View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5974-Insertion-1 (Length: 953)
Name: NF5974-Insertion-1
Description: NF5974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5974-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 9 - 544
Target Start/End: Original strand, 44112881 - 44113407
Alignment:
| Q |
9 |
cgcaattcataacttatacatgttttgagtctaaaaatgtgtagttcggtttctgacaattcagattttacattaattggcaaacttcataagtttttta |
108 |
Q |
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| T |
44112881 |
cgcaattcataacttatacatgttt-gagtctaaaaatgtgtagttcggtttctgacaattcagattttacattaattggcaaacttcataagattttta |
44112979 |
T |
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| Q |
109 |
attaacgcatattgaagaacaggttcataacacaattattcaggtgacaccacccacgatcaaaagcagaacattagacagacagactcttgcaatgtac |
208 |
Q |
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| T |
44112980 |
attaacgcatattgaagaacaagttcataacacaattattcaggtgacaccacccacgatcaaaaacagaacattagac----agactcttgcaatgtac |
44113075 |
T |
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| Q |
209 |
tgattgtatataacgaagacaaagattttaatgcaaagctaaactcttgatatttaaattataaacccttatttgtatgtgtttaggcaacctgttgaaa |
308 |
Q |
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| T |
44113076 |
tgattgtatataatgaagacaaagattttaatgcaaagctaaactcttgatatttaaattataaacccttatttgtatgtgtttaggcaacctgttgaaa |
44113175 |
T |
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| Q |
309 |
agcaatactgttatgtaaaccattgtgttcatggtataaatgtttaaatataatttttgttcaattgagtatgtaaacacattgagaaatccttaaattt |
408 |
Q |
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| T |
44113176 |
agcaatattgttatgtaaaccattgtgttcattgtataaatgtttaaatataatttttgttcaattgagtat----acacattgagaaatccttaaattt |
44113271 |
T |
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| Q |
409 |
tcttaatttcgtttctaatatttttatcaaactttgcaattgatggaacttaattgcatccatataactaattaaaggtgccgacccaataatgttcata |
508 |
Q |
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| T |
44113272 |
tcttaatttcgtttctaatatttttatcaaactttgcaattgatggaacttaattgcatccatataactaattaaaggtgccgacccaataatgttcata |
44113371 |
T |
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| Q |
509 |
tgcaatgccagaaagtttatattgtgttggaaacgt |
544 |
Q |
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| T |
44113372 |
tgcaatgccagaaagtttacattgtgttggaaacgt |
44113407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 622 - 825
Target Start/End: Original strand, 44114847 - 44115050
Alignment:
| Q |
622 |
gatttgggtactgcaatagacacaattaagaattgcgatgatcaagcttctattcacattggaatattattcatttttgggttcagttaagattttataa |
721 |
Q |
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| T |
44114847 |
gatttgggtactgcaatagacacaattaagaattgcgatgatcaagcttctattcacattggaatattattcatttttgggttcagttaagattttataa |
44114946 |
T |
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| Q |
722 |
ttgctatttagtttccaatgtgaataattaactctggtttcaaagtgggattttatggtgctttatatctcagtcttgaaacataaagatctgattgatc |
821 |
Q |
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| T |
44114947 |
ttgctatttagtttccaatgtgaataattaactctggtttcaaagtgggattttctggtgctttatatctcagtcttgaaacataaagatctgattgatc |
44115046 |
T |
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| Q |
822 |
gttt |
825 |
Q |
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|||| |
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| T |
44115047 |
gttt |
44115050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 868 - 937
Target Start/End: Original strand, 44115034 - 44115102
Alignment:
| Q |
868 |
gatctcattgatcgtttcaaggttttgcacaatgatctgattgaaacccgaacatgagacttttacatgg |
937 |
Q |
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| T |
44115034 |
gatctgattgatcgtttcaaggttttgcacaatgatctgattgaaa-ccgaacatgagacttttacatgg |
44115102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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