View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5973_low_9 (Length: 268)

Name: NF5973_low_9
Description: NF5973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5973_low_9
NF5973_low_9
[»] chr8 (2 HSPs)
chr8 (1-212)||(7605315-7605528)
chr8 (157-207)||(12883127-12883177)
[»] chr5 (7 HSPs)
chr5 (157-212)||(29429618-29429673)
chr5 (158-208)||(29429556-29429606)
chr5 (154-207)||(29855458-29855511)
chr5 (157-212)||(6818584-6818639)
chr5 (158-208)||(36187525-36187575)
chr5 (155-212)||(141317-141374)
chr5 (156-212)||(30784316-30784372)
[»] chr3 (8 HSPs)
chr3 (157-212)||(43271653-43271708)
chr3 (160-212)||(23071973-23072025)
chr3 (157-212)||(54362039-54362094)
chr3 (157-197)||(32737831-32737871)
chr3 (157-212)||(9762755-9762810)
chr3 (157-212)||(37311652-37311707)
chr3 (158-197)||(41666924-41666963)
chr3 (157-212)||(53683946-53684001)
[»] chr2 (4 HSPs)
chr2 (154-212)||(929031-929089)
chr2 (160-199)||(34806211-34806250)
chr2 (154-196)||(2788427-2788471)
chr2 (160-212)||(15215514-15215566)
[»] chr1 (6 HSPs)
chr1 (154-212)||(3150657-3150715)
chr1 (154-212)||(29867033-29867091)
chr1 (162-212)||(37316136-37316186)
chr1 (154-212)||(49044700-49044758)
chr1 (154-197)||(47206737-47206780)
chr1 (156-212)||(42728509-42728565)
[»] scaffold0121 (1 HSPs)
scaffold0121 (156-212)||(34012-34068)
[»] chr7 (6 HSPs)
chr7 (160-212)||(37708542-37708594)
chr7 (157-212)||(48723328-48723383)
chr7 (161-212)||(9658337-9658388)
chr7 (158-197)||(11698390-11698429)
chr7 (158-212)||(29724371-29724425)
chr7 (156-210)||(32854262-32854316)
[»] chr4 (9 HSPs)
chr4 (157-201)||(48809865-48809909)
chr4 (157-212)||(50685601-50685656)
chr4 (161-212)||(13529361-13529412)
chr4 (157-212)||(14112276-14112330)
chr4 (157-200)||(40227654-40227697)
chr4 (154-212)||(3527885-3527943)
chr4 (163-212)||(48546338-48546387)
chr4 (164-212)||(13902029-13902077)
chr4 (160-212)||(23241023-23241075)
[»] chr6 (1 HSPs)
chr6 (157-212)||(7509736-7509791)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 7605315 - 7605528
Alignment:
Q  1 taacaacttgtattattattttgcttttaacaagcatgattatttnnnnnnnnnnnnnnnncagttttgataattaatattagaatatagtttctactac 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||                |||||||||||||||||||||||||||||||||||||||    
T  7605315 taacaacttgtattattattttgcttttaacaagcatgatcatttaaaataaaataaaaaacagttttgataattaatattagaatatagtttctactac 7605414  T
Q  101 tatataatacctgaaaagta--agtctatagtattttttagggaaatattaacttagacacaagttaatgagtcaaaagtgaaaatattttgttgtaata 198  Q
    ||||||||| ||||||||||  ||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||    
T  7605415 tatataataactgaaaagtataagtctatagtattttttagggaaatgttaacttagactcaaattaatgagtcaaaagtggaaatattttgttgaaata 7605514  T
Q  199 aatacatttgaatt 212  Q
    ||| ||||| ||||    
T  7605515 aatgcatttaaatt 7605528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 12883177 - 12883127
Alignment:
Q  157 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacattt 207  Q
    ||||||||||||||| | ||||||||||| ||||||||||| ||| |||||    
T  12883177 cacaagttaatgagttataagtgaaaataatttgttgtaattaatgcattt 12883127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 29429618 - 29429673
Alignment:
Q  157 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    |||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||    
T  29429618 cacaagttaaagagtcaaaagtggaaatattttgttgtaattaatacatttgaatt 29429673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 29429556 - 29429606
Alignment:
Q  158 acaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttg 208  Q
    ||||||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  29429556 acaagttaaagagtcaaaagtggaaatattttgttgtaattaatacatttg 29429606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 29855511 - 29855458
Alignment:
Q  154 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacattt 207  Q
    |||||||||| ||||||||||| || |||||||||||||||||| ||| |||||    
T  29855511 agacacaagtaaatgagtcaaatgtaaaaatattttgttgtaattaatgcattt 29855458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 6818584 - 6818639
Alignment:
Q  157 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    ||||||||||||||| |||| |||||||| ||||||||||| |||  |||||||||    
T  6818584 cacaagttaatgagttaaaaatgaaaataatttgttgtaatcaatgtatttgaatt 6818639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 36187525 - 36187575
Alignment:
Q  158 acaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttg 208  Q
    |||||||||||| | |||||| |||||||||||||||||| ||| ||||||    
T  36187525 acaagttaatgaattaaaagtaaaaatattttgttgtaattaatgcatttg 36187575  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 212
Target Start/End: Original strand, 141317 - 141374
Alignment:
Q  155 gacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    ||||||||||||||||  ||||||| |||||  |||||||||| ||| ||||||||||    
T  141317 gacacaagttaatgagctaaaagtggaaataaattgttgtaattaatgcatttgaatt 141374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 30784372 - 30784316
Alignment:
Q  156 acacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    |||||||||| | ||| |||||| |||||||||||||||||| |||  |||||||||    
T  30784372 acacaagttattaagttaaaagtaaaaatattttgttgtaattaatgtatttgaatt 30784316  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 43271653 - 43271708
Alignment:
Q  157 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||| ||||||||||    
T  43271653 cacaagttaatgaatcaaaagtggaaatattctgttgtaataaatgcatttgaatt 43271708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 23072025 - 23071973
Alignment:
Q  160 aagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    ||||||||||| |||||||||||||||||| ||||||| ||| ||||||||||    
T  23072025 aagttaatgagccaaaagtgaaaatattttattgtaattaatgcatttgaatt 23071973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 54362039 - 54362094
Alignment:
Q  157 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    ||||||||||||||||||||||  |||||||| |||||||| ||| ||||||||||    
T  54362039 cacaagttaatgagtcaaaagtagaaatatttggttgtaatcaatgcatttgaatt 54362094  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 32737871 - 32737831
Alignment:
Q  157 cacaagttaatgagtcaaaagtgaaaatattttgttgtaat 197  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  32737871 cacaagttaatgagtcaaaaatgaaaataatttgttgtaat 32737831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 9762810 - 9762755
Alignment:
Q  157 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    ||||| ||||||||||||||||  ||||||||| ||||||| ||| ||||||||||    
T  9762810 cacaaattaatgagtcaaaagtagaaatattttattgtaattaatgcatttgaatt 9762755  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 37311652 - 37311707
Alignment:
Q  157 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    |||||||||||||| |||||||  ||||| ||||||||||| ||| ||||||||||    
T  37311652 cacaagttaatgagacaaaagtataaataatttgttgtaattaatgcatttgaatt 37311707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 41666924 - 41666963
Alignment:
Q  158 acaagttaatgagtcaaaagtgaaaatattttgttgtaat 197  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  41666924 acaagttaatgagtcaaaagtaaaaatattttattgtaat 41666963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 53683946 - 53684001
Alignment:
Q  157 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    |||||||||||||| |||||||||||||| |||||| |||| |||  |||||||||    
T  53683946 cacaagttaatgagccaaaagtgaaaataatttgttttaattaatgtatttgaatt 53684001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 929031 - 929089
Alignment:
Q  154 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    ||||||||||||| |||||||||||  ||||||||||||||||| ||| ||||||||||    
T  929031 agacacaagttaaagagtcaaaagtagaaatattttgttgtaatcaatgcatttgaatt 929089  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 34806211 - 34806250
Alignment:
Q  160 aagttaatgagtcaaaagtgaaaatattttgttgtaataa 199  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  34806211 aagttaatgagtcaaaaatgaaaatattttattgtaataa 34806250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 2788427 - 2788471
Alignment:
Q  154 agacacaagttaatg--agtcaaaagtgaaaatattttgttgtaa 196  Q
    |||||||||||||||  ||||||||||||||||||||| ||||||    
T  2788427 agacacaagttaatgtgagtcaaaagtgaaaatattttattgtaa 2788471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 15215514 - 15215566
Alignment:
Q  160 aagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    |||||||||||||||||||  |||||| |||||| ||| ||| ||||||||||    
T  15215514 aagttaatgagtcaaaagtagaaatatattgttgaaattaatgcatttgaatt 15215566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 3150657 - 3150715
Alignment:
Q  154 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    |||||||||||||  ||||||||||| ||||| ||||||||||| ||||||||||||||    
T  3150657 agacacaagttaacaagtcaaaagtggaaataatttgttgtaattaatacatttgaatt 3150715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 29867091 - 29867033
Alignment:
Q  154 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    ||||| ||||||| || ||||||||  ||||||||||||||||||||||||||||||||    
T  29867091 agacataagttaacgaatcaaaagtagaaatattttgttgtaataaatacatttgaatt 29867033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 37316136 - 37316186
Alignment:
Q  162 gttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    |||||||||||||||||||||||| ||||||||||| |||| |||||||||    
T  37316136 gttaatgagtcaaaagtgaaaataatttgttgtaattaatatatttgaatt 37316186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 49044700 - 49044758
Alignment:
Q  154 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    ||||| |||||||||||||||||||  ||||||||| ||||||| ||| ||||||||||    
T  49044700 agacataagttaatgagtcaaaagtagaaatattttattgtaattaatgcatttgaatt 49044758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 47206737 - 47206780
Alignment:
Q  154 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaat 197  Q
    ||||||||||||||||||||||| | |||||| |||||||||||    
T  47206737 agacacaagttaatgagtcaaaaataaaaatactttgttgtaat 47206780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 42728565 - 42728509
Alignment:
Q  156 acacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    |||||| |||||||||||||| |||||||||||| ||| | | ||| ||||||||||    
T  42728565 acacaaattaatgagtcaaaaatgaaaatattttattgaatttaatgcatttgaatt 42728509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 34012 - 34068
Alignment:
Q  156 acacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    ||||||||||||| ||||||||| |||||||||  ||||||| ||||||||||||||    
T  34012 acacaagttaatgcgtcaaaagtaaaaatatttcattgtaattaatacatttgaatt 34068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 37708594 - 37708542
Alignment:
Q  160 aagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    ||||||||||| |||||||||||||  ||||||||||||||| ||||||||||    
T  37708594 aagttaatgagccaaaagtgaaaatgatttgttgtaataaatgcatttgaatt 37708542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 48723383 - 48723328
Alignment:
Q  157 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    |||||||||||||||  |||||| ||||||||||||||||| ||| ||||||||||    
T  48723383 cacaagttaatgagtttaaagtggaaatattttgttgtaatgaatgcatttgaatt 48723328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 9658337 - 9658388
Alignment:
Q  161 agttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    ||||||||||||||||||  |||| |||||||||||| ||| ||||||||||    
T  9658337 agttaatgagtcaaaagtataaattttttgttgtaattaatgcatttgaatt 9658388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 11698390 - 11698429
Alignment:
Q  158 acaagttaatgagtcaaaagtgaaaatattttgttgtaat 197  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  11698390 acaagttaatgagtcaaaattaaaaatattttgttgtaat 11698429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 29724425 - 29724371
Alignment:
Q  158 acaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    |||||| ||| ||||||||||  ||||| ||||||||||||||| ||||||||||    
T  29724425 acaagtaaataagtcaaaagtagaaataatttgttgtaataaatgcatttgaatt 29724371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 32854262 - 32854316
Alignment:
Q  156 acacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaa 210  Q
    |||||||||||||||| ||||||| ||||| |||||| |||| ||| ||||||||    
T  32854262 acacaagttaatgagttaaaagtggaaataatttgttctaatcaatgcatttgaa 32854316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 48809865 - 48809909
Alignment:
Q  157 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaat 201  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||    
T  48809865 cacaagttaatgagtctaaagtgaaaatattttgttataataaat 48809909  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 50685601 - 50685656
Alignment:
Q  157 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    |||||||||||||| |||||||| ||||| |||||||||||||||  |||||||||    
T  50685601 cacaagttaatgagccaaaagtggaaataatttgttgtaataaatgtatttgaatt 50685656  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 13529361 - 13529412
Alignment:
Q  161 agttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    ||||||||||||||||||  |||| |||||||||||| ||| ||||||||||    
T  13529361 agttaatgagtcaaaagtataaattttttgttgtaattaatgcatttgaatt 13529412  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 14112330 - 14112276
Alignment:
Q  157 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    ||||||||||||||| |||||| | ||||||||| |||||| ||||||||||||||    
T  14112330 cacaagttaatgagttaaaagt-ataatattttgctgtaatcaatacatttgaatt 14112276  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 200
Target Start/End: Complemental strand, 40227697 - 40227654
Alignment:
Q  157 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaa 200  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||    
T  40227697 cacaagttaatgaggcaaaagtggaaataatttgttgtaataaa 40227654  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 3527885 - 3527943
Alignment:
Q  154 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    |||||||||| ||| |||| |||||  ||||||||||||||||| ||| ||||||||||    
T  3527885 agacacaagtcaataagtccaaagtagaaatattttgttgtaatcaatgcatttgaatt 3527943  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 48546387 - 48546338
Alignment:
Q  163 ttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    ||||||||| ||||||  ||||||| |||| |||||||||||||||||||    
T  48546387 ttaatgagttaaaagtagaaatattgtgttataataaatacatttgaatt 48546338  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 13902029 - 13902077
Alignment:
Q  164 taatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    |||||||||||||||  |||||||| |||||||| ||| ||||||||||    
T  13902029 taatgagtcaaaagtagaaatatttggttgtaatcaatgcatttgaatt 13902077  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 23241023 - 23241075
Alignment:
Q  160 aagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    |||||||||||| |||||| |||||||||||||  ||| ||| ||||||||||    
T  23241023 aagttaatgagttaaaagtaaaaatattttgttacaattaatgcatttgaatt 23241075  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 7509791 - 7509736
Alignment:
Q  157 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 212  Q
    ||||||||||||||||||||||  ||||||| ||||||||| ||| ||||||||||    
T  7509791 cacaagttaatgagtcaaaagtagaaatattgtgttgtaatcaatgcatttgaatt 7509736  T

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