View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5974-Insertion-4 (Length: 506)

Name: NF5974-Insertion-4
Description: NF5974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5974-Insertion-4
NF5974-Insertion-4
[»] chr1 (13 HSPs)
chr1 (11-506)||(11839265-11839758)
chr1 (105-403)||(2987756-2988055)
chr1 (234-400)||(17993884-17994052)
chr1 (98-403)||(4651924-4652242)
chr1 (98-174)||(37582481-37582557)
chr1 (98-141)||(23770883-23770926)
chr1 (305-403)||(35250113-35250212)
chr1 (98-150)||(28394760-28394812)
chr1 (106-205)||(17033942-17034041)
chr1 (100-149)||(19599054-19599102)
chr1 (134-195)||(38546845-38546906)
chr1 (144-176)||(11838795-11838827)
chr1 (106-154)||(47295357-47295405)
[»] chr5 (11 HSPs)
chr5 (99-400)||(31721825-31722124)
chr5 (98-210)||(31742507-31742619)
chr5 (110-239)||(24436142-24436270)
chr5 (102-195)||(36979271-36979363)
chr5 (286-353)||(31742361-31742429)
chr5 (254-330)||(24436031-24436109)
chr5 (265-332)||(36979124-36979191)
chr5 (106-215)||(8731276-8731385)
chr5 (106-186)||(26405181-26405262)
chr5 (305-353)||(39024278-39024327)
chr5 (122-195)||(13953896-13953971)
[»] chr3 (7 HSPs)
chr3 (106-403)||(30935011-30935325)
chr3 (98-403)||(1652502-1652822)
chr3 (99-169)||(7966695-7966763)
chr3 (98-143)||(22948259-22948304)
chr3 (98-150)||(26850916-26850968)
chr3 (106-203)||(823030-823128)
chr3 (102-174)||(34575041-34575113)
[»] chr2 (15 HSPs)
chr2 (105-389)||(9926373-9926653)
chr2 (98-215)||(6173843-6173960)
chr2 (245-403)||(18681210-18681372)
chr2 (98-403)||(31902038-31902350)
chr2 (312-403)||(12793575-12793667)
chr2 (244-403)||(915225-915389)
chr2 (98-171)||(34310198-34310271)
chr2 (106-210)||(22884747-22884852)
chr2 (98-165)||(915065-915132)
chr2 (98-149)||(18681531-18681582)
chr2 (106-205)||(33788259-33788358)
chr2 (120-186)||(4975112-4975178)
chr2 (120-186)||(4993020-4993086)
chr2 (106-215)||(25504522-25504631)
chr2 (153-209)||(18681423-18681478)
[»] chr7 (6 HSPs)
chr7 (98-399)||(9349858-9350167)
chr7 (98-403)||(38485700-38486020)
chr7 (283-400)||(46133098-46133209)
chr7 (98-205)||(48058298-48058405)
chr7 (106-179)||(47456707-47456780)
chr7 (305-347)||(12481081-12481123)
[»] chr6 (7 HSPs)
chr6 (98-389)||(26215648-26215940)
chr6 (100-403)||(12794249-12794570)
chr6 (98-242)||(27774906-27775049)
chr6 (287-391)||(21266263-21266367)
chr6 (98-237)||(9224249-9224388)
chr6 (106-205)||(16180490-16180589)
chr6 (106-210)||(3880245-3880350)
[»] chr8 (10 HSPs)
chr8 (101-345)||(30235745-30236004)
chr8 (159-403)||(41790955-41791200)
chr8 (231-399)||(32945468-32945636)
chr8 (98-219)||(5214933-5215053)
chr8 (234-399)||(10552416-10552578)
chr8 (98-170)||(35062842-35062914)
chr8 (261-403)||(35062602-35062744)
chr8 (99-218)||(10552604-10552722)
chr8 (109-162)||(41790570-41790623)
chr8 (98-209)||(32945324-32945434)
[»] chr4 (7 HSPs)
chr4 (98-219)||(19432372-19432493)
chr4 (98-243)||(35800752-35800898)
chr4 (102-239)||(43373724-43373858)
chr4 (98-150)||(47105164-47105216)
chr4 (234-276)||(43373868-43373910)
chr4 (98-150)||(16502099-16502151)
chr4 (106-150)||(21983508-21983552)


Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 506
Target Start/End: Complemental strand, 11839758 - 11839265
Alignment:
Q  11 cttgttaaacttcccatttacaaaatttcttttcttactatcatcaaaattctttttagacacccgagcttgtaaggcnnnnnnnnnaatcagcaaaatt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||          |||||||||||||    
T  11839758 cttgttaaacttcccatttacaaaatttcttttcttactatcatgaaaattctttttagacacatgagcttgtaagg-tttttttttaatcagcaaaatt 11839660  T
Q  111 ttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaatacccaaaaacaaac 210  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  11839659 ttattaaaaatcaggtctctgcacaagacgaacaaagacctgtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaacacccaaaaacaaat 11839560  T
Q  211 cccaacaaatacattcatgcgatcaacacccatcaaaataaacatcacctcctaaaactgattcctaaacttaccaaccactgaaaatacgacttccata 310  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| || || ||||||    
T  11839559 cccaacaaatacattcctgcgatcaacacccatcaaaataaacatcatctcctaaaactgattcctaaacttaccgaccactaaaaa-acaacatccata 11839461  T
Q  311 acactcttcgccactactcaccccaaaagaacaccttgtaaaaaagaactcaatcctcatccccaacaccgagccacatccgaagaactccttgtaaggc 410  Q
    |||||||| ||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  11839460 acactctttgccaccactcaccccaaaagaacatcttgtaaaagagaactcaatcctcatccccaacatcgagccacatccaaagaactccttgtaaggc 11839361  T
Q  411 ttgatctactttcctctcagcacctctgccaattaccctgagcacatgagcctctaaagaaccttgaagctcttctacaatcattttcactaatgt 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11839360 ttgatctactttcctctcagcacctctgccaattaccctgagcacatgagcctctaaagaactttgaagctcttctacaatcattttcactaatgt 11839265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 105 - 403
Target Start/End: Original strand, 2987756 - 2988055
Alignment:
Q  105 aaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaatacccaaaa 204  Q
    |||||||||||||||||||||||||| |||||||| || | | |||  | |||| ||||||||||||||| |||| |||||| | |||||| | || |||    
T  2987756 aaaattttattaaaaatcaggtctctacacaagacaaatagataccgatattaccgaaagtacaaactaa-ggcgccgtatataggcggaacatccgaaa 2987854  T
Q  205 acaaaccccaacaaatacattcatgcgatcaacacccatcaaaataaacatcacctcctaaaactgattcctaaacttaccaaccactg-aaaatacgac 303  Q
    |||||| |||||||| |||  | ||| ||||||||||| ||||||||||||||||  |||||||||| || || ||||||||||||||| |||| | |||    
T  2987855 acaaacaccaacaaaaacacccctgcaatcaacacccaccaaaataaacatcacccactaaaactgactcatatacttaccaaccactgaaaaaaatgac 2987954  T
Q  304 ttccataacactcttcgccactactcaccccaaaagaaca-ccttgtaaaaaagaactcaatcctcatccccaacaccgagccacatccgaagaactcct 402  Q
     | |||||||||| |||| ||| | |||| | |||||||| |||||||||| |||||    |||||||| ||||||||||||||||||||||||||||||    
T  2987955 attcataacactcgtcgcaacttcgcacctctaaagaacacccttgtaaaagagaaccatgtcctcatcaccaacaccgagccacatccgaagaactcct 2988054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 234 - 400
Target Start/End: Original strand, 17993884 - 17994052
Alignment:
Q  234 caacacccatcaaaataaacatcacctcctaaaactgattcctaaacttaccaaccactg-aaaatacgacttccataacactcttcgccactactcacc 332  Q
    ||||||||| |||||||||||||||| | ||||| ||||||||||||||||| ||||||| |||| |||||   ||||||| || ||| |||| ||||||    
T  17993884 caacacccaccaaaataaacatcaccccttaaaagtgattcctaaacttacctaccactgaaaaaaacgacactcataacagtcatcgtcactgctcacc 17993983  T
Q  333 ccaaaagaaca-ccttgtaaaaaagaactcaatcctcatccccaacaccgagccacatccgaagaactc 400  Q
    ||||||||||| |||||||| |  |||| ||||||||||| |||||| |||||||||||||||||||||    
T  17993984 ccaaaagaacacccttgtaatagggaacccaatcctcatcaccaacatcgagccacatccgaagaactc 17994052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 98 - 403
Target Start/End: Complemental strand, 4652242 - 4651924
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaata 197  Q
    ||||||||||||||||||||||| || || ||||||||||||||| | ||||| |||||| |||||||||||||||| | |  |||||| | |||||| |    
T  4652242 aatcagcaaaattttattaaaaaccaagtttctgcacaagacgaagagagaccggtgttatagaaagtacaaactaa-gacaccgtatataggcggaaca 4652144  T
Q  198 cccaaaaacaaaccccaacaaatacattcatgcgatcaacacccat---------------caaaataaacatcacctcctaaaactgattcctaaactt 282  Q
    ||  ||||||||| |||||||| | |  | || |||||||||||||               |||| ||||||||  |||||| |||||| ||||| | ||    
T  4652143 cctgaaaacaaacaccaacaaaaaaaaccctgtgatcaacacccataagtacaacacccaacaaactaaacatc--ctcctacaactgactcctatagtt 4652046  T
Q  283 accaaccactgaaaatacgacttccataacactcttcgccactactcaccccaaaagaaca-ccttgtaaaaaagaactcaatcctcatccccaacaccg 381  Q
    ||||||||||||||| ||||| || | ||||||| || |||| ||||||| |||||||||| |||||||||| |||||  | ||| |||| ||||||  |    
T  4652045 accaaccactgaaaaaacgacatctaaaacactcgtcaccacaactcacctcaaaagaacacccttgtaaaagagaaccaagtccccatcaccaacaatg 4651946  T
Q  382 agccacatccgaagaactcctt 403  Q
    ||||||||||||||||||||||    
T  4651945 agccacatccgaagaactcctt 4651924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 37582557 - 37582481
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaa 174  Q
    ||||||||||||||||||||||| || |||||||||||||||||||| ||||    |||| ||||||||||||||||    
T  37582557 aatcagcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatacgttatagaaagtacaaactaa 37582481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 23770926 - 23770883
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacga 141  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  23770926 aatcagcaaaattttattaaaaaccaggtctctgcacaagacga 23770883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 403
Target Start/End: Original strand, 35250113 - 35250212
Alignment:
Q  305 tccataacactcttcgccactactcaccccaaaagaaca-ccttgtaaaaaagaactcaatcctcatccccaacaccgagccacatccgaagaactcctt 403  Q
    ||||||| |||| ||||||||||||||| |||||||||| |||||||||| ||||  || ||||||||  |||||  | ||||| |||||||||||||||    
T  35250113 tccataaaactcgtcgccactactcacctcaaaagaacatccttgtaaaagagaatccagtcctcatcttcaacaatgtgccacctccgaagaactcctt 35250212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 28394760 - 28394812
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagacc 150  Q
    ||||||||||||||||||||||| ||  |||||| |||| |||||||||||||    
T  28394760 aatcagcaaaattttattaaaaaccaaatctctgtacaaaacgaacaaagacc 28394812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 205
Target Start/End: Complemental strand, 17034041 - 17033942
Alignment:
Q  106 aaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaatacccaaaaa 205  Q
    |||||||| |||||| ||  ||| ||| ||||| ||||| ||||| ||| | |||| | ||||||| |||||||||||||| |||||||| |||| ||||    
T  17034041 aaattttagtaaaaaccaaatctatgctcaagatgaacatagaccggtgattcagataatacaaacaaaaggcgtcgtatataagcggaacacccgaaaa 17033942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 19599102 - 19599054
Alignment:
Q  100 tcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagac 149  Q
    |||||||||||| |||||||| ||| ||||||| ||||||||||||||||    
T  19599102 tcagcaaaattt-attaaaaaccagatctctgctcaagacgaacaaagac 19599054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 38546845 - 38546906
Alignment:
Q  134 caagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaa 195  Q
    ||||||||||||||| ||||| | |||| ||||||||||||| | |||||||| | ||||||    
T  38546845 caagacgaacaaagatcagtgattcagagagtacaaactaaatgtgtcgtatataggcggaa 38546906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 176
Target Start/End: Original strand, 11838795 - 11838827
Alignment:
Q  144 aaagaccagtgttacagaaagtacaaactaaag 176  Q
    |||||||||||||||| ||||||||||||||||    
T  11838795 aaagaccagtgttacataaagtacaaactaaag 11838827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 47295357 - 47295405
Alignment:
Q  106 aaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtg 154  Q
    |||||||||||||||  |  ||||||| |||||||||||||||||||||    
T  47295357 aaattttattaaaaactatatctctgctcaagacgaacaaagaccagtg 47295405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 99 - 400
Target Start/End: Complemental strand, 31722124 - 31721825
Alignment:
Q  99 atcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaatac 198  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||  |||||||||||||||||||| |||||| |||||| |  ||||| ||    
T  31722124 atcagcaaaattttattaaaaatcaggtctttgcacaagacgaacagagaccgatgttacagaaagtacaaact-aaggcgccgtatatagacggaacac 31722026  T
Q  199 ccaaaaacaaaccccaacaaatacattcatgcgatcaacacccatcaaaataaacatcacctcctaaaactgattcctaaacttaccaaccactgaaaat 298  Q
    || ||||||||| | ||||||  ||  |||| |||||||||||| |||||||||||||||  ||||||||||| ||||| |||||||||||||||||||     
T  31722025 ccgaaaacaaacactaacaaaggcacccatgtgatcaacacccaccaaaataaacatcac--cctaaaactgactcctatacttaccaaccactgaaaaa 31721928  T
Q  299 acgacttccataacactcttcgccactactcaccccaaaagaaca-ccttgtaaaaaagaactcaatcctcatccccaacaccgagccacatccgaagaa 397  Q
    ||||| |||||||||||| ||||||||||||||| ||||| |||| |||||||||| |||||||| ||||| || |||||| |||||||||||| |||||    
T  31721927 acgacatccataacactcgtcgccactactcacctcaaaaaaacacccttgtaaaagagaactcagtcctcgtcaccaacatcgagccacatccaaagaa 31721828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 31742619 - 31742507
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaata 197  Q
    ||||||||||||||||||||||| | | || |||||||||||||||| ||||| ||||||||  |||||||||| ||||||| |||||| | |||||| |    
T  31742619 aatcagcaaaattttattaaaaacctgatccctgcacaagacgaacagagaccggtgttacaagaagtacaaacaaaaggcgccgtatataggcggaaca 31742520  T
Q  198 cccaaaaacaaac 210  Q
    ||| |||||||||    
T  31742519 cccgaaaacaaac 31742507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 110 - 239
Target Start/End: Complemental strand, 24436270 - 24436142
Alignment:
Q  110 tttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaatacccaaaaacaaa 209  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||  ||||||||||||| ||| |||| |||| |  ||||| | || ||||||||    
T  24436270 tttattaaaaatcaggtctctgcacaagacgaataaagaccggtgttatggaaagtacaaact-aagacgtcatatatagtcggaacatccgaaaacaaa 24436172  T
Q  210 ccccaacaaatacattcatgcgatcaacac 239  Q
    | | |||||| ||| || | ||||||||||    
T  24436171 cactaacaaagacactcctacgatcaacac 24436142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 36979363 - 36979271
Alignment:
Q  102 agcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaa 195  Q
    |||||||| ||||||||| |||||||||||||||||||||||| ||||| |||||| ||||| || ||||| |||| |||||||| | ||||||    
T  36979363 agcaaaatattattaaaagtcaggtctctgcacaagacgaacagagaccggtgttaaagaaaatataaact-aaggtgtcgtatatatgcggaa 36979271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 286 - 353
Target Start/End: Complemental strand, 31742429 - 31742361
Alignment:
Q  286 aaccactgaaaatacgacttccataacactcttcgccactactcaccccaaaagaaca-ccttgtaaaa 353  Q
    |||||||||||| ||||  |||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  31742429 aaccactgaaaaaacgatatccataacacccatcgccactactcaccccaaaagaacacccttgtaaaa 31742361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 330
Target Start/End: Complemental strand, 24436109 - 24436031
Alignment:
Q  254 atcacctcctaaaactgattcctaaacttaccaaccactg--aaaatacgacttccataacactcttcgccactactca 330  Q
    ||||||||| ||| |||| |||||||||||||||||||||  |||| ||||| || ||||||||| |||||||||||||    
T  24436109 atcacctccgaaagctgactcctaaacttaccaaccactgaaaaaaaacgacatctataacactcgtcgccactactca 24436031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 36979191 - 36979124
Alignment:
Q  265 aaactgattcctaaacttaccaaccactgaaaatacgacttccataacactcttcgccactactcacc 332  Q
    ||||||| || || ||||||||||||||||||| || || |||| ||||||  |||||||||||||||    
T  36979191 aaactgactcttatacttaccaaccactgaaaaaacaacatccaaaacactggtcgccactactcacc 36979124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 215
Target Start/End: Complemental strand, 8731385 - 8731276
Alignment:
Q  106 aaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaatacccaaaaa 205  Q
    ||||||||||||||||||| || |||| |||||| |||| | ||| ||| | |||| | ||||||| ||||||| |||||| |  || || |||||||||    
T  8731385 aaattttattaaaaatcagatccctgctcaagacaaacagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacacccaaaaa 8731286  T
Q  206 caaaccccaa 215  Q
     |||| ||||    
T  8731285 taaacaccaa 8731276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 26405181 - 26405262
Alignment:
Q  106 aaattttattaaa-aatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtata 186  Q
    ||||||||||||| || ||| | ||||| ||||||||||||||||| |||  || || | ||||||| ||||||||||||||    
T  26405181 aaattttattaaacaaccagatttctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaggcgtcgtata 26405262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 39024278 - 39024327
Alignment:
Q  305 tccataacactcttcgccactactcaccccaaaagaaca-ccttgtaaaa 353  Q
    |||||||||||| ||| |||||||||||| ||||||||| ||||||||||    
T  39024278 tccataacactcatcgtcactactcaccctaaaagaacacccttgtaaaa 39024327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 13953896 - 13953971
Alignment:
Q  122 caggtctctgcacaagacgaacaaagaccagtgt--tacagaaagtacaaactaaaggcgtcgtataaaagcggaa 195  Q
    ||||||||||| ||||||||||| ||||| ||||   || || ||||||||||||||||| |||||| | ||||||    
T  13953896 caggtctctgctcaagacgaacagagaccggtgtgaaactgagagtacaaactaaaggcgccgtatataggcggaa 13953971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 5e-51; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 106 - 403
Target Start/End: Original strand, 30935011 - 30935325
Alignment:
Q  106 aaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaatacccaaaaa 205  Q
    |||||| ||||||||||||||||||| |||||||||||| ||||| || |||| |||| |||||||||| || |||||||| ||||| || |||| ||||    
T  30935011 aaatttaattaaaaatcaggtctctgtacaagacgaacagagaccggtcttactgaaaatacaaactaa-ggtgtcgtatataagcgaaacacccgaaaa 30935109  T
Q  206 caaaccccaacaaatacattcatgcgatcaacacccat---------------caaaataaacatcacctcctaaaactgattcctaaacttaccaacca 290  Q
    ||||| |||||||| |||  | ||  |||||||||| |               |||||||||||||||| ||||||||||| || || |||||||| |||    
T  30935110 caaacaccaacaaagacaaccctgtaatcaacacccttaagagcaacatccaccaaaataaacatcaccccctaaaactgactcttatacttaccagcca 30935209  T
Q  291 ctg--aaaatacgacttccataacactcttcgccactactcaccccaaaagaacacc-ttgtaaaaaagaactcaatcctcatccccaacaccgagccac 387  Q
    | |  |||| ||||| || ||||||||| ||||||||||||||| |||||||||||| |||||||| |||||||| |||||||| |||||||||||||||    
T  30935210 ccggaaaaaaacgacatctataacactcgtcgccactactcacctcaaaagaacacccttgtaaaagagaactcagtcctcatcaccaacaccgagccac 30935309  T
Q  388 atccgaagaactcctt 403  Q
    ||||||||||||||||    
T  30935310 atccgaagaactcctt 30935325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 98 - 403
Target Start/End: Original strand, 1652502 - 1652822
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaata 197  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||| |||||  ||| |||||||||||||||||||||||||||||| | |||||| |    
T  1652502 aatcagcaaaattttattaaaaattaggtctctgcacaagacaaacagagaccgatgtcacagaaagtacaaactaaaggcgtcgtatataggcggaaca 1652601  T
Q  198 cccaaaaacaaaccccaacaaatacattcatgcgat---------------caacacccatcaaaataaacatcacctcctaaaactgattcctaaactt 282  Q
    |||  ||| |||| || ||||| |||  | ||||||               ||||||||| |||||||||||||||| ||||||||||| | |||   ||    
T  1652602 ccc-gaaataaacacccacaaagacacccttgcgatcaacactcataaggacaacacccaccaaaataaacatcaccccctaaaactgacttctatgttt 1652700  T
Q  283 accaaccactgaaaatacgacttccataacactcttcgccactactcaccccaaaagaaca-ccttgtaaaaaagaactcaatcctcatccccaacaccg 381  Q
    | |||||||| |||| ||||| | |||||||||| ||| ||||||||||| |||||||||| ||||| |||| || |  || |||| ||| |||||||||    
T  1652701 aacaaccactaaaaaaacgacattcataacactcatcgtcactactcacctcaaaagaacacccttgaaaaagaggaaccattccttatcaccaacaccg 1652800  T
Q  382 agccacatccgaagaactcctt 403  Q
    ||||| || ||| |||||||||    
T  1652801 agccaaattcgaggaactcctt 1652822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 7966695 - 7966763
Alignment:
Q  99 atcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaa 169  Q
    |||||||||||||||||||||||||||||||  ||||| ||||||| ||| | ||||||||||||||||||    
T  7966695 atcagcaaaattttattaaaaatcaggtctc--cacaatacgaacagagatccgtgttacagaaagtacaa 7966763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 22948259 - 22948304
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaac 143  Q
    ||||||||||| ||||||||||||| | ||||||||||||||||||    
T  22948259 aatcagcaaaagtttattaaaaatccgatctctgcacaagacgaac 22948304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 26850968 - 26850916
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagacc 150  Q
    |||||||||||||||||| |||||||| ||  ||||||||||||||| |||||    
T  26850968 aatcagcaaaattttattgaaaatcagatccttgcacaagacgaacagagacc 26850916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 823030 - 823128
Alignment:
Q  106 aaattttattaaaaatc-aggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaatacccaaa 203  Q
    ||||||||||||||| | || || |||| ||||||||||| ||||| ||| | |||| | |||||  ||||||||||||||| ||| |||| |||||||    
T  823030 aaattttattaaaaaaccagatcgctgctcaagacgaacagagaccggtgattcagagactacaagttaaaggcgtcgtatataaggggaacacccaaa 823128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 34575113 - 34575041
Alignment:
Q  102 agcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaa 174  Q
    ||||||||||| ||||||||| ||||| |||| ||||| |||| | | |  ||||||| ||||||||||||||    
T  34575113 agcaaaattttgttaaaaatccggtctttgcataagacaaacagaaaacgctgttacaaaaagtacaaactaa 34575041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 105 - 389
Target Start/End: Complemental strand, 9926653 - 9926373
Alignment:
Q  105 aaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaatacccaaaa 204  Q
    ||||||||||||||||  |||||||||||||||||||||| ||||  |||||||| ||||||||||   |||||  |||||| |  ||||| || | |||    
T  9926653 aaaattttattaaaaactaggtctctgcacaagacgaacagagacg-gtgttacaaaaagtacaaat--aaggctccgtatatagacggaacactcgaaa 9926557  T
Q  205 acaaaccccaacaaatacattcatgcgatcaacacccatcaaaataaacatcacct-cctaaaactgattcctaaacttaccaaccactgaaaatacgac 303  Q
    | |||| ||||||||||||  | ||| ||||||||||| ||||||||||||||||  ||||||||||| ||||| ||||||| |||||||||||   |||    
T  9926556 ataaacaccaacaaatacaccc-tgccatcaacacccaccaaaataaacatcacccgcctaaaactgactcctatacttaccgaccactgaaaaa--gac 9926460  T
Q  304 ttccataacactcttcgccactactcaccccaaaagaaca-ccttgtaaaaaagaactcaatcctcatccccaacaccgagccacat 389  Q
     |||||||||||| ||||||||||||||| ||||| |||| |||||||||| ||||| || |||||||| |||||| ||||||||||    
T  9926459 atccataacactcgtcgccactactcacctcaaaaaaacacccttgtaaaagagaacccagtcctcatcaccaacaacgagccacat 9926373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 6173843 - 6173960
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaata 197  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||| ||||||||||||||||| | ||||||| | | |||| |    
T  6173843 aatcagcaaaattttattaaaaatcagatctctgcacaagacgaactgagaccagtgttacggaaagtacaaactaaagacatcgtatataggtggaaca 6173942  T
Q  198 cccaaaaacaaaccccaa 215  Q
    ||||||||||||| ||||    
T  6173943 cccaaaaacaaacaccaa 6173960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 245 - 403
Target Start/End: Complemental strand, 18681372 - 18681210
Alignment:
Q  245 aaaataaacatcacctcctaaaactgattcctaaacttaccaaccact---gaaaatacgacttccataacactcttcgccactactcaccccaaaagaa 341  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||||||    |||| ||||| |||| ||||||| ||||||| ||||||| ||||||||    
T  18681372 aaaataaacatcaccccctaaaactgactcctatacttaccaaccactaaaaaaaacacgacatccaaaacactcgtcgccaccactcacctcaaaagaa 18681273  T
Q  342 ca-ccttgtaaaaaagaactcaatcctcatccccaacaccgagccacatccgaagaactcctt 403  Q
    || |||||||||| |||||  | |||||||| ||||||  |||||||||||||||| ||||||    
T  18681272 cacccttgtaaaagagaacctagtcctcatcaccaacattgagccacatccgaagagctcctt 18681210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 403
Target Start/End: Original strand, 31902038 - 31902350
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaata 197  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||| ||||| ||||||||||||||||||| | || ||| |||||| | |  ||| |    
T  31902038 aatcagcaaaattttattaaaaacgaggtctctgcccaagacgaacagagaccggtgttacagaaagtacaaa-tcaaagcgccgtatataggtagaaca 31902136  T
Q  198 cccaaaaacaaaccccaacaaatacattcatgcgatcaacac--------------ccatcaaaataaacatcacctcctaaaactgattcctaaactta 283  Q
    ||| ||||| ||| ||||| ||  ||  | ||||||||||||              | |||||||||||||||| | | ||||||||| ||||| ||| |    
T  31902137 cccgaaaactaacaccaaccaaggcaaccctgcgatcaacaccaataaggacaactctatcaaaataaacatcaacccataaaactgactcctatactaa 31902236  T
Q  284 ccaaccactgaaaatacgacttccataacactcttcgccactactcaccccaaaagaacaccttgtaaaaaagaactcaatcctcatccccaacaccgag 383  Q
    ||||||| |||||| ||||| ||   ||||||| ||||||||||| |||      ||||||||||||||| |||||  | |||||| | ||||||| |||    
T  31902237 ccaaccagtgaaaaaacgacatctgaaacactcgtcgccactactaacc------gaacaccttgtaaaagagaaccaagtcctcaacaccaacactgag 31902330  T
Q  384 ccacatccgaagaactcctt 403  Q
     |||||||||||||||||||    
T  31902331 tcacatccgaagaactcctt 31902350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 312 - 403
Target Start/End: Original strand, 12793575 - 12793667
Alignment:
Q  312 cactcttcgccactactcaccccaaaagaacacctt-gtaaaaaagaactcaatcctcatccccaacaccgagccacatccgaagaactcctt 403  Q
    ||||| || |||||||||||| |||||||||||||| |||||| |||||| | | |||||| |||||||||||||||||||||||||||||||    
T  12793575 cactcgtcaccactactcacctcaaaagaacacctttgtaaaagagaacttacttctcatcaccaacaccgagccacatccgaagaactcctt 12793667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 403
Target Start/End: Original strand, 915225 - 915389
Alignment:
Q  244 caaaataaacatcacctcctaaaactgattcctaaacttaccaaccactgaaaatacgacttccataacactcttcgccactactcaccccaaaagaa-- 341  Q
    |||||||||||||| | ||||||| |||||||| ||||| || ||||||||||| | ||| ||||||||  || ||||||||  |||    |||| ||      
T  915225 caaaataaacatcatcccctaaaagtgattcctgaacttgcctaccactgaaaaaatgacatccataacggtcatcgccactgttcaaaaaaaaaaaaac 915324  T
Q  342 ca---ccttgtaaaaaagaactcaatcctcatccccaacaccgagccacatccgaagaactcctt 403  Q
    ||   |||||||| | ||||| ||||||||||| ||||||| |||| ||||||||||||||||||    
T  915325 caaacccttgtaatagagaacccaatcctcatcaccaacactgagcaacatccgaagaactcctt 915389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 34310198 - 34310271
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaac 171  Q
    ||||||||||||||||||| | ||||| || |||||||||||||||| ||| | || ||||||||| |||||||    
T  34310198 aatcagcaaaattttattatacatcagatccctgcacaagacgaacatagatcggtattacagaaaatacaaac 34310271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 22884747 - 22884852
Alignment:
Q  106 aaattttatt-aaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaatacccaaaa 204  Q
    |||||||||| ||||| ||  ||||||| |||||||||||||||||   | || ||| | |||||||||||||||||||||| | |||||| |||| |||    
T  22884747 aaattttatttaaaaaccaaatctctgctcaagacgaacaaagaccgacgatatagagaatacaaactaaaggcgtcgtatataggcggaacacccgaaa 22884846  T
Q  205 acaaac 210  Q
    | ||||    
T  22884847 ataaac 22884852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 915065 - 915132
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagt 165  Q
    |||||||||||||||||||| ||  |||||||| ||||||| ||||| ||| | |||||||| |||||    
T  915065 aatcagcaaaattttattaataactaggtctctacacaagatgaacagagatcggtgttacaaaaagt 915132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 18681582 - 18681531
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagac 149  Q
    ||||||||||||||||||||||  |||| |||||||||| |||||| |||||    
T  18681582 aatcagcaaaattttattaaaatccaggcctctgcacaaaacgaactaagac 18681531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 33788259 - 33788358
Alignment:
Q  106 aaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaatacccaaaaa 205  Q
    |||||||||| |||| ||  |||||||  |||||||||| ||||| ||| ||| || | ||||||||||||||| |||||| | |||||| |||| ||||    
T  33788259 aaattttatttaaaaccaaatctctgctaaagacgaacagagaccggtgataccgagaatacaaactaaaggcgccgtatatatgcggaacacccgaaaa 33788358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 4975178 - 4975112
Alignment:
Q  120 atcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtata 186  Q
    ||||||||||||| ||||||||||| |||| ||||  ||  | | ||||||||||||||||||||||    
T  4975178 atcaggtctctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtata 4975112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 4993086 - 4993020
Alignment:
Q  120 atcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtata 186  Q
    ||||||||||||| ||||||||||| |||| ||||  ||  | | ||||||||||||||||||||||    
T  4993086 atcaggtctctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtata 4993020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 25504522 - 25504631
Alignment:
Q  106 aaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaatacccaaaaa 205  Q
    ||||||||||||||||||| || |||| |||||| |||| | ||| ||| | |||| | ||||||| ||||||| |||||| |  || || |||||||||    
T  25504522 aaattttattaaaaatcagatccctgctcaagacaaacagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacacccaaaaa 25504621  T
Q  206 caaaccccaa 215  Q
     |||| ||||    
T  25504622 taaacaccaa 25504631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 18681478 - 18681423
Alignment:
Q  153 tgttacagaaagtacaaactaaaggcgtcgtataaaagcggaatacccaaaaacaaa 209  Q
    |||||||||||||||||||| |||| |||||||| | |||||| |||| ||||||||    
T  18681478 tgttacagaaagtacaaact-aaggtgtcgtatataggcggaacacccgaaaacaaa 18681423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 98 - 399
Target Start/End: Complemental strand, 9350167 - 9349858
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaata 197  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||| | |||||||| ||||||||||| || |||| |||||| | |||||| |    
T  9350167 aatcagcaaaattttattaaaaaccaggtctctgcacaagacgaacagagatcggtgttacaaaaagtacaaaccaa-ggcgccgtatataggcggaaca 9350069  T
Q  198 cccaaaaacaaaccccaacaaatacattcatgcgatcaacacccat---------------caaaataaacatcacctcctaaaactgattcctaaactt 282  Q
    ||   ||| || | |||||||| |||  | ||| |||||| |||||               ||||||||||||| ||  ||||||||    |||| ||||    
T  9350068 cctggaaaaaatcaccaacaaagacacccctgcaatcaacccccataaggacaacacccaccaaaataaacatcccc--ctaaaact----cctatactt 9349975  T
Q  283 accaaccactgaaaatacgacttccataacactcttcgccactactcaccccaaaagaacacc-ttgtaaaaaagaactcaatcctcatccccaacaccg 381  Q
    ||||||||||  ||| ||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| |||| |||||| |||||||||    
T  9349974 accaaccactagaaa-acgacatccataacactcgtcgccactactcaccccaaaagaacacccttgtaaaagagaacacaatactcatcaccaacaccg 9349876  T
Q  382 agccacatccgaagaact 399  Q
    ||||||||||||||||||    
T  9349875 agccacatccgaagaact 9349858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 98 - 403
Target Start/End: Complemental strand, 38486020 - 38485700
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaata 197  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||  ||||||||||||||| ||||| ||||||||||| | | |||||| |    
T  38486020 aatcagcaaaattttattaaaaatcaggtctctgctcaagacgaacagagactggtgttacagaaagtataaact-aaggcgtcgtaaataggcggaaca 38485922  T
Q  198 cccaaaaacaaaccccaacaaatacattcatgcgatcaacacccat-----caaaat-----aaac--atcacctcctaaaactgattcctaaacttacc 285  Q
    ||| ||||||||| |||||||| | |    ||||||||||||||||     ||| ||     ||||  | || || |||||||||| ||||| | |||||    
T  38485921 cccgaaaacaaacaccaacaaaaaaaactctgcgatcaacacccataagtacaacatccagcaaactaaacatcttctaaaactgactcctatagttacc 38485822  T
Q  286 aaccactg---aaaatacgacttccataacactcttcgccactactcaccccaaaagaacacc-ttgtaaaaaagaactcaatcctcatccccaacaccg 381  Q
    ||||||||   |||| | ||| |||| ||||||| ||||||| ||||||| |||||||||||| |||||||| |||||  | |||| ||| ||||||  |    
T  38485821 aaccactgaaaaaaaaatgacatccaaaacactcgtcgccacaactcacctcaaaagaacacctttgtaaaagagaaccaagtccttatcaccaacaatg 38485722  T
Q  382 agccacatccgaagaactcctt 403  Q
    ||||||||| ||||||||||||    
T  38485721 agccacatctgaagaactcctt 38485700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 283 - 400
Target Start/End: Original strand, 46133098 - 46133209
Alignment:
Q  283 accaaccactgaaaatacgacttccataacactcttcgccactactcaccccaaaagaacaccttgtaaaaaagaactcaatcctcatccccaacaccga 382  Q
    ||||||||||||||| ||||| |||| ||||||| | |||||||||||||       |||||||||||||| ||||| || || ||||| ||||||||||    
T  46133098 accaaccactgaaaaaacgacatccaaaacactcgttgccactactcacca------aacaccttgtaaaagagaacccagtcatcatcaccaacaccga 46133191  T
Q  383 gccacatccgaagaactc 400  Q
    | ||||||| ||||||||    
T  46133192 gtcacatccaaagaactc 46133209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 205
Target Start/End: Original strand, 48058298 - 48058405
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaata 197  Q
    ||||||||||||||||||||||| ||  ||||||| |||||| |||| ||||| |||  | ||| | ||||||| ||||||||| |||| | |||||| |    
T  48058298 aatcagcaaaattttattaaaaaccatatctctgctcaagacaaacagagaccggtgaaatagagaatacaaacgaaaggcgtcatatataggcggaaca 48058397  T
Q  198 cccaaaaa 205  Q
    ||| ||||    
T  48058398 ccctaaaa 48058405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 47456707 - 47456780
Alignment:
Q  106 aaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcg 179  Q
    ||||||||||||||| ||| ||||||| ||||||||||| ||||| |||  ||||||| ||||||  |||||||    
T  47456707 aaattttattaaaaaccagatctctgctcaagacgaacagagaccggtgaaacagaaaatacaaatgaaaggcg 47456780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 347
Target Start/End: Complemental strand, 12481123 - 12481081
Alignment:
Q  305 tccataacactcttcgccactactcaccccaaaagaacacctt 347  Q
    |||||||||| | ||| ||||||||||||||||||||||||||    
T  12481123 tccataacacccatcgtcactactcaccccaaaagaacacctt 12481081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 98 - 389
Target Start/End: Original strand, 26215648 - 26215940
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaata 197  Q
    ||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||| ||||||||||| |||||| |||||||   ||||| | |||||  |    
T  26215648 aatcagcaaaattttattaaaaaacaggtctatgcacaagatgaacagagaccaatgttacagaaaatacaaattaaaggcactgtatatatgcggacca 26215747  T
Q  198 cccaaaaacaaaccccaacaaatacattcatgcgatcaacacccatcaaaataaacatcacctcctaaaactgattcctaaacttaccaaccactgaa-a 296  Q
    ||  ||||||||| |||| ||| | |  |  ||| |||||||||| ||||||||||| |||| ||||||||||||||||| | ||||| | ||||||| |    
T  26215748 cctgaaaacaaacaccaataaagataccccagcggtcaacacccaccaaaataaacaacaccccctaaaactgattcctatatttaccga-cactgaaga 26215846  T
Q  297 atacgacttccataacactcttcgccactactcaccccaaaagaacacc-ttgtaaaaaagaactcaatcctcatccccaacaccgagccacat 389  Q
    | || || | |||||||||| || |||| ||||||| ||||||||||||  ||||||| ||||   | |||||||| ||||||| |||||||||    
T  26215847 aaacaacattcataacactcgtcaccacgactcacctcaaaagaacaccaatgtaaaagagaaactagtcctcatcaccaacactgagccacat 26215940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 100 - 403
Target Start/End: Complemental strand, 12794570 - 12794249
Alignment:
Q  100 tcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaatacc 199  Q
    |||||||||||||||||||||| || |||||||| |||| ||||| |||||  ||||  |||| |||||||||||||||| |||||| |  ||||| | |    
T  12794570 tcagcaaaattttattaaaaataagatctctgcataagatgaacagagaccgatgttttagaaggtacaaactaaaggcgccgtatatagacggaacatc 12794471  T
Q  200 caaaaacaaaccccaacaaatacattcatgcgatcaacacccat---------------caaaataaacatcacctcctaaaac--tgattcctaaactt 282  Q
    | ||||| ||| |||||||| |||    |||||||||||||||                |||||||||||||||  | ||||||  ||| ||||| ||||    
T  12794470 cgaaaacgaacaccaacaaagacacatctgcgatcaacacccaaaaggacaacatccaccaaaataaacatcacaccttaaaacgctgactcctatactt 12794371  T
Q  283 accaaccactgaaaatacgacttccataacactcttcgccactactcaccccaaaagaaca-ccttgtaaaaaagaactcaatcctcatccccaacaccg 381  Q
    | | ||||||||||| ||||| | |||||||||| | ||||||||||||| |||||||||| |||| ||||| ||||  || |||||| |||||||||||    
T  12794370 atcgaccactgaaaaaacgacattcataacactcattgccactactcacctcaaaagaacacccttataaaagagaaaccagtcctcaaccccaacaccg 12794271  T
Q  382 agccacatccgaagaactcctt 403  Q
    || |||||| |||||| |||||    
T  12794270 agtcacatctgaagaaatcctt 12794249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 242
Target Start/End: Complemental strand, 27775049 - 27774906
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaata 197  Q
    ||||||||||||||||||||||||||| ||| ||||  |||| |||| ||||| ||| |||| |||||||||||| ||||||||||||| |   |||| |    
T  27775049 aatcagcaaaattttattaaaaatcagatctttgcatgagacaaacatagaccggtgatacaaaaagtacaaact-aaggcgtcgtatatagatggaaca 27774951  T
Q  198 cccaaaaacaaaccccaacaaatacattcatgcgatcaacaccca 242  Q
     |||||||||||| |||||||| ||| || | |||||||||||||    
T  27774950 tccaaaaacaaacaccaacaaagacactcctacgatcaacaccca 27774906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 391
Target Start/End: Complemental strand, 21266367 - 21266263
Alignment:
Q  287 accactgaaaatacgacttccataacactcttcgccactactcaccccaaaagaacacc-ttgtaaaaaagaactcaatcctcatccccaacaccgagcc 385  Q
    ||||||||||| ||||| |||| ||||  | ||| |||||||||||||||| ||||||| |||||||| | ||||||||||||| | |||| || |||||    
T  21266367 accactgaaaa-acgacatccagaacaaccatcgtcactactcaccccaaaggaacaccgttgtaaaagaaaactcaatcctcaacaccaaaactgagcc 21266269  T
Q  386 acatcc 391  Q
    ||||||    
T  21266268 acatcc 21266263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 9224388 - 9224249
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaata 197  Q
    |||||||||||||||||||||||  |  || ||| |||||||||||| ||||  ||  || ||||||||||| | ||||| |||||||| |   |||| |    
T  9224388 aatcagcaaaattttattaaaaactaaatccctgtacaagacgaacagagactggtaataaagaaagtacaaccaaaaggtgtcgtatatagaaggaaca 9224289  T
Q  198 cccaaaaacaaaccccaacaaatacattcatgcgatcaac 237  Q
    ||| |||| |||| |||||||| |||| | ||||||||||    
T  9224288 cccgaaaataaacaccaacaaagacatccctgcgatcaac 9224249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 16180490 - 16180589
Alignment:
Q  106 aaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaatacccaaaaa 205  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| | |||  ||||| | ||||||  |||| |  |||||| |||||||| ||| |||||    
T  16180490 aaattttattaaaaatcagatctctgctcaagacgaacaaagatcggtgaaacagataatacaaatgaaagacaccgtatataagcggaacaccaaaaaa 16180589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 3880245 - 3880350
Alignment:
Q  106 aaattttattaaa-aatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaatacccaaaa 204  Q
    ||||||||||||| |||||| || |||| ||||||||||| ||||| |||  || |||| ||||||| |||||   |||||| |||||||| ||| ||||    
T  3880245 aaattttattaaacaatcagatccctgctcaagacgaacagagaccggtgaaactgaaaatacaaacaaaaggttccgtatataagcggaacaccaaaaa 3880344  T
Q  205 acaaac 210  Q
    | ||||    
T  3880345 ataaac 3880350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 101 - 345
Target Start/End: Original strand, 30235745 - 30236004
Alignment:
Q  101 cagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaataccc 200  Q
    ||||||| |||||||||||| || |||||||| |||||| |||||||||| ||||||||||| |||||||||||||||  |||||| | |||||| | ||    
T  30235745 cagcaaagttttattaaaaaccaagtctctgcgcaagacaaacaaagaccggtgttacagaaggtacaaactaaaggctccgtatataggcggaacatcc 30235844  T
Q  201 aaaaacaaaccccaacaaatacattcatgcgat---------------caacacccatcaaaataaacatcacctcctaaaactgattcctaaacttacc 285  Q
     ||||||||| |||||||| |||  | ||||||               ||||||||| |||||||||||||||| ||||||||||| ||||| | | |||    
T  30235845 gaaaacaaacaccaacaaagacacccttgcgatcaacacccaaaaggacaacacccaccaaaataaacatcaccccctaaaactgactcctatattaacc 30235944  T
Q  286 aaccactgaaaatacgacttccataacactcttcgccactactcaccccaaaagaacacc 345  Q
     |||| | || | ||||| |||||||||||| ||||||||||||||| |||| |||||||    
T  30235945 gaccattaaataaacgacatccataacactcatcgccactactcaccacaaacgaacacc 30236004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 159 - 403
Target Start/End: Original strand, 41790955 - 41791200
Alignment:
Q  159 agaaagtacaaactaaaggcgtcgtataaaagcggaatacccaaaaacaaaccccaacaaatacattcatgcgatcaacacccatcaaaataaacatcac 258  Q
    |||| |||||||||||||  |||||||| | |||||| ||||||||| ||| ||||| ||| ||| ||||  |  |||| |||| |||||||||||||||    
T  41790955 agaaggtacaaactaaagatgtcgtatataggcggaacacccaaaaataaaacccaataaagacactcataaggacaacccccaccaaaataaacatcac 41791054  T
Q  259 ctcctaaaactgattcctaaacttaccaaccactgaaaatacgacttccataacactcttcgccactactcaccccaaaagaaca-ccttgtaaaaaaga 357  Q
    | ||||||||||| || || ||||||  ||||||||||| ||||| | |||||| ||| || |||||||||||| |||||||||| |||||||||| ||     
T  41791055 cccctaaaactgactcatatacttactgaccactgaaaaaacgacattcataaccctcatcaccactactcacctcaaaagaacacccttgtaaaagagg 41791154  T
Q  358 actcaatcctcatccccaacaccgagccacatccgaagaactcctt 403  Q
    |  || |||||||| |||| |  ||| |||||| ||||||||||||    
T  41791155 aaccagtcctcatcaccaaaagtgagtcacatctgaagaactcctt 41791200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 231 - 399
Target Start/End: Original strand, 32945468 - 32945636
Alignment:
Q  231 gatcaacacccatcaaaataaacatcacctcctaaaactgattcctaaacttaccaaccactgaaaatacgacttccataacactcttcgccactactca 330  Q
    |||||||| ||| |||||||||||||| | | ||||||||| ||||| || |||| ||  ||||||  ||||| |||||||||||| |||||||||||||    
T  32945468 gatcaacatccaccaaaataaacatcagcccttaaaactgactcctatacctaccgacg-ctgaaagaacgacatccataacactcatcgccactactca 32945566  T
Q  331 ccccaaaagaacac-cttgtaaaaaagaactcaatcctcatccccaacaccgagccacatccgaagaact 399  Q
    || |||||||||||  |||||||||||||  || || ||||| ||||||||||| |||||| ||||||||    
T  32945567 cctcaaaagaacacttttgtaaaaaagaaaccagtcatcatcaccaacaccgagtcacatctgaagaact 32945636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 5214933 - 5215053
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaata 197  Q
    ||||||||||||||||||||||||||| || ||||| |||||||||| |||||  |||||||||||||||||||| |||||| |||||| | ||| || |    
T  5214933 aatcagcaaaattttattaaaaatcagatccctgcataagacgaacagagaccgatgttacagaaagtacaaact-aaggcgccgtatataggcgaaaca 5215031  T
Q  198 cccaaaaacaaaccccaacaaa 219  Q
    ||| ||||||||| | ||||||    
T  5215032 cccgaaaacaaactctaacaaa 5215053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 234 - 399
Target Start/End: Complemental strand, 10552578 - 10552416
Alignment:
Q  234 caacacccatcaaaataaacatcacctcctaaaactgattcctaaacttaccaaccactgaaaatacgacttccataacactcttcgccactactcaccc 333  Q
    ||||||| | ||||||||||||| |||   |||||||| || || ||| | |||||||| |||| ||||| ||||||| |||| |||||||||||||||     
T  10552578 caacaccaaccaaaataaacatcccct---aaaactgactcatatactaagcaaccactaaaaa-acgacatccataaaactcgtcgccactactcacct 10552483  T
Q  334 caaaagaaca-ccttgtaaaaaagaactcaatcctcatccccaacaccgagccacatccgaagaact 399  Q
    |||||||||| |||||||||| ||||| || |||||||| ||||||| | ||||| |||||||||||    
T  10552482 caaaagaacacccttgtaaaagagaacccagtcctcatctccaacactgtgccacctccgaagaact 10552416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 35062914 - 35062842
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaa 170  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||||    
T  35062914 aatcagcaaaattttattaaaaatcaggtctctgcacaagacaaacagagaacagtgttacagaaaatacaaa 35062842  T

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Target: chr8; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 261 - 403
Target Start/End: Complemental strand, 35062744 - 35062602
Alignment:
Q  261 cctaaaactgattcctaaacttaccaaccactgaaaatacgacttccataacactcttcgccactactcaccccaaaagaaca-ccttgtaaaaaagaac 359  Q
    ||||||||||| || || ||| |||||||||| |||| || || |||||||||||| ||||||||||||||| ||| |||||| |||||||||| |||||    
T  35062744 cctaaaactgactcatatactaaccaaccactaaaaa-acaacatccataacactcgtcgccactactcacctcaagagaacacccttgtaaaagagaac 35062646  T
Q  360 tcaatcctcatccccaacaccgagccacatccgaagaactcctt 403  Q
     || |||||||| ||||||  | ||||| |||||||||||||||    
T  35062645 ccagtcctcatcaccaacattgtgccacctccgaagaactcctt 35062602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 218
Target Start/End: Complemental strand, 10552722 - 10552604
Alignment:
Q  99 atcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaatac 198  Q
    |||| ||||||||||||||||| || |||||||||||||||||||| |||   || ||| | | ||||| ||||||| ||| |||||| | |||||| |     
T  10552722 atcatcaaaattttattaaaaaccatgtctctgcacaagacgaacagagaatggtattagaaagagtaccaactaaa-gcgccgtatataggcggaacat 10552624  T
Q  199 ccaaaaacaaaccccaacaa 218  Q
    || ||||||||| |||||||    
T  10552623 ccgaaaacaaacaccaacaa 10552604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 41790570 - 41790623
Alignment:
Q  109 ttttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaa 162  Q
    |||||||||||||||||| | ||||||||||||||| |||||  ||||||||||    
T  41790570 ttttattaaaaatcaggtttttgcacaagacgaacatagaccgatgttacagaa 41790623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 209
Target Start/End: Original strand, 32945324 - 32945434
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaata 197  Q
    |||||| ||||||||||||||| | |||| ||||||||||||| ||| |||    ||||||| || |||||||||||||  || ||||| | |||||| |    
T  32945324 aatcagtaaaattttattaaaact-aggtttctgcacaagacggacagagattgatgttacataaggtacaaactaaagatgttgtatataggcggaaca 32945422  T
Q  198 cccaaaaacaaa 209  Q
    ||| ||||||||    
T  32945423 cccgaaaacaaa 32945434  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 19432493 - 19432372
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaata 197  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| ||| | ||||||||||||||| |||||||| ||||||| |||||| |  ||||| |    
T  19432493 aatcagcaaaattttattaaaaaacaggtctttgcacaagacggacagataccagtgttacagaaggtacaaacaaaaggcgccgtatatagacggaaca 19432394  T
Q  198 cccaaaaacaaaccccaacaaa 219  Q
     || |||||||| |||||||||    
T  19432393 tccgaaaacaaaacccaacaaa 19432372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 98 - 243
Target Start/End: Complemental strand, 35800898 - 35800752
Alignment:
Q  98 aatcagcaaaattttattaaaaa-tcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaat 196  Q
    ||||||||||||||||||||||| | ||||||||| |||||||||||| ||||   ||||| |||||||||||| ||| ||||  ||||| |  |||||     
T  35800898 aatcagcaaaattttattaaaaaataaggtctctgtacaagacgaacagagactgatgttaaagaaagtacaaaataacggcgctgtatatagacggaac 35800799  T
Q  197 acccaaaaacaaaccccaacaaatacattcatgcgatcaacacccat 243  Q
    ||| |||||||||| ||||| || | |  ||||||||||||||||||    
T  35800798 accgaaaaacaaacaccaacgaaaatacccatgcgatcaacacccat 35800752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 239
Target Start/End: Original strand, 43373724 - 43373858
Alignment:
Q  102 agcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagaccagtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaataccca 201  Q
    ||||||||||||| ||||||||| |||||||||    || ||  ||||| ||| || | || ||||||||||||||||| ||||| | ||| || ||||     
T  43373724 agcaaaattttatcaaaaatcagatctctgcacg---cggacggagaccggtgatataaaatgtacaaactaaaggcgttgtatataggcgaaacacccg 43373820  T
Q  202 aaaacaaaccccaacaaatacattcatgcgatcaacac 239  Q
    |||||||| ||||||||| |||  |||| |||||||||    
T  43373821 aaaacaaaacccaacaaagacacccatgtgatcaacac 43373858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 47105164 - 47105216
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagacc 150  Q
    ||||||||||| ||||||||||||| | || |||||||||||||||| |||||    
T  47105164 aatcagcaaaaatttattaaaaatctgatccctgcacaagacgaacagagacc 47105216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 43373868 - 43373910
Alignment:
Q  234 caacacccatcaaaataaacatcacctcctaaaactgattcct 276  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||    
T  43373868 caacacccaccaaaataaacatcaccccctaaaactgactcct 43373910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 16502151 - 16502099
Alignment:
Q  98 aatcagcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagacc 150  Q
    |||| |||||| ||||||||| ||| |||| |||||||||||||||| |||||    
T  16502151 aatcggcaaaaatttattaaacatccggtccctgcacaagacgaacagagacc 16502099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 21983508 - 21983552
Alignment:
Q  106 aaattttattaaaaatcaggtctctgcacaagacgaacaaagacc 150  Q
    ||||||||||||||||||| || |||| ||||||||||| |||||    
T  21983508 aaattttattaaaaatcagatccctgctcaagacgaacagagacc 21983552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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