View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5974-Insertion-2 (Length: 943)

Name: NF5974-Insertion-2
Description: NF5974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5974-Insertion-2
NF5974-Insertion-2
[»] chr8 (1 HSPs)
chr8 (339-915)||(29777587-29778189)
[»] chr2 (1 HSPs)
chr2 (366-419)||(40299656-40299709)
[»] chr7 (3 HSPs)
chr7 (362-438)||(17270396-17270474)
chr7 (379-438)||(11372283-11372342)
chr7 (392-425)||(33322971-33323004)
[»] chr3 (1 HSPs)
chr3 (383-425)||(4155199-4155241)
[»] chr1 (1 HSPs)
chr1 (381-431)||(33162024-33162074)
[»] chr5 (2 HSPs)
chr5 (355-402)||(19169650-19169697)
chr5 (355-405)||(24923451-24923501)
[»] chr4 (1 HSPs)
chr4 (181-279)||(33883574-33883672)


Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 339 - 915
Target Start/End: Complemental strand, 29778189 - 29777587
Alignment:
Q  339 atagttggttttatacaaattagcttaaaaaataattacaaatctcacaattcatattaactattattcaccaaactacatattagtattgtacatgtca 438  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29778189 atagttggttttatacaaattagcttaaaaaatgattacaaatctcacgattcatattaactattattcaccaaactacatattagtattgtacatgtca 29778090  T
Q  439 gactgcatattagcaagggacactacacttctaataataatgaaggtatctgatatgaatctccaa-aaaatgtccaaccatgaacccttacttttccga 537  Q
     ||||||||||||||  ||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  29778089 aactgcatattagcacaggacactgcactactaataataatgaaggtatctgatatgaatctccaaaaaaatgttcaaccatgaacccttacttttccga 29777990  T
Q  538 atttcgttaagatggtactttgcacttagagcaaatatatttgatttggctaaaatcgacacaatgagagaaatgtaagctaaat--------------- 622  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||                   
T  29777989 atttcgttaagatggtactttgcacttagagcaaatatatttgatttggctaaaatcgaaacaacgagagaaatgtaagctaaatttgtggtctactaag 29777890  T
Q  623 tgcaaat----ctattaatctgttaa---aatttgactaataagcttgattcaatttgtggtcagttgttattcaaatattctcattttcattatggacc 715  Q
    |  ||||    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29777889 ttaaaatttggctattaatctgttaaaataatttgactaataagcttgattcaatttgtggtcagttgttgttcaaatattctcattttcattatggacc 29777790  T
Q  716 aaaaagaagataacacaagtgtctccttagaagtcacttggttggagacttgttattacatcttgagttattcaagatttgaacatcgaaaaaggaaata 815  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29777789 aaaaagaagataatacaagtgtctccttagaagtcacttggttggagacttgttattacatcttgagttattcaagatttgaacatcgaaaaaggaaata 29777690  T
Q  816 aaaatacactccatccatccgtttcaaatatttttatttacatc------tagggggagtacattgtttta-tttcaatcatggcattgatatcatgcat 908  Q
    |||||||||    |||||||||||||||   |||||||||||||      || |||||||||||||||||| ||||||||||||||||||||||||||||    
T  29777689 aaaatacac----tccatccgtttcaaaatattttatttacatcttgagataaggggagtacattgttttattttcaatcatggcattgatatcatgcat 29777594  T
Q  909 ttaatta 915  Q
    |||||||    
T  29777593 ttaatta 29777587  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 40299709 - 40299656
Alignment:
Q  366 aaaaataattacaaatctcacaattcatattaactattattcaccaaactacat 419  Q
    ||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  40299709 aaaaatagttaaaaatctcccaattcatattaactattactcaccaaactacat 40299656  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 362 - 438
Target Start/End: Complemental strand, 17270474 - 17270396
Alignment:
Q  362 cttaaaaaataattacaaatctcacaattcatattaactattattcaccaaa--ctacatattagtattgtacatgtca 438  Q
    ||||||||||  |||| ||| |||||||||||||||||||||| ||||||||  |||||| ||||| ||||| ||||||    
T  17270474 cttaaaaaatgtttacgaatttcacaattcatattaactattactcaccaaattctacatgttagttttgtatatgtca 17270396  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 438
Target Start/End: Original strand, 11372283 - 11372342
Alignment:
Q  379 aatctcacaattcatattaactattattcaccaaactacatattagtattgtacatgtca 438  Q
    |||||||||||||||| |||||||||||| | ||||||||| ||| | ||||| ||||||    
T  11372283 aatctcacaattcataataactattattcgctaaactacatgttaatgttgtatatgtca 11372342  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 425
Target Start/End: Complemental strand, 33323004 - 33322971
Alignment:
Q  392 atattaactattattcaccaaactacatattagt 425  Q
    |||||||||| |||||||||||||||||||||||    
T  33323004 atattaactaatattcaccaaactacatattagt 33322971  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 383 - 425
Target Start/End: Original strand, 4155199 - 4155241
Alignment:
Q  383 tcacaattcatattaactattattcaccaaactacatattagt 425  Q
    ||||||||||||||||||||| ||||||||| |||||||||||    
T  4155199 tcacaattcatattaactattgttcaccaaattacatattagt 4155241  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 381 - 431
Target Start/End: Complemental strand, 33162074 - 33162024
Alignment:
Q  381 tctcacaattcatattaactattattcaccaaactacatattagtattgta 431  Q
    |||||||||| ||||||||||||||||||||||| | |||||||| |||||    
T  33162074 tctcacaattgatattaactattattcaccaaaccatatattagtgttgta 33162024  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 402
Target Start/End: Complemental strand, 19169697 - 19169650
Alignment:
Q  355 aaattagcttaaaaaataattacaaatctcacaattcatattaactat 402  Q
    ||||||| |||||||||  |||| ||||||||||||||||||||||||    
T  19169697 aaattagtttaaaaaatggttacgaatctcacaattcatattaactat 19169650  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 24923501 - 24923451
Alignment:
Q  355 aaattagcttaaaaaataattacaaatctcacaattcatattaactattat 405  Q
    |||| |||||||||||||||||| ||||| |||||| || |||||||||||    
T  24923501 aaatcagcttaaaaaataattacgaatcttacaatttatgttaactattat 24923451  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 279
Target Start/End: Complemental strand, 33883672 - 33883574
Alignment:
Q  181 tcttctccaacactcagtatgatttgtgctttatttaacaagagtagatcataaggttcacaatccagtatcacattcgtaactaatcatgctagaata 279  Q
    |||||||||||  |||| ||| | |||| |||||||||||||| ||||| | ||||||||||||  |||  |||| || |||| ||||||| |||||||    
T  33883672 tcttctccaacgttcagcatggtgtgtgttttatttaacaagaatagataacaaggttcacaatgaagtgccacaatcctaaccaatcatggtagaata 33883574  T

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