View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5973_low_7 (Length: 411)

Name: NF5973_low_7
Description: NF5973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5973_low_7
NF5973_low_7
[»] chr7 (7 HSPs)
chr7 (1-394)||(4571617-4572013)
chr7 (1-151)||(4591171-4591321)
chr7 (5-144)||(4599860-4599999)
chr7 (1-151)||(4583647-4583797)
chr7 (15-101)||(4604490-4604576)
chr7 (311-349)||(25432167-25432205)
chr7 (366-394)||(25002981-25003009)
[»] chr5 (4 HSPs)
chr5 (311-356)||(17823647-17823692)
chr5 (311-352)||(15531387-15531428)
chr5 (309-350)||(43233924-43233965)
chr5 (311-355)||(21254242-21254286)
[»] chr4 (2 HSPs)
chr4 (311-356)||(20880038-20880083)
chr4 (307-351)||(21215018-21215062)
[»] chr6 (1 HSPs)
chr6 (310-349)||(1136227-1136266)
[»] chr8 (2 HSPs)
chr8 (310-348)||(5690859-5690897)
chr8 (311-355)||(13856765-13856809)
[»] chr3 (2 HSPs)
chr3 (311-349)||(19954451-19954489)
chr3 (310-355)||(10661755-10661800)
[»] chr1 (2 HSPs)
chr1 (311-351)||(2427329-2427369)
chr1 (363-391)||(24962232-24962260)


Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 4572013 - 4571617
Alignment:
Q  1 ggactggcaagtgctgaaaatatggtgaagtatgtagaacaacatccatttggtcaagaacggatcactgaaacaaatgaattttgggatttttacctca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4572013 ggactggcaagtgctgaaaatatggtgaagtatgtagaacaacatccatttggtcaagaacggatcactgaaacaaatgaattttgggatttttacctca 4571914  T
Q  101 atgttatcaatagtatttctgcttgtcaacctgaaaagtgaaaacatggttgcatatttgatgcccca-tttgagtaatgtttttctctttttggattac 199  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  4571913 atgttatcaatagtatttctgcttgtcaacctgaaaagtgaagacatggttgcatatttgatgccccattttgagtaatgtttttctctttttggatcac 4571814  T
Q  200 atgtacaagggctaaagaaatttgcag-aaaaaatttcataaattaatttgctagattgttttgtgattacatatctatattgttcctaaattgaacagc 298  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4571813 atgtacaaggactaaagaaatttgcagaaaaaaatttcataaattaatttgctagattgttttgtgattacatatctatattgttcctaaattgaacagc 4571714  T
Q  299 tgtgtactattt-tgttatgaaacatgacattcatggaaggaatgagagaaaagtaacttaactatttggctaaactgtacttttcgccccctaagt 394  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||  |||||||    
T  4571713 tgtgtactatttgtgttatgaaacatgacattcatggaaggaatgagagaaaagtaacttaactatttggctaaactgcatttttcgcttcctaagt 4571617  T

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Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 4591321 - 4591171
Alignment:
Q  1 ggactggcaagtgctgaaaatatggtgaagtatgtagaacaacatccatttggtcaagaacggatcactgaaacaaatgaattttgggatttttacctca 100  Q
    |||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||| || |||||||    
T  4591321 ggactggcaaatgctgaaaatatgtcgaagtatgtagaacaacatccatttggtcaagaacgtatcgctgaaacaaatgaatcttgggacttctacctca 4591222  T
Q  101 atgttatcaatagtatttctgcttgtcaacctgaaaagtgaaaacatggtt 151  Q
    |||||||||||||| |||||| ||||||||||||||||| |||||||||||    
T  4591221 atgttatcaatagtctttctgtttgtcaacctgaaaagtaaaaacatggtt 4591171  T

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Target: chr7; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 4599999 - 4599860
Alignment:
Q  5 tggcaagtgctgaaaatatggtgaagtatgtagaacaacatccatttggtcaagaacggatcactgaaacaaatgaattttgggatttttacctcaatgt 104  Q
    |||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| || ||||  ||||||||| |||||||||||    
T  4599999 tggcaaatgctgaaaatatgttgatgtatgtagaacaacatccatttggtcaagaacgtatcactgaaaaaagtgaagcttgggatttctacctcaatgt 4599900  T
Q  105 tatcaatagtatttctgcttgtcaacctgaaaagtgaaaa 144  Q
     ||||||||| ||||| ||||||||||| | |||||||||    
T  4599899 gatcaatagtctttctacttgtcaacctaagaagtgaaaa 4599860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 4583797 - 4583647
Alignment:
Q  1 ggactggcaagtgctgaaaatatggtgaagtatgtagaacaacatccatttggtcaagaacggatcactgaaacaaatgaattttgggatttttacctca 100  Q
    |||||||||| |||||||||||||  || ||||||||||||||||||||||||||||||||  ||||||||||| |  |||| |||||| || ||| |||    
T  4583797 ggactggcaactgctgaaaatatgaagacgtatgtagaacaacatccatttggtcaagaacatatcactgaaaccagcgaatcttgggacttctacttca 4583698  T
Q  101 atgttatcaatagtatttctgcttgtcaacctgaaaagtgaaaacatggtt 151  Q
    ||||| ||| |||| ||| ||||| |||| || ||||| ||||| ||||||    
T  4583697 atgttttcattagtctttatgcttatcaatctaaaaagagaaaatatggtt 4583647  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 4604576 - 4604490
Alignment:
Q  15 tgaaaatatggtgaagtatgtagaacaacatccatttggtcaagaacggatcactgaaacaaatgaattttgggatttttacctcaa 101  Q
    |||| |||||||||||||||||||  | || |||  ||||||| | || |||| |||||||||||||| |||||| |||||||||||    
T  4604576 tgaagatatggtgaagtatgtagagaagcacccacatggtcaaaagcgtatcagtgaaacaaatgaatcttgggacttttacctcaa 4604490  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 349
Target Start/End: Complemental strand, 25432205 - 25432167
Alignment:
Q  311 tgttatgaaacatgacattcatggaaggaatgagagaaa 349  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  25432205 tgttatgaaacatggcatccatggaaggaatgagagaaa 25432167  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 394
Target Start/End: Complemental strand, 25003009 - 25002981
Alignment:
Q  366 ggctaaactgtacttttcgccccctaagt 394  Q
    |||||||||||||||||||||||||||||    
T  25003009 ggctaaactgtacttttcgccccctaagt 25002981  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 17823692 - 17823647
Alignment:
Q  311 tgttatgaaacatgacattcatggaaggaatgagagaaaagtaact 356  Q
    |||||||| ||||| ||||||||||||||||||||||||| |||||    
T  17823692 tgttatgagacatgccattcatggaaggaatgagagaaaaataact 17823647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 352
Target Start/End: Original strand, 15531387 - 15531428
Alignment:
Q  311 tgttatgaaacatgacattcatggaaggaatgagagaaaagt 352  Q
    |||||||||||| ||||||||| |||| ||||||||||||||    
T  15531387 tgttatgaaacacgacattcatagaagaaatgagagaaaagt 15531428  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 43233965 - 43233924
Alignment:
Q  309 tttgttatgaaacatgacattcatggaaggaatgagagaaaa 350  Q
    ||||||| |||||||| ||| |||||||||||||||||||||    
T  43233965 tttgttaggaaacatggcatccatggaaggaatgagagaaaa 43233924  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 21254286 - 21254242
Alignment:
Q  311 tgttatgaaacatgacattcatggaaggaatgagagaaaagtaac 355  Q
    ||||| |||||||| ||| ||||||||||| ||||||||||||||    
T  21254286 tgttaggaaacatggcatccatggaaggaaggagagaaaagtaac 21254242  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 356
Target Start/End: Original strand, 20880038 - 20880083
Alignment:
Q  311 tgttatgaaacatgacattcatggaaggaatgagagaaaagtaact 356  Q
    ||||||||| ||||| || |||||||||||||||||||||||||||    
T  20880038 tgttatgaagcatgatatccatggaaggaatgagagaaaagtaact 20880083  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 21215062 - 21215018
Alignment:
Q  307 attttgttatgaaacatgacattcatggaaggaatgagagaaaag 351  Q
    |||||||||  ||||||||||| ||||||||||||||||||||||    
T  21215062 attttgttagtaaacatgacatccatggaaggaatgagagaaaag 21215018  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 349
Target Start/End: Original strand, 1136227 - 1136266
Alignment:
Q  310 ttgttatgaaacatgacattcatggaaggaatgagagaaa 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  1136227 ttgttatcaaacatgacatccatggaaggaatgagagaaa 1136266  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 348
Target Start/End: Complemental strand, 5690897 - 5690859
Alignment:
Q  310 ttgttatgaaacatgacattcatggaaggaatgagagaa 348  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  5690897 ttgttatgaaacatggcatccatggaaggaatgagagaa 5690859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 13856809 - 13856765
Alignment:
Q  311 tgttatgaaacatgacattcatggaaggaatgagagaaaagtaac 355  Q
    |||||||||||||||||| ||||||| ||| ||||||||| ||||    
T  13856809 tgttatgaaacatgacatccatggaaagaaggagagaaaactaac 13856765  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 19954451 - 19954489
Alignment:
Q  311 tgttatgaaacatgacattcatggaaggaatgagagaaa 349  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  19954451 tgttatgaaacatgacatccatggaaggaaggagagaaa 19954489  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 10661755 - 10661800
Alignment:
Q  310 ttgttatgaaacatgacattcatggaaggaatgagagaaaagtaac 355  Q
    |||||| |||||||||||| ||||||| ||||||||||||| ||||    
T  10661755 ttgttaggaaacatgacatccatggaaagaatgagagaaaactaac 10661800  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 2427369 - 2427329
Alignment:
Q  311 tgttatgaaacatgacattcatggaaggaatgagagaaaag 351  Q
    ||||| |||||||| ||| ||||||||||||||||||||||    
T  2427369 tgttaggaaacatggcatccatggaaggaatgagagaaaag 2427329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 391
Target Start/End: Complemental strand, 24962260 - 24962232
Alignment:
Q  363 tttggctaaactgtacttttcgcccccta 391  Q
    |||||||||||||||||||||||||||||    
T  24962260 tttggctaaactgtacttttcgcccccta 24962232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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