacatattgaagctttccgccactattagataaaggaatgacga |
32664174 |
T |
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| Q |
486 |
caacgtacctccttgctagtataaatgatagagtcattacattgtacttcctcgagaatgaaatataaacaaaa |
559 |
Q |
| |
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||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32664173 |
caacgcacctccttgctagtataaatggtagagtcattacattgtacttcctctagaatgaaatataaacaaaa |
32664100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 32668825 - 32668553
Alignment:
| Q |
16 |
aagactgattttattagaacgatttgacctacaatgggcaattgtttattcttccacttcaacaatcttgatccgacagcctcaatcactggatgccaag |
115 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
32668825 |
aagactaattttattagaacgattcgacctacaatgggcaattgtttattcttccacttcaacaatgttgatctgacagcctcaatcactggatgccaag |
32668726 |
T |
|
| Q |
116 |
tatctaatatcctcagatttgctttgattggtaaaccaagttacttaaacagagtaaatcctattttacattttaatacattagccgcctctcccaccca |
215 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32668725 |
tatctaatatcctcagatttgctctgattggtaaaccaagttacttaaacagagtaaatcctattttacattttaatacattagccgcctctcccaccca |
32668626 |
T |
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| Q |
216 |
cctctcgaatatattgactccgactaataaacttttatgaaagttcactcacagacccgatattacctcaaat |
288 |
Q |
| |
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||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32668625 |
cctctgggatatattgactccgactaataaacttttatgaaagttcactcatagacccgatattacctcaaat |
32668553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 27119878 - 27119947
Alignment:
| Q |
302 |
ccttgatgattatgatatttgaccactttttctcacgaataatcaatgtatcgttggcatattgtaagtg |
371 |
Q |
| |
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|||| |||||||||||||| |||||||||| |||| |||||||||||| |||| ||||||||||||| |
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| T |
27119878 |
ccttaatgattatgatattctaccactttttttcaccaataatcaatgtgtcgtctacatattgtaagtg |
27119947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 16 - 487
Target Start/End: Original strand, 23703134 - 23703605
Alignment:
| Q |
16 |
aagactgattttattagaacgatttgacctacaatgggcaattgtttattcttccacttcaacaatcttgatccgacagcctcaatcactggatgccaag |
115 |
Q |
| |
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||||||||||||||||||| || | |||| ||||| ||| || |||||||||||||||||||||||||||| ||||||||||||| | ||| | | |
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| T |
23703134 |
aagactgattttattagaatgactctacctccaatgcacaaatgattattcttccacttcaacaatcttgatctcctagcctcaatcactagttgctatg |
23703233 |
T |
|
| Q |
116 |
tatctaatatcctcagatttgctttgattggtaaaccaagttacttaaacagagtaaatcctattttacattttaatacattagccgcctctcccaccca |
215 |
Q |
| |
|
|||||||| |||| |||||||| || ||||||||||| |||||||| |||||| ||| ||||||||| |||| || ||||| |||||| ||||||| |
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|
| T |
23703234 |
tatctaatctcctaggatttgctccaataggtaaaccaagatacttaaatagagtacatcatattttacaatttaggactttagctgcctcttccaccca |
23703333 |
T |
|
| Q |
216 |
cctctcgaatatattgactccgactaataaacttttatgaaagttcactcacagacccgatattacctcaaatagaagcaaatttaccttgatgattatg |
315 |
Q |
| |
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|| | ||||||||||||| || ||| |||||||||||||||| ||| ||||| | ||||| ||||| ||||| |||||| |||| | ||| || |
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| T |
23703334 |
tctttgtgatatattgactcccaccaatgaacttttatgaaagttgacttttagaccaaacattacttcaaaaagaagtaaatttgcctttttaattttg |
23703433 |
T |
|
| Q |
316 |
atatttgaccactttttctcacgaataatcaatgtatcgttggcatattgtaagtgtgtgaacatgtcttcctccatgtcaaatctgtatactgtcaatt |
415 |
Q |
| |
|
||||| |||||||||| |||| ||||||||||||||||| |||||||||| ||||| | | ||||||| || |||||||| ||||| |||| |||| |
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| T |
23703434 |
atattcaaccactttttttcactaataatcaatgtatcgtcatcatattgtaaatgtgttagccggtcttcccccttgtcaaatatgtattctgtgaatt |
23703533 |
T |
|
| Q |
416 |
ttccctcctccattgccctcctcatcaacatattgaagctttccgccgctattagataaaggaatgacgaca |
487 |
Q |
| |
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|||||||||||| |||| |||||||||||||||| |||| ||| || | |||| ||||||||| ||||||| |
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| T |
23703534 |
ttccctcctccactgccatcctcatcaacatattaaagccttctgctacaattaaataaaggaacgacgaca |
23703605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 21 - 488
Target Start/End: Complemental strand, 39294408 - 39293940
Alignment:
| Q |
21 |
tgattttattagaacgatttgacctacaatgggcaattgtttattcttccacttcaacaatcttgatccgacagcctcaatcactggatgccaagtatct |
120 |
Q |
| |
|
||||||||||| ||||| | ||||| |||| | || |||||||||||||||||| |||||||||| | || ||||||||||||||||||||||||| | |
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| T |
39294408 |
tgattttattaaaacgactagaccttcaatagacagttgtttattcttccactttgacaatcttgacctcactgcctcaatcactggatgccaagtattt |
39294309 |
T |
|
| Q |
121 |
aatatcctcagatttgctttgattggtaaaccaagttacttaaacagagtaaatcctattttacattttaatacattagccgcctctcccacccacctct |
220 |
Q |
| |
|
| |||| || || ||||| |||||||||||||| |||||||||| ||| ||||||||||||| |||| | ||| | ||||||| || | |||||| |
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|
| T |
39294308 |
attatcgtcggacttgctccgattggtaaaccaatgtacttaaacatagtggatcctattttacaatttaggatattggtcgcctcttcctactacctct |
39294209 |
T |
|
| Q |
221 |
cgaatatattgactccgactaataaacttttatgaaagttcactcacagacccgatattacctcaaatagaagcaaatttaccttgatgattatgatatt |
320 |
Q |
| |
|
| ||| ||||||| | |||||||||||||| | | | | |||||| | ||||| ||||||| | || |||| |||| |||||| ||||| |
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| T |
39294208 |
gagagataatgactcccatcgataaacttttatgagaactgatttttagacccaacattacttcaaataataacatatttgccttaatgattcgaatatt |
39294109 |
T |
|
| Q |
321 |
tgaccactttttctcacgaataatcaatgtatcgttggcatattgtaagtgtgtgaacatgtcttcctccatgtcaaatctgtatactgtcaatt-ttcc |
419 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| | ||| |||| ||| || ||||| | |||||| ||||||||||| ||||| |||| |||| || |
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|
| T |
39294108 |
cgaccactttttctcaccaataatcaagttatcatcggcgtattctaaatgagtgaaaagatcttcccccatgtcaaatttgtatcctgtgaattgcccc |
39294009 |
T |
|
| Q |
420 |
ctcctccattgccctcctcatcaacatattgaagctttccgccgctattagataaaggaatgacgacaa |
488 |
Q |
| |
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| |||||| | | ||||||||||||||||||||| |||||| ||||||||| ||||||| |||||||| |
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| T |
39294008 |
cacctccactactctcctcatcaacatattgaagtcttccgctgctattagaaaaaggaacgacgacaa |
39293940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 22639055 - 22639143
Alignment:
| Q |
33 |
aacgatttgacctacaatgggcaattgtttattcttccacttcaacaatcttgatccgacagcctcaatcactggatgccaagtatcta |
121 |
Q |
| |
|
||||| ||||||| |||| ||| ||||||||||||||||| ||||||||||||| | |||| ||||||| | ||||| ||||||| |
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|
| T |
22639055 |
aacgaattgacctcaaatgaacaagtgtttattcttccacttagacaatcttgatcctagtgccttaatcactagctgccatgtatcta |
22639143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 29122143 - 29122255
Alignment:
| Q |
108 |
atgccaagtatctaatatcctcagatttgctttgattggtaaaccaagttacttaaacagagtaaatcctattttacattttaatacattagccgcctct |
207 |
Q |
| |
|
|||||| ||||||||| || || |||||||| || ||||||||||| ||||||||| || || || || ||||| ||||| | ||||||||||||| |
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|
| T |
29122143 |
atgccatgtatctaatctcttcggatttgctccaatcggtaaaccaaggtacttaaacggaaagaaaccaatcttacaatttaaaatattagccgcctct |
29122242 |
T |
|
| Q |
208 |
cccacccacctct |
220 |
Q |
| |
|
||| |||||||| |
|
|
| T |
29122243 |
tccaaccacctct |
29122255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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