View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5974-Insertion-5 (Length: 464)
Name: NF5974-Insertion-5
Description: NF5974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5974-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 8 - 464
Target Start/End: Original strand, 7831773 - 7832229
Alignment:
| Q |
8 |
atgaacatcttttctctcatgttaaaatggtccgcaattatgtaaagagaaaattggggcactttctcgttaacgggagccctaacattattagtagcaa |
107 |
Q |
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| T |
7831773 |
atgaacatcttttctcttatgttaaaatggtcctcaattatgtaaagaggaaatttgggcactttctcgttaacaggagccctaacattattagtagtaa |
7831872 |
T |
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| Q |
108 |
caacacctacttggtcctaaatggccctcgtctccata----aaaaatgaattctttgtggccatcttaagaagaattaaatagtatttattctttaaac |
203 |
Q |
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| T |
7831873 |
caacacctacttggtcctaaatggccctcgtctctatataaaaaaaatgaattctttgtggccatcttaagaagaattaaatagtatttattctttaaac |
7831972 |
T |
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| Q |
204 |
cacaaacaaaattcacaaacatcgattgggatcaatcactgatgaaggcaaaccaattcgaagacttacacagacaccatagaatttaggtgtaattgag |
303 |
Q |
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| T |
7831973 |
cacaaacaaaattcacaaacatcg----ggatcaatcactgatgaaggcaaaccaatttgaagacttacacaaacaccatagaatttaggtgtaattgag |
7832068 |
T |
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| Q |
304 |
aaggtgcaatgttcaaccatccaaagacgcgattttaaaaaaggagagaaatatggcatcagagaccaatctttttgaaactatttcaaacataggaacc |
403 |
Q |
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| T |
7832069 |
aaggtgcaatgctcaaccatccaaagacgcgattttaaaaaaggagagaaatatggcatcagagaccaatctttttgaaactatttcaaacataggaacc |
7832168 |
T |
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| Q |
404 |
ttttattccttcaaaagtaatacaaatcccttactctgaaaagggaacccaaacttcacac |
464 |
Q |
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| T |
7832169 |
ttttattccttcaaaagtaatacaaatcccttagtctgaaaagggaacccaaacttcacac |
7832229 |
T |
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