View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5974-Insertion-3 (Length: 919)

Name: NF5974-Insertion-3
Description: NF5974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5974-Insertion-3
NF5974-Insertion-3
[»] chr1 (10 HSPs)
chr1 (451-796)||(14569311-14569658)
chr1 (96-318)||(14569679-14569900)
chr1 (613-794)||(14577656-14577842)
chr1 (846-910)||(14569198-14569264)
chr1 (18-70)||(14569889-14569941)
chr1 (364-419)||(31922855-31922910)
chr1 (356-420)||(11248641-11248705)
chr1 (482-553)||(14577883-14577954)
chr1 (365-420)||(6951050-6951105)
chr1 (365-418)||(46836392-46836445)
[»] scaffold0804 (2 HSPs)
scaffold0804 (96-214)||(5117-5231)
scaffold0804 (18-70)||(5220-5272)
[»] chr2 (5 HSPs)
chr2 (363-420)||(12457023-12457080)
chr2 (363-420)||(9154148-9154205)
chr2 (363-419)||(14949239-14949295)
chr2 (363-420)||(12890270-12890327)
chr2 (363-419)||(19246495-19246552)
[»] chr7 (5 HSPs)
chr7 (362-420)||(19989092-19989150)
chr7 (364-420)||(31448377-31448433)
chr7 (370-420)||(5516315-5516365)
chr7 (364-418)||(11575456-11575510)
chr7 (363-420)||(28885495-28885552)
[»] scaffold0009 (1 HSPs)
scaffold0009 (356-420)||(143349-143413)
[»] chr8 (4 HSPs)
chr8 (363-420)||(15196513-15196570)
chr8 (365-420)||(24802568-24802623)
chr8 (363-418)||(38125599-38125654)
chr8 (364-418)||(37009379-37009433)
[»] chr4 (3 HSPs)
chr4 (363-420)||(32564842-32564899)
chr4 (368-420)||(4473071-4473123)
chr4 (363-420)||(7209063-7209120)
[»] chr3 (5 HSPs)
chr3 (363-420)||(42380564-42380621)
chr3 (363-420)||(42380735-42380792)
chr3 (363-420)||(42409278-42409335)
chr3 (363-420)||(42409449-42409506)
chr3 (362-418)||(23505573-23505629)
[»] scaffold0001 (1 HSPs)
scaffold0001 (363-418)||(504606-504661)
[»] chr5 (6 HSPs)
chr5 (365-418)||(21743029-21743082)
chr5 (363-412)||(30264571-30264620)
chr5 (363-418)||(8564909-8564964)
chr5 (365-420)||(39841473-39841528)
chr5 (372-418)||(32147121-32147167)
chr5 (373-418)||(16725036-16725081)
[»] chr6 (1 HSPs)
chr6 (373-416)||(6865227-6865270)


Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 451 - 796
Target Start/End: Complemental strand, 14569658 - 14569311
Alignment:
Q  451 aaatcatcactcacttgtgctcaagagagtcatcagatcatatggcaacccaaaaggaaccaaagaagatcataattgatactgaccctggaatcggtaa 550  Q
    |||||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14569658 aaatcatcactcacttctgctcaagagagtcatcaaatcacatggcagcccaaaaggaaccaaagaagatcataattgatactgaccctggaatcggtaa 14569559  T
Q  551 atattagtaattaatacacaacatatacnnnnnnnnnnnnn--gctctttgtctatgtttgatttttcaaattccatgtttctttgactttgatcataat 648  Q
    ||| ||| ||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14569558 ataatagcaattaatacacaacatatactttttttttttttttgctctttgtctatgtttgatttttcaaattccatgtttctttgactttgatcataat 14569459  T
Q  649 attgtgattggttttatttctatagatgatgctatggcaatattccttgctctaagatcaccagaagttgaagttattggacttactactatttatggaa 748  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14569458 attgtgattggttttatttctatagatgatgctatggcaatattccttgctctaagatcaccagaagttcaagttattggacttactactatttatggaa 14569359  T
Q  749 atgtttatactactcttgctaccagaaatgccttgcacttggtaatgc 796  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14569358 atgtttatactactcttgctaccagaaatgccttgcacttggtaatgc 14569311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 96 - 318
Target Start/End: Complemental strand, 14569900 - 14569679
Alignment:
Q  96 attttatcaaataaattgtgtccagaattttctttttgactcaaatgatgtcttgtgactatgatgatgtatttggttgttagacgcaatttctcttttt 195  Q
    ||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  14569900 attttgtcaaataaattgtgtccagaattttctttttgactca--tgatgtcttgtgactatgatgatgtatttggtt--tagacgcaatttctcttttt 14569805  T
Q  196 gacacacatttcgagtatc---tatgcatggtattttactagttttgttgtagtagtagattaattgttgcagcagtaaataaaagcaccatgcaaagat 292  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14569804 gacacacatttcgagtatcctctatgcatggtattttactagttttgttgtagtagtagattaattgttgcagcagtaaataaaagcaccatgcaaagat 14569705  T
Q  293 acttacgtgtcgatgtatcttcaaat 318  Q
    ||||||||||||||||||||||||||    
T  14569704 acttacgtgtcgatgtatcttcaaat 14569679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 613 - 794
Target Start/End: Complemental strand, 14577842 - 14577656
Alignment:
Q  613 tttcaaattccatgtttctttgactttgatcataatattgtgattggttttatttctat-----agatgatgctatggcaatattccttgctctaagatc 707  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||| || | ||| | |     ||||||||||||||||||||| ||||||||||||||    
T  14577842 tttcaaatttcatgtttctttgactttgatcataatattgtaattgattattttttttttgtgcagatgatgctatggcaatatttcttgctctaagatc 14577743  T
Q  708 accagaagttgaagttattggacttactactatttatggaaatgtttatactactcttgctaccagaaatgccttgcacttggtaat 794  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  14577742 accagaagttcaagttattggacttactactatctatggaaatgtttatactactcttgccaccagaaatgctttgcatttggtaat 14577656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 846 - 910
Target Start/End: Complemental strand, 14569264 - 14569198
Alignment:
Q  846 ctaatgtaccttgaaatctatgtattggagagctaattt-ttgtaacg-cttgtgtatctcatgtaa 910  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  14569264 ctaatgtaccttaaaatctatgtattggagagctaatttcttgtaacgtcttgtgtatctcatgtaa 14569198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 14569941 - 14569889
Alignment:
Q  18 tgaaaaatacttatacctatgcttttagtcaaaatcaaataattttatcaaat 70  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  14569941 tgaaaaatacttatacctatacttttagtcaaaatcaaataattttgtcaaat 14569889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 364 - 419
Target Start/End: Complemental strand, 31922910 - 31922855
Alignment:
Q  364 ctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatag 419  Q
    ||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||    
T  31922910 ctccgtccctatatctaagcacccttttattaaaggcaaaagatgtttacatatag 31922855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 11248641 - 11248705
Alignment:
Q  356 aatacatcctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    ||||| ||||||||||||||||||||||||  |||||||| ||||||| | ||||||||||||||    
T  11248641 aatacttcctccgtccctatatctaagcactattttattagaggcaaatggtgcttacatatagg 11248705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 482 - 553
Target Start/End: Complemental strand, 14577954 - 14577883
Alignment:
Q  482 atcagatcatatggcaacccaaaaggaaccaaagaagatcataattgatactgaccctggaatcggtaaata 553  Q
    |||| |||| |||||||| ||||  |||||||||||||||||||| || || ||||||||||||||||||||    
T  14577954 atcaaatcacatggcaactcaaaccgaaccaaagaagatcataatcgacaccgaccctggaatcggtaaata 14577883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 365 - 420
Target Start/End: Complemental strand, 6951105 - 6951050
Alignment:
Q  365 tccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    ||||||| |||||||||||||| |||||||| ||||||||  ||||||||||||||    
T  6951105 tccgtccttatatctaagcacccttttattagaggcaaagtgtgcttacatatagg 6951050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 418
Target Start/End: Complemental strand, 46836445 - 46836392
Alignment:
Q  365 tccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatata 418  Q
    |||||||||||||||||||||| |||||||| |||||||   ||||||||||||    
T  46836445 tccgtccctatatctaagcacccttttattagaggcaaaatgtgcttacatata 46836392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0804 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 96 - 214
Target Start/End: Complemental strand, 5231 - 5117
Alignment:
Q  96 attttatcaaataaattgtgtccagaattttctttttgactcaaatgatgtcttgtgactatgatgatgtatttggttgttagacgcaatttctcttttt 195  Q
    ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||  ||| || ||||||||||||||    
T  5231 attttgtcaaataaattgtgtccagaattttctttttgactc--atgatgtcttgtgactatgatgatgtatttggt--ttatacccaatttctcttttt 5136  T
Q  196 gacacacatttcgagtatc 214  Q
    |||||||||||| ||||||    
T  5135 gacacacatttctagtatc 5117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0804; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 5272 - 5220
Alignment:
Q  18 tgaaaaatacttatacctatgcttttagtcaaaatcaaataattttatcaaat 70  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  5272 tgaaaaatacttatacctatacttttagtcaaaatcaaataattttgtcaaat 5220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 9e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 363 - 420
Target Start/End: Original strand, 12457023 - 12457080
Alignment:
Q  363 cctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    |||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||    
T  12457023 cctccgtccctatatctaagcacccttttattagaggcaaagggtgcttacatatagg 12457080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 9154205 - 9154148
Alignment:
Q  363 cctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    |||||||||||||||||||||||| |||||||| ||| ||||| || |||||||||||    
T  9154205 cctccgtccctatatctaagcacccttttattagaggaaaagggtggttacatatagg 9154148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 363 - 419
Target Start/End: Original strand, 14949239 - 14949295
Alignment:
Q  363 cctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatag 419  Q
    |||||||||||| ||||||||||  |||||||| ||||||| | |||||||||||||    
T  14949239 cctccgtccctacatctaagcactcttttattagaggcaaatggtgcttacatatag 14949295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 420
Target Start/End: Original strand, 12890270 - 12890327
Alignment:
Q  363 cctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    |||||||||||||||||||||| | |||||||| ||| ||| | ||||||||| ||||    
T  12890270 cctccgtccctatatctaagcatccttttattagaggaaaatggtgcttacatttagg 12890327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 419
Target Start/End: Complemental strand, 19246552 - 19246495
Alignment:
Q  363 cctccgtccctatatctaagcac-ctttttattaaaggcaaaggatgcttacatatag 419  Q
    ||||||||| ||||||||||||| | |||||||| ||| ||| |||||||||||||||    
T  19246552 cctccgtccttatatctaagcacaccttttattagaggaaaatgatgcttacatatag 19246495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 19989150 - 19989092
Alignment:
Q  362 tcctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    ||||||||||||||||||||||||| |||||||| ||||||| | ||||||||||||||    
T  19989150 tcctccgtccctatatctaagcaccattttattagaggcaaatggtgcttacatatagg 19989092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 364 - 420
Target Start/End: Complemental strand, 31448433 - 31448377
Alignment:
Q  364 ctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    ||||||||||||||||||||||| |||||||| | ||||||| ||||||||||||||    
T  31448433 ctccgtccctatatctaagcacccttttattagatgcaaagggtgcttacatatagg 31448377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 370 - 420
Target Start/End: Complemental strand, 5516365 - 5516315
Alignment:
Q  370 ccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    |||||||| |||||||| |||||||||||| ||| | ||||||||||||||    
T  5516365 ccctatatgtaagcaccattttattaaaggtaaatggtgcttacatatagg 5516315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 11575510 - 11575456
Alignment:
Q  364 ctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatata 418  Q
    ||||||||||||||||||||| | |||||||| |||||||   ||||||||||||    
T  11575510 ctccgtccctatatctaagcatcattttattagaggcaaaatgtgcttacatata 11575456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 28885552 - 28885495
Alignment:
Q  363 cctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    ||||||||| ||||| |||||||| |||||||| ||| ||| | ||||||||||||||    
T  28885552 cctccgtccttatatgtaagcacccttttattagaggaaaatggtgcttacatatagg 28885495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 143349 - 143413
Alignment:
Q  356 aatacatcctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    ||||| ||||| |||||||||| ||| |||| |||||||| ||||||||||||||||||||||||    
T  143349 aatacttcctctgtccctatatgtaaacacccttttattagaggcaaaggatgcttacatatagg 143413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 15196570 - 15196513
Alignment:
Q  363 cctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    |||||||||||||||||||||||| |||||||| | | ||| ||||||||||||||||    
T  15196570 cctccgtccctatatctaagcacccttttattagaagaaaaagatgcttacatatagg 15196513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 365 - 420
Target Start/End: Complemental strand, 24802623 - 24802568
Alignment:
Q  365 tccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    |||||||||||||||||||||| |||||||| | ||||| | ||||||||||||||    
T  24802623 tccgtccctatatctaagcacccttttattagatgcaaaaggtgcttacatatagg 24802568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 38125654 - 38125599
Alignment:
Q  363 cctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatata 418  Q
    ||||||||||||||| |||||||| |||||||| ||||||| | ||||||||||||    
T  38125654 cctccgtccctatatgtaagcacccttttattagaggcaaaaggtgcttacatata 38125599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 37009433 - 37009379
Alignment:
Q  364 ctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatata 418  Q
    |||||||| ||||| |||| || ||||||||||||||||| ||| ||||||||||    
T  37009433 ctccgtccttatatgtaagtacttttttattaaaggcaaaagatacttacatata 37009379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 32564899 - 32564842
Alignment:
Q  363 cctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    ||||||||||||||| |||||||| |||||||| ||||||||  ||||||||||||||    
T  32564899 cctccgtccctatatgtaagcacccttttattagaggcaaagagtgcttacatatagg 32564842  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 420
Target Start/End: Complemental strand, 4473123 - 4473071
Alignment:
Q  368 gtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    |||||||||| ||||||||||||||||| ||||||||  ||||||||||||||    
T  4473123 gtccctatatgtaagcacctttttattagaggcaaagagtgcttacatatagg 4473071  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 420
Target Start/End: Original strand, 7209063 - 7209120
Alignment:
Q  363 cctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    |||| |||||||||||||||||| ||||||||| || |||||  ||||||||||||||    
T  7209063 cctcagtccctatatctaagcacttttttattagagacaaagagtgcttacatatagg 7209120  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 42380621 - 42380564
Alignment:
Q  363 cctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    |||||||||||||||||||  ||| |||||||| ||||||||| ||||||||||||||    
T  42380621 cctccgtccctatatctaaaaacccttttattagaggcaaagggtgcttacatatagg 42380564  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 42380792 - 42380735
Alignment:
Q  363 cctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    |||| ||||||||||||||  ||| |||||||| ||||||||||||||||||||||||    
T  42380792 cctctgtccctatatctaataacccttttattagaggcaaaggatgcttacatatagg 42380735  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 42409335 - 42409278
Alignment:
Q  363 cctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    |||||||||||||||||||  ||| |||||||| ||||||||| ||||||||||||||    
T  42409335 cctccgtccctatatctaaaaacccttttattagaggcaaagggtgcttacatatagg 42409278  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 363 - 420
Target Start/End: Complemental strand, 42409506 - 42409449
Alignment:
Q  363 cctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    |||| ||||||||||||||  ||| |||||||| ||||||||||||||||||||||||    
T  42409506 cctctgtccctatatctaataacccttttattagaggcaaaggatgcttacatatagg 42409449  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 23505573 - 23505629
Alignment:
Q  362 tcctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatata 418  Q
    ||||||||| |||||||||| |||| |||||||||||||||||| ||||||| ||||    
T  23505573 tcctccgtctctatatctaaacacccttttattaaaggcaaagggtgcttacgtata 23505629  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 504661 - 504606
Alignment:
Q  363 cctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatata 418  Q
    ||||||||||||||| ||||||||||||||||| || |||| | ||||||||||||    
T  504661 cctccgtccctatatgtaagcacctttttattagagacaaaaggtgcttacatata 504606  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 418
Target Start/End: Complemental strand, 21743082 - 21743029
Alignment:
Q  365 tccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatata 418  Q
    |||||||||||||||||||||  |||||||| ||||||||  ||||||||||||    
T  21743082 tccgtccctatatctaagcactcttttattagaggcaaagagtgcttacatata 21743029  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 30264620 - 30264571
Alignment:
Q  363 cctccgtccctatatctaagcacctttttattaaaggcaaaggatgctta 412  Q
    |||||||||||||||||||||||  |||||||| ||||||| ||||||||    
T  30264620 cctccgtccctatatctaagcactcttttattagaggcaaatgatgctta 30264571  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 8564964 - 8564909
Alignment:
Q  363 cctccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatata 418  Q
    ||||||||||||||| ||||||||||||||||| | | |||  |||||||||||||    
T  8564964 cctccgtccctatatgtaagcacctttttattagaagaaaaaaatgcttacatata 8564909  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 420
Target Start/End: Complemental strand, 39841528 - 39841473
Alignment:
Q  365 tccgtccctatatctaagcacctttttattaaaggcaaaggatgcttacatatagg 420  Q
    ||||||| ||||||||| || |||||||||| || |||| ||||||||||||||||    
T  39841528 tccgtccttatatctaaacaactttttattatagacaaatgatgcttacatatagg 39841473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 372 - 418
Target Start/End: Original strand, 32147121 - 32147167
Alignment:
Q  372 ctatatctaagcacctttttattaaaggcaaaggatgcttacatata 418  Q
    |||||||||| |||| |||||||| ||||||| ||||||||||||||    
T  32147121 ctatatctaaacaccattttattagaggcaaatgatgcttacatata 32147167  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 418
Target Start/End: Original strand, 16725036 - 16725081
Alignment:
Q  373 tatatctaagcacctttttattaaaggcaaaggatgcttacatata 418  Q
    ||||| |||||||| |||||||| ||||||| ||||||||||||||    
T  16725036 tatatgtaagcacccttttattagaggcaaatgatgcttacatata 16725081  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 416
Target Start/End: Original strand, 6865227 - 6865270
Alignment:
Q  373 tatatctaagcacctttttattaaaggcaaaggatgcttacata 416  Q
    |||||||||||||| |||||||| | ||||||||||||||||||    
T  6865227 tatatctaagcacccttttattagatgcaaaggatgcttacata 6865270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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